Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05355

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05354 and MPMX19_05355 are separated by 33 nucleotidesMPMX19_05355 and MPMX19_05356 are separated by 224 nucleotides MPMX19_05354: MPMX19_05354 - putative multidrug resistance protein EmrK, at 27,030 to 28,154 _05354 MPMX19_05355: MPMX19_05355 - Transcriptional regulator SlyA, at 28,188 to 28,694 _05355 MPMX19_05356: MPMX19_05356 - Dihydroxy-acid dehydratase, at 28,919 to 30,784 _05356 Position (kb) 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 27.289 kb on + strand, within MPMX19_05354at 27.289 kb on + strand, within MPMX19_05354at 27.289 kb on + strand, within MPMX19_05354at 27.289 kb on + strand, within MPMX19_05354at 27.289 kb on + strand, within MPMX19_05354at 27.290 kb on - strand, within MPMX19_05354at 27.329 kb on + strand, within MPMX19_05354at 27.329 kb on + strand, within MPMX19_05354at 27.330 kb on - strand, within MPMX19_05354at 27.330 kb on - strand, within MPMX19_05354at 27.330 kb on - strand, within MPMX19_05354at 27.418 kb on + strand, within MPMX19_05354at 27.418 kb on + strand, within MPMX19_05354at 27.418 kb on + strand, within MPMX19_05354at 27.418 kb on + strand, within MPMX19_05354at 27.418 kb on + strand, within MPMX19_05354at 27.418 kb on + strand, within MPMX19_05354at 27.419 kb on - strand, within MPMX19_05354at 27.419 kb on - strand, within MPMX19_05354at 27.419 kb on - strand, within MPMX19_05354at 27.658 kb on + strand, within MPMX19_05354at 27.658 kb on + strand, within MPMX19_05354at 27.658 kb on + strand, within MPMX19_05354at 27.658 kb on + strand, within MPMX19_05354at 27.658 kb on + strand, within MPMX19_05354at 27.658 kb on + strand, within MPMX19_05354at 27.659 kb on - strand, within MPMX19_05354at 27.659 kb on - strand, within MPMX19_05354at 27.659 kb on - strand, within MPMX19_05354at 27.659 kb on - strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.970 kb on + strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.971 kb on - strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.991 kb on + strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 27.992 kb on - strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.009 kb on + strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.010 kb on - strand, within MPMX19_05354at 28.016 kb on - strand, within MPMX19_05354at 28.330 kb on + strand, within MPMX19_05355at 28.330 kb on + strand, within MPMX19_05355at 28.330 kb on + strand, within MPMX19_05355at 28.330 kb on + strand, within MPMX19_05355at 28.331 kb on - strand, within MPMX19_05355at 28.331 kb on - strand, within MPMX19_05355at 28.331 kb on - strand, within MPMX19_05355at 28.331 kb on - strand, within MPMX19_05355at 28.331 kb on - strand, within MPMX19_05355at 28.331 kb on - strand, within MPMX19_05355at 28.706 kb on - strandat 28.735 kb on + strandat 28.735 kb on + strandat 28.736 kb on - strandat 28.736 kb on - strandat 28.736 kb on - strandat 28.736 kb on - strandat 28.745 kb on + strandat 28.745 kb on + strandat 28.745 kb on + strandat 28.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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27,289 + MPMX19_05354 0.23 -1.2
