Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05394 and MPMX19_05395 are separated by 186 nucleotides MPMX19_05395 and MPMX19_05396 overlap by 8 nucleotides MPMX19_05396 and MPMX19_05397 overlap by 14 nucleotides MPMX19_05397 and MPMX19_05398 are separated by 49 nucleotides
MPMX19_05394: MPMX19_05394 - L-cystine-binding protein FliY, at 73,335 to 74,138
_05394
MPMX19_05395: MPMX19_05395 - L-cystine transport system permease protein TcyB, at 74,325 to 74,999
_05395
MPMX19_05396: MPMX19_05396 - L-cystine transport system permease protein YecS, at 74,992 to 75,642
_05396
MPMX19_05397: MPMX19_05397 - Glutamine transport ATP-binding protein GlnQ, at 75,629 to 76,408
_05397
MPMX19_05398: MPMX19_05398 - HTH-type transcriptional regulatory protein GabR, at 76,458 to 77,972
_05398
Position (kb) 74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.634 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395 at 75.289 kb on + strand, within MPMX19_05396 at 75.289 kb on + strand, within MPMX19_05396 at 75.289 kb on + strand, within MPMX19_05396 at 75.289 kb on + strand, within MPMX19_05396 at 75.290 kb on - strand, within MPMX19_05396 at 75.290 kb on - strand, within MPMX19_05396 at 75.290 kb on - strand, within MPMX19_05396 at 75.290 kb on - strand, within MPMX19_05396 at 75.290 kb on - strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.586 kb on + strand at 75.587 kb on - strand at 75.587 kb on - strand at 75.641 kb on - strand at 76.076 kb on + strand, within MPMX19_05397 at 76.077 kb on - strand, within MPMX19_05397 at 76.531 kb on + strand at 76.531 kb on + strand at 76.532 kb on - strand at 76.600 kb on + strand at 76.600 kb on + strand at 76.600 kb on + strand at 76.600 kb on + strand at 76.600 kb on + strand at 76.600 kb on + strand at 76.601 kb on - strand at 76.601 kb on - strand at 76.601 kb on - strand at 76.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 74,141 + -0.5 74,141 + -1.4 74,141 + -1.2 74,141 + +0.1 74,141 + -1.3 74,141 + +0.1 74,141 + +0.5 74,141 + -0.6 74,141 + -0.2 74,141 + -2.0 74,141 + -3.0 74,141 + -0.7 74,141 + +0.1 74,141 + -0.0 74,141 + -1.7 74,141 + -0.2 74,141 + -0.7 74,141 + -2.1 74,141 + +0.1 74,142 - -0.9 74,142 - -1.2 74,142 - -0.9 74,142 - +0.3 74,142 - -1.2 74,142 - -0.2 74,142 - -0.0 74,142 - -1.0 74,142 - -1.6 74,142 - -0.2 74,142 - -0.5 74,142 - -0.2 74,142 - -0.4 74,142 - +0.7 74,142 - +0.3 74,142 - -1.2 74,142 - +0.3 74,142 - +0.1 74,142 - -1.1 74,142 - +0.5 74,331 + -1.2 74,331 + -1.7 74,331 + +0.6 74,331 + +0.2 74,331 + -0.9 74,331 + -1.0 74,332 - +0.6 74,332 - +0.5 74,332 - -0.7 74,332 - +1.3 74,361 + +0.8 74,361 + +0.8 74,361 + -1.9 74,361 + +1.4 74,361 + +1.4 74,362 - +0.5 74,362 - -0.9 74,362 - +0.1 74,362 - -0.6 74,362 - -1.2 74,363 + -1.7 74,363 + +0.7 74,363 + -0.2 74,363 + -0.2 74,363 + -1.0 74,363 + +0.2 74,363 + -0.6 74,363 + -0.5 74,363 + -0.4 74,363 + -0.6 74,364 - -0.6 74,364 - -0.2 74,364 - -0.7 74,364 - -0.3 74,364 - -1.2 74,364 - -1.9 74,364 - -1.4 74,364 - -0.0 74,364 - +0.5 74,364 - -0.7 74,364 - -2.4 74,364 - -0.5 74,364 - -0.0 74,364 - +0.4 74,364 - -1.6 74,364 - -0.5 74,364 - -0.0 74,364 - -1.7 74,502 + MPMX19_05395 0.26 +1.0 74,502 + MPMX19_05395 0.26 +1.9 74,502 + MPMX19_05395 0.26 -0.7 74,502 + MPMX19_05395 0.26 +0.3 74,502 + MPMX19_05395 0.26 -1.1 74,502 + MPMX19_05395 0.26 -0.7 74,502 + MPMX19_05395 0.26 -0.6 74,502 + MPMX19_05395 0.26 +1.8 