Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05360 and MPMX19_05361 are separated by 77 nucleotides MPMX19_05361 and MPMX19_05362 are separated by 107 nucleotides MPMX19_05362 and MPMX19_05363 are separated by 209 nucleotides
MPMX19_05360: MPMX19_05360 - hypothetical protein, at 36,132 to 36,884
_05360
MPMX19_05361: MPMX19_05361 - CRP-like cAMP-activated global transcriptional regulator, at 36,962 to 37,672
_05361
MPMX19_05362: MPMX19_05362 - hypothetical protein, at 37,780 to 38,160
_05362
MPMX19_05363: MPMX19_05363 - D-beta-hydroxybutyrate dehydrogenase, at 38,370 to 39,158
_05363
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.898 kb on - strand at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.609 kb on + strand at 37.609 kb on + strand at 37.610 kb on - strand at 37.610 kb on - strand at 37.670 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.691 kb on + strand at 37.691 kb on + strand at 37.691 kb on + strand at 37.692 kb on - strand at 37.692 kb on - strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.821 kb on + strand, within MPMX19_05362 at 37.822 kb on - strand, within MPMX19_05362 at 37.897 kb on + strand, within MPMX19_05362 at 37.897 kb on + strand, within MPMX19_05362 at 37.935 kb on + strand, within MPMX19_05362 at 37.935 kb on + strand, within MPMX19_05362 at 37.935 kb on + strand, within MPMX19_05362 at 37.936 kb on - strand, within MPMX19_05362 at 38.243 kb on - strand at 38.304 kb on + strand at 38.304 kb on + strand at 38.344 kb on + strand at 38.344 kb on + strand at 38.344 kb on + strand at 38.345 kb on - strand at 38.345 kb on - strand at 38.345 kb on - strand at 38.345 kb on - strand at 38.372 kb on - strand at 38.372 kb on - strand at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.689 kb on + strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.690 kb on - strand, within MPMX19_05363 at 38.789 kb on + strand, within MPMX19_05363 at 38.789 kb on + strand, within MPMX19_05363 at 38.911 kb on + strand, within MPMX19_05363 at 38.911 kb on + strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 38.912 kb on - strand, within MPMX19_05363 at 39.031 kb on + strand, within MPMX19_05363 at 39.031 kb on + strand, within MPMX19_05363 at 39.031 kb on + strand, within MPMX19_05363 at 39.031 kb on + strand, within MPMX19_05363 at 39.032 kb on - strand, within MPMX19_05363 at 39.032 kb on - strand, within MPMX19_05363
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 36,883 - -1.4 36,883 - +0.5 36,883 - -1.4 36,883 - -2.0 36,883 - +0.4 36,898 - -0.8 37,460 + MPMX19_05361 0.70 +0.4 37,460 + MPMX19_05361 0.70 +0.6 37,460 + MPMX19_05361 0.70 -0.2 37,460 + MPMX19_05361 0.70 +0.2 37,460 + MPMX19_05361 0.70 -0.4 37,460 + MPMX19_05361 0.70 -0.3 37,461 - MPMX19_05361 0.70 +0.3 37,461 - MPMX19_05361 0.70 +0.1 37,461 - MPMX19_05361 0.70 +0.2 37,461 - MPMX19_05361 0.70 +0.5 37,471 + MPMX19_05361 0.72 +0.0 37,471 + MPMX19_05361 0.72 -0.3 