27,289 + MPMX19_05354 0.23 +0.1
27,289 + MPMX19_05354 0.23 -1.0
27,289 + MPMX19_05354 0.23 -0.8
27,289 + MPMX19_05354 0.23 -0.3
27,290 - MPMX19_05354 0.23 +0.5
27,329 + MPMX19_05354 0.27 -1.0
27,329 + MPMX19_05354 0.27 -0.3
27,330 - MPMX19_05354 0.27 -0.2
27,330 - MPMX19_05354 0.27 -0.3
27,330 - MPMX19_05354 0.27 +0.1
27,418 + MPMX19_05354 0.34 -1.0
27,418 + MPMX19_05354 0.34 -0.3
27,418 + MPMX19_05354 0.34 -0.7
27,418 + MPMX19_05354 0.34 -1.0
27,418 + MPMX19_05354 0.34 +0.2
27,418 + MPMX19_05354 0.34 -0.2
27,419 - MPMX19_05354 0.35 +1.0
27,419 - MPMX19_05354 0.35 +0.9
27,419 - MPMX19_05354 0.35 +0.0
27,658 + MPMX19_05354 0.56 +0.6
27,658 + MPMX19_05354 0.56 +0.1
27,658 + MPMX19_05354 0.56 +0.5
27,658 + MPMX19_05354 0.56 -0.9
27,658 + MPMX19_05354 0.56 -0.6
27,658 + MPMX19_05354 0.56 -0.2
27,659 - MPMX19_05354 0.56 -0.6
27,659 - MPMX19_05354 0.56 +0.2
27,659 - MPMX19_05354 0.56 -1.1
27,659 - MPMX19_05354 0.56 -1.3
27,970 + MPMX19_05354 0.84 -0.0
27,970 + MPMX19_05354 0.84 +0.8
27,970 + MPMX19_05354 0.84 +0.6
27,970 + MPMX19_05354 0.84 +0.0
27,970 + MPMX19_05354 0.84 -0.5
27,970 + MPMX19_05354 0.84 -1.3
27,970 + MPMX19_05354 0.84 -1.0
27,970 + MPMX19_05354 0.84 +1.8
27,970 + MPMX19_05354 0.84 -1.9
27,970 + MPMX19_05354 0.84 -0.4
27,970 + MPMX19_05354 0.84 -1.3
27,970 + MPMX19_05354 0.84 -1.4
27,970 + MPMX19_05354 0.84 -0.2
27,970 + MPMX19_05354 0.84 +0.0
27,970 + MPMX19_05354 0.84 +0.6
27,970 + MPMX19_05354 0.84 -0.9
27,970 + MPMX19_05354 0.84 +0.1
27,970 + MPMX19_05354 0.84 +0.2
27,970 + MPMX19_05354 0.84 +0.3
27,970 + MPMX19_05354 0.84 -0.3
27,971 - MPMX19_05354 0.84 -0.1
27,971 - MPMX19_05354 0.84 +0.1
27,971 - MPMX19_05354 0.84 +0.3
27,971 - MPMX19_05354 0.84 +1.3
27,971 - MPMX19_05354 0.84 -0.9
27,971 - MPMX19_05354 0.84 +0.5
27,971 - MPMX19_05354 0.84 -1.2
27,971 - MPMX19_05354 0.84 -0.2
27,971 - MPMX19_05354 0.84 -0.7
27,971 - MPMX19_05354 0.84 +0.6
27,971 - MPMX19_05354 0.84 +0.7
27,971 - MPMX19_05354 0.84 -1.5
27,971 - MPMX19_05354 0.84 -1.2
27,991 + MPMX19_05354 0.85 +0.0
27,991 + MPMX19_05354 0.85 +1.4
27,991 + MPMX19_05354 0.85 +2.8
27,991 + MPMX19_05354 0.85 -2.4
27,991 + MPMX19_05354 0.85 -0.5
27,991 + MPMX19_05354 0.85 +0.6
27,991 + MPMX19_05354 0.85 +0.0
27,991 + MPMX19_05354 0.85 +0.6
27,991 + MPMX19_05354 0.85 -0.3
27,991 + MPMX19_05354 0.85 +0.2
27,991 + MPMX19_05354 0.85 +0.3
27,991 + MPMX19_05354 0.85 -1.2
27,991 + MPMX19_05354 0.85 -0.3
27,991 + MPMX19_05354 0.85 +0.7
27,991 + MPMX19_05354 0.85 +0.4
27,991 + MPMX19_05354 0.85 -1.7
27,991 + MPMX19_05354 0.85 -0.6
27,991 + MPMX19_05354 0.85 +0.4
27,991 + MPMX19_05354 0.85 -1.9
27,991 + MPMX19_05354 0.85 -0.7
27,991 + MPMX19_05354 0.85 +0.6
27,991 + MPMX19_05354 0.85 +0.3
27,991 + MPMX19_05354 0.85 -0.1
27,991 + MPMX19_05354 0.85 -2.6