74,502 + MPMX19_05395 0.26 +0.2 74,502 + MPMX19_05395 0.26 -0.6 74,502 + MPMX19_05395 0.26 -1.5 74,502 + MPMX19_05395 0.26 -0.2 74,503 - MPMX19_05395 0.26 -1.2 74,503 - MPMX19_05395 0.26 -0.6 74,503 - MPMX19_05395 0.26 -0.9 74,503 - MPMX19_05395 0.26 -0.2 74,503 - MPMX19_05395 0.26 +0.1 74,503 - MPMX19_05395 0.26 -1.2 74,503 - MPMX19_05395 0.26 -0.3 74,503 - MPMX19_05395 0.26 -0.6 74,503 - MPMX19_05395 0.26 +0.4 74,503 - MPMX19_05395 0.26 +0.0 74,503 - MPMX19_05395 0.26 +1.7 74,578 + MPMX19_05395 0.37 +0.2 74,578 + MPMX19_05395 0.37 +0.2 74,578 + MPMX19_05395 0.37 +0.0 74,578 + MPMX19_05395 0.37 -1.9 74,578 + MPMX19_05395 0.37 -0.3 74,578 + MPMX19_05395 0.37 -0.1 74,578 + MPMX19_05395 0.37 +0.3 74,579 - MPMX19_05395 0.38 +1.4 74,579 - MPMX19_05395 0.38 +0.1 74,579 - MPMX19_05395 0.38 +2.6 74,579 - MPMX19_05395 0.38 -1.2 74,579 - MPMX19_05395 0.38 +0.1 74,634 + MPMX19_05395 0.46 -1.0 74,733 + MPMX19_05395 0.60 -0.4 74,733 + MPMX19_05395 0.60 -1.0 74,733 + MPMX19_05395 0.60 -0.7 74,733 + MPMX19_05395 0.60 +1.4 74,733 + MPMX19_05395 0.60 -0.6 74,733 + MPMX19_05395 0.60 +0.3 74,734 - MPMX19_05395 0.61 -1.0 74,734 - MPMX19_05395 0.61 +0.5 74,734 - MPMX19_05395 0.61 -1.0 74,734 - MPMX19_05395 0.61 +0.1 74,734 - MPMX19_05395 0.61 -1.3 74,734 - MPMX19_05395 0.61 -0.5 74,734 - MPMX19_05395 0.61 -3.0 74,895 + MPMX19_05395 0.84 -0.4 74,895 + MPMX19_05395 0.84 -1.5 74,895 + MPMX19_05395 0.84 -0.2 74,895 + MPMX19_05395 0.84 -0.2 74,896 - MPMX19_05395 0.85 -0.4 74,896 - MPMX19_05395 0.85 -0.6 74,896 - MPMX19_05395 0.85 -0.2 74,896 - MPMX19_05395 0.85 +1.8 74,896 - MPMX19_05395 0.85 +1.0 74,896 - MPMX19_05395 0.85 +0.2 74,896 - MPMX19_05395 0.85 -0.7 74,916 + MPMX19_05395 0.88 +0.5 74,916 + MPMX19_05395 0.88 +0.5 74,916 + MPMX19_05395 0.88 +0.5 74,916 + MPMX19_05395 0.88 +0.4 74,916 + MPMX19_05395 0.88 +0.3 74,917 - MPMX19_05395 0.88 -0.4 74,917 - MPMX19_05395 0.88 -0.6 74,917 - MPMX19_05395 0.88 -0.9 75,289 + MPMX19_05396 0.46 +1.5 75,289 + MPMX19_05396 0.46 -1.0 75,289 + MPMX19_05396 0.46 -2.6 75,289 + MPMX19_05396 0.46 -0.5 75,290 - MPMX19_05396 0.46 -3.7 75,290 - MPMX19_05396 0.46 -1.4 75,290 - MPMX19_05396 0.46 -0.3 75,290 - MPMX19_05396 0.46 -1.2 75,290 - MPMX19_05396 0.46 -0.2 75,550 + MPMX19_05396 0.86 -1.2 75,550 + MPMX19_05396 0.86 -0.2 75,550 + MPMX19_05396 0.86 +1.8 75,550 + MPMX19_05396 0.86 -2.1 75,550 + MPMX19_05396 0.86 -0.6 75,550 + MPMX19_05396 0.86 -0.6 75,551 - MPMX19_05396 0.86 +0.3 75,551 - MPMX19_05396 0.86 -0.2 75,551 - MPMX19_05396 0.86 +1.8 75,551 - MPMX19_05396 0.86 -3.0 75,551 - MPMX19_05396 0.86 -0.1 75,551 - MPMX19_05396 0.86 -1.2 75,571 + MPMX19_05396 0.89 -0.9 75,571 + MPMX19_05396 0.89 -0.4 75,571 + MPMX19_05396 0.89 -0.1 75,571 + MPMX19_05396 0.89 -0.2 75,571 + MPMX19_05396 0.89 -0.2 75,571 + MPMX19_05396 0.89 +2.4 75,571 + MPMX19_05396 0.89 -0.2 75,571 + MPMX19_05396 0.89 -0.0 75,572 - MPMX19_05396 0.89 +3.4 75,572 - MPMX19_05396 0.89 +0.0 75,572 - MPMX19_05396 0.89 +0.7 75,572 - MPMX19_05396 0.89 -0.2 75,572 - MPMX19_05396 0.89 -0.7 75,572 - MPMX19_05396 0.89 -0.0 75,586 + +0.2 75,587 - +0.1 75,587 - +0.3 75,641 - +0.6 76,076 + MPMX19_05397 0.57 +0.1 76,077 - MPMX19_05397 0.57 +0.4 76,531 + -1.6 76,531 + -0.9 76,532 - -0.2 76,600 + -0.6 76,600 + +0.3 76,600 + -0.2 76,600 + -1.2 76,600 + -1.6 76,600 + +0.2 76,601 - -1.3 76,601 - +1.3 76,601 - -1.8 76,601 - -0.7
Or see this region's nucleotide sequence