37,471 + MPMX19_05361 0.72 -1.2 37,471 + MPMX19_05361 0.72 -2.0 37,472 - MPMX19_05361 0.72 +0.2 37,472 - MPMX19_05361 0.72 -1.7 37,472 - MPMX19_05361 0.72 +0.1 37,472 - MPMX19_05361 0.72 -0.5 37,472 - MPMX19_05361 0.72 -1.1 37,595 + MPMX19_05361 0.89 -0.1 37,595 + MPMX19_05361 0.89 -1.3 37,595 + MPMX19_05361 0.89 -0.6 37,595 + MPMX19_05361 0.89 +0.1 37,595 + MPMX19_05361 0.89 +0.8 37,595 + MPMX19_05361 0.89 -0.3 37,595 + MPMX19_05361 0.89 +0.5 37,595 + MPMX19_05361 0.89 -0.9 37,596 - MPMX19_05361 0.89 +0.4 37,596 - MPMX19_05361 0.89 +0.2 37,596 - MPMX19_05361 0.89 -1.0 37,596 - MPMX19_05361 0.89 +0.7 37,596 - MPMX19_05361 0.89 +0.3 37,609 + +0.3 37,609 + +0.5 37,610 - -0.0 37,610 - -0.3 37,670 + -0.9 37,683 + -0.7 37,683 + -0.6 37,683 + +0.3 37,683 + +0.0 37,683 + -0.9 37,683 + -0.6 37,683 + -1.0 37,683 + -0.6 37,683 + -0.2 37,684 - -1.0 37,684 - +0.3 37,684 - -0.6 37,684 - +1.4 37,691 + -0.7 37,691 + -1.2 37,691 + -0.3 37,692 - +1.8 37,692 - -0.2 37,728 + -1.9 37,728 + +0.3 37,728 + -0.3 37,728 + +0.3 37,728 + -1.2 37,728 + -1.3 37,728 + +0.0 37,728 + +1.2 37,729 - -0.9 37,729 - -1.3 37,729 - +0.4 37,729 - +0.2 37,821 + MPMX19_05362 0.11 +0.6 37,822 - MPMX19_05362 0.11 -2.0 37,897 + MPMX19_05362 0.31 -0.9 37,897 + MPMX19_05362 0.31 -1.2 37,935 + MPMX19_05362 0.41 +0.6 37,935 + MPMX19_05362 0.41 -0.7 37,935 + MPMX19_05362 0.41 -1.6 37,936 - MPMX19_05362 0.41 -0.0 38,243 - -1.8 38,304 + -0.5 38,304 + -0.4 38,344 + -1.2 38,344 + +0.1 38,344 + +2.3 38,345 - -1.2 38,345 - -0.4 38,345 - -3.1 38,345 - -1.3 38,372 - -1.8 38,372 - -0.6 38,689 + MPMX19_05363 0.40 -1.2 38,689 + MPMX19_05363 0.40 +0.0 38,689 + MPMX19_05363 0.40 -1.6 38,689 + MPMX19_05363 0.40 +0.1 38,689 + MPMX19_05363 0.40 -0.6 38,689 + MPMX19_05363 0.40 +0.6 38,689 + MPMX19_05363 0.40 +1.0 38,689 + MPMX19_05363 0.40 -0.6 38,689 + MPMX19_05363 0.40 +0.4 38,689 + MPMX19_05363 0.40 -0.6 38,689 + MPMX19_05363 0.40 +0.5 38,689 + MPMX19_05363 0.40 +0.2 38,689 + MPMX19_05363 0.40 -0.5 38,690 - MPMX19_05363 0.41 +0.1 38,690 - MPMX19_05363 0.41 +0.5 38,690 - MPMX19_05363 0.41 -2.0 38,690 - MPMX19_05363 0.41 -2.4 38,690 - MPMX19_05363 0.41 -2.2 38,690 - MPMX19_05363 0.41 -0.3 38,690 - MPMX19_05363 0.41 -0.3 38,690 - MPMX19_05363 0.41 -0.5 38,690 - MPMX19_05363 0.41 -1.5 38,690 - MPMX19_05363 0.41 +0.7 38,690 - MPMX19_05363 0.41 +0.4 38,789 + MPMX19_05363 0.53 -0.2 38,789 + MPMX19_05363 0.53 -0.5 38,911 + MPMX19_05363 0.69 +0.8 38,911 + MPMX19_05363 0.69 -0.6 38,912 - MPMX19_05363 0.69 -0.7 38,912 - MPMX19_05363 0.69 -0.1 38,912 - MPMX19_05363 0.69 -1.2 38,912 - MPMX19_05363 0.69 -0.7 38,912 - MPMX19_05363 0.69 -0.1 38,912 - MPMX19_05363 0.69 -0.0 38,912 - MPMX19_05363 0.69 -0.3 38,912 - MPMX19_05363 0.69 -1.6 39,031 + MPMX19_05363 0.84 -0.5 39,031 + MPMX19_05363 0.84 -0.2 39,031 + MPMX19_05363 0.84 +1.1 39,031 + MPMX19_05363 0.84 +0.5 39,032 - MPMX19_05363 0.84 -0.2 39,032 - MPMX19_05363 0.84 -2.1
Or see this region's nucleotide sequence