27,992 - MPMX19_05354 0.86 -0.6
27,992 - MPMX19_05354 0.86 -1.3
27,992 - MPMX19_05354 0.86 -0.7
27,992 - MPMX19_05354 0.86 +0.3
27,992 - MPMX19_05354 0.86 -1.0
27,992 - MPMX19_05354 0.86 -2.4
27,992 - MPMX19_05354 0.86 +0.1
27,992 - MPMX19_05354 0.86 -0.2
27,992 - MPMX19_05354 0.86 -0.4
27,992 - MPMX19_05354 0.86 -0.9
27,992 - MPMX19_05354 0.86 +0.5
27,992 - MPMX19_05354 0.86 +0.3
27,992 - MPMX19_05354 0.86 +0.6
27,992 - MPMX19_05354 0.86 -2.9
27,992 - MPMX19_05354 0.86 +0.9
27,992 - MPMX19_05354 0.86 -1.2
27,992 - MPMX19_05354 0.86 -0.0
27,992 - MPMX19_05354 0.86 +1.3
27,992 - MPMX19_05354 0.86 -0.3
27,992 - MPMX19_05354 0.86 -1.5
28,009 + MPMX19_05354 0.87 -1.5
28,009 + MPMX19_05354 0.87 +1.6
28,009 + MPMX19_05354 0.87 +0.4
28,009 + MPMX19_05354 0.87 -0.8
28,009 + MPMX19_05354 0.87 -1.5
28,009 + MPMX19_05354 0.87 -1.6
28,009 + MPMX19_05354 0.87 -0.2
28,009 + MPMX19_05354 0.87 -0.0
28,009 + MPMX19_05354 0.87 -1.2
28,009 + MPMX19_05354 0.87 -0.2
28,009 + MPMX19_05354 0.87 -0.2
28,009 + MPMX19_05354 0.87 +0.2
28,009 + MPMX19_05354 0.87 +0.7
28,009 + MPMX19_05354 0.87 -1.1
28,009 + MPMX19_05354 0.87 -0.4
28,009 + MPMX19_05354 0.87 -1.2
28,009 + MPMX19_05354 0.87 +0.6
28,009 + MPMX19_05354 0.87 -1.2
28,009 + MPMX19_05354 0.87 -0.2
28,009 + MPMX19_05354 0.87 +1.0
28,009 + MPMX19_05354 0.87 -0.5
28,009 + MPMX19_05354 0.87 +0.4
28,009 + MPMX19_05354 0.87 -1.2
28,009 + MPMX19_05354 0.87 -2.4
28,009 + MPMX19_05354 0.87 -0.7
28,009 + MPMX19_05354 0.87 +0.3
28,009 + MPMX19_05354 0.87 -2.4
28,009 + MPMX19_05354 0.87 -0.2
28,009 + MPMX19_05354 0.87 +1.0
28,009 + MPMX19_05354 0.87 +0.3
28,009 + MPMX19_05354 0.87 -0.8
28,009 + MPMX19_05354 0.87 +0.8
28,009 + MPMX19_05354 0.87 -0.5
28,009 + MPMX19_05354 0.87 +0.8
28,009 + MPMX19_05354 0.87 -0.6
28,009 + MPMX19_05354 0.87 +0.8
28,009 + MPMX19_05354 0.87 -0.4
28,010 - MPMX19_05354 0.87 -0.4
28,010 - MPMX19_05354 0.87 -1.3
28,010 - MPMX19_05354 0.87 -0.2
28,010 - MPMX19_05354 0.87 -1.1
28,010 - MPMX19_05354 0.87 +0.6
28,010 - MPMX19_05354 0.87 -0.7
28,010 - MPMX19_05354 0.87 -0.4
28,010 - MPMX19_05354 0.87 -1.0
28,010 - MPMX19_05354 0.87 -0.2
28,010 - MPMX19_05354 0.87 -0.5
28,010 - MPMX19_05354 0.87 +0.0
28,010 - MPMX19_05354 0.87 -1.2
28,010 - MPMX19_05354 0.87 -0.2
28,010 - MPMX19_05354 0.87 -2.5
28,010 - MPMX19_05354 0.87 -0.4
28,010 - MPMX19_05354 0.87 -0.2
28,010 - MPMX19_05354 0.87 -0.0
28,010 - MPMX19_05354 0.87 +0.8
28,010 - MPMX19_05354 0.87 -0.5
28,016 - MPMX19_05354 0.88 -1.0
28,330 + MPMX19_05355 0.28 -1.2
28,330 + MPMX19_05355 0.28 -0.7
28,330 + MPMX19_05355 0.28 -1.9
28,330 + MPMX19_05355 0.28 -2.1
28,331 - MPMX19_05355 0.28 +0.1
28,331 - MPMX19_05355 0.28 -0.2
28,331 - MPMX19_05355 0.28 -1.0
28,331 - MPMX19_05355 0.28 -0.4
28,331 - MPMX19_05355 0.28 -0.7
28,331 - MPMX19_05355 0.28 +0.3
28,706 - -0.7
28,735 + -0.1
28,735 + -1.1
28,736 - -2.0
28,736 - -0.4
28,736 - -0.3
28,736 - -0.5
28,745 + -0.3
28,745 + -0.1
28,745 + -1.5
28,745 + -0.8

Or see this region's nucleotide sequence