Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05341 and MPMX19_05342 are separated by 79 nucleotides MPMX19_05342 and MPMX19_05343 are separated by 147 nucleotides MPMX19_05343 and MPMX19_05344 are separated by 23 nucleotides MPMX19_05344 and MPMX19_05345 are separated by 10 nucleotides
MPMX19_05341: MPMX19_05341 - hypothetical protein, at 13,975 to 14,751
_05341
MPMX19_05342: MPMX19_05342 - hypothetical protein, at 14,831 to 15,103
_05342
MPMX19_05343: MPMX19_05343 - hypothetical protein, at 15,251 to 16,255
_05343
MPMX19_05344: MPMX19_05344 - HTH-type transcriptional regulator YofA, at 16,279 to 17,199
_05344
MPMX19_05345: MPMX19_05345 - hypothetical protein, at 17,210 to 17,923
_05345
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 14.259 kb on + strand, within MPMX19_05341 at 14.259 kb on + strand, within MPMX19_05341 at 14.260 kb on - strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.671 kb on + strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.749 kb on + strand at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.910 kb on - strand, within MPMX19_05342 at 14.910 kb on - strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.180 kb on - strand at 15.362 kb on + strand, within MPMX19_05343 at 15.362 kb on + strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.213 kb on + strand at 16.213 kb on + strand at 16.214 kb on - strand at 16.223 kb on + strand at 16.223 kb on + strand at 16.223 kb on + strand at 16.223 kb on + strand at 16.224 kb on - strand at 16.224 kb on - strand at 16.224 kb on - strand at 16.224 kb on - strand at 16.224 kb on - strand at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.529 kb on - strand, within MPMX19_05344 at 16.529 kb on - strand, within MPMX19_05344 at 16.529 kb on - strand, within MPMX19_05344 at 16.529 kb on - strand, within MPMX19_05344 at 16.529 kb on - strand, within MPMX19_05344 at 16.744 kb on + strand, within MPMX19_05344 at 16.745 kb on - strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 17.102 kb on - strand, within MPMX19_05344 at 17.102 kb on - strand, within MPMX19_05344 at 17.102 kb on - strand, within MPMX19_05344
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 14,259 + MPMX19_05341 0.37 +2.8 14,259 + MPMX19_05341 0.37 -0.9 14,260 - MPMX19_05341 0.37 -0.3 14,320 + MPMX19_05341 0.44 -0.2 14,320 + MPMX19_05341 0.44 -0.3 14,320 + MPMX19_05341 0.44 -0.3 14,320 + MPMX19_05341 0.44 -1.1 14,320 + MPMX19_05341 0.44 +0.1 14,320 + MPMX19_05341 0.44 -1.7 14,320 + MPMX19_05341 0.44 +0.7 14,320 + MPMX19_05341 0.44 -0.4 14,320 + MPMX19_05341 0.44 -0.2 14,321 - MPMX19_05341 0.45 -1.4 14,321 - MPMX19_05341 0.45 +0.5 14,321 - MPMX19_05341 0.45 -1.9 14,321 - MPMX19_05341 0.45 +1.2 14,321 - MPMX19_05341 0.45 -0.3 14,321 - MPMX19_05341 0.45 +0.0 14,321 - MPMX19_05341 0.45 -1.1 14,321 - MPMX19_05341 0.45 -1.2 14,321 - MPMX19_05341 0.45 +0.2 14,321 - MPMX19_05341 0.45 -0.2 14,596 + MPMX19_05341 0.80 +1.0 14,596 + MPMX19_05341 0.80 -0.7 14,596 + MPMX19_05341 0.80 -2.1 14,596 + MPMX19_05341 0.80 -1.3 14,596 + MPMX19_05341 0.80 +0.3 14,597 - MPMX19_05341 0.80 -1.0 14,597 - MPMX19_05341 0.80 +0.5 14,597 - MPMX19_05341 0.80 -0.6 14,597 - MPMX19_05341 0.80 -0.7 14,597 - MPMX19_05341 0.80 -0.0 14,597 - MPMX19_05341 0.80 -1.7 14,671 + MPMX19_05341 0.90 +0.0 14,672 - MPMX19_05341 0.90 -0.0 14,672 - MPMX19_05341 0.90 -1.0 14,672 - MPMX19_05341 0.90 -0.0 14,709 + -0.6 14,709 + -0.3 14,709 + +0.0 14,709 + -0.6 14,709 + +1.0 14,709 + -1.0 14,709 + -0.2 14,709 + -0.2 14,709 + +1.1 14,709 + -1.0 14,709 + -0.5 14,710 - +0.4 14,710 - +0.8 14,710 - -1.9 14,710 - -0.2 14,710 - -0.7 14,710 - -0.5 14,710 - -2.2 14,710 - +0.7 14,710 - -1.4 14,710 - -0.3 14,749 + -2.0 14,909 + MPMX19_05342 0.29 +1.3 14,909 + MPMX19_05342 0.29 +1.8 14,909 + MPMX19_05342 0.29 -0.6 14,909 + MPMX19_05342 0.29 +1.5 14,910 - MPMX19_05342 0.29 +0.3 14,910 - MPMX19_05342 0.29 -0.1 14,942 + MPMX19_05342 0.41 +0.1 14,942 + MPMX19_05342 0.41 +0.3 14,942 + MPMX19_05342 0.41 -0.4 14,943 - MPMX19_05342 0.41 -1.6 14,943 - MPMX19_05342 0.41 -1.0 14,943 - MPMX19_05342 0.41 -0.6 15,053 + MPMX19_05342 0.81 -1.4 15,053 + MPMX19_05342 0.81 -0.9 15,053 + MPMX19_05342 0.81 +0.8 15,053 + MPMX19_05342 0.81 -0.9 15,053 + MPMX19_05342 0.81 +0.0 15,053 + MPMX19_05342 0.81 -1.6 15,053 + MPMX19_05342 0.81 -1.7 15,054 - MPMX19_05342 0.82 -0.7 15,054 - MPMX19_05342 0.82 +1.4 15,054 - MPMX19_05342 0.82 +0.7 15,180 - -2.0 15,362 + MPMX19_05343 0.11 +0.7 15,362 + MPMX19_05343 0.11 -2.5 15,363 - MPMX19_05343 0.11 +0.1 15,363 - MPMX19_05343 0.11 +2.0 15,363 - MPMX19_05343 0.11 +0.3 15,545 + MPMX19_05343 0.29 -0.4 15,545 + MPMX19_05343 0.29 -1.0 15,545 + MPMX19_05343 0.29 +0.2 15,546 - MPMX19_05343 0.29 +0.4 15,546 - MPMX19_05343 0.29 -0.2 15,546 - MPMX19_05343 0.29 +0.3 15,935 + MPMX19_05343 0.68 +0.5 15,935 + MPMX19_05343 0.68 +1.8 15,935 + MPMX19_05343 0.68 -0.2 15,935 + MPMX19_05343 0.68 +0.8 15,935 + MPMX19_05343 0.68 +0.4 15,936 - MPMX19_05343 0.68 +0.7 15,936 - MPMX19_05343 0.68 +0.4 15,936 - MPMX19_05343 0.68 +0.3 15,936 - MPMX19_05343 0.68 -0.3 16,106 + MPMX19_05343 0.85 -1.5 16,106 + MPMX19_05343 0.85 -1.3 16,106 + MPMX19_05343 0.85 +0.2 16,106 + MPMX19_05343 0.85 -0.3 16,106 + MPMX19_05343 0.85 -1.5 16,106 + MPMX19_05343 0.85 -1.1 16,106 + MPMX19_05343 0.85 +1.0 16,106 + MPMX19_05343 0.85 +1.8 16,106 + MPMX19_05343 0.85 +0.6 16,106 + MPMX19_05343 0.85 -0.6 16,106 + MPMX19_05343 0.85 -0.3 16,107 - MPMX19_05343 0.85 +0.5 16,107 - MPMX19_05343 0.85 +0.5 16,107 - MPMX19_05343 0.85 -0.5 16,107 - MPMX19_05343 0.85 +0.1 16,107 - MPMX19_05343 0.85 +0.7 16,107 - MPMX19_05343 0.85 -0.5 16,107 - MPMX19_05343 0.85 +1.5 16,107 - MPMX19_05343 0.85 -1.9 16,107 - MPMX19_05343 0.85 -1.0 16,107 - MPMX19_05343 0.85 +0.1 16,107 - MPMX19_05343 0.85 +0.8 16,107 - MPMX19_05343 0.85 -0.2 16,107 - MPMX19_05343 0.85 -1.7 16,107 - MPMX19_05343 0.85 -1.0 16,107 - MPMX19_05343 0.85 -1.0 16,107 - MPMX19_05343 0.85 -0.3 16,107 - MPMX19_05343 0.85 -2.0 16,107 - MPMX19_05343 0.85 -1.2 16,213 + -0.6 16,213 + +0.3 16,214 - -1.3 16,223 + +0.3 16,223 + -0.2 16,223 + +0.5 16,223 + +0.3 16,224 - +0.4 16,224 - -0.7 16,224 - -1.0 16,224 - -2.0 16,224 - -2.2 16,528 + MPMX19_05344 0.27 +0.7 16,528 + MPMX19_05344 0.27 -0.7 16,528 + MPMX19_05344 0.27 -0.0 16,528 + MPMX19_05344 0.27 +1.8 16,528 + MPMX19_05344 0.27 -0.7 16,528 + MPMX19_05344 0.27 +0.7 16,528 + MPMX19_05344 0.27 -2.0 16,529 - MPMX19_05344 0.27 +1.4 16,529 - MPMX19_05344 0.27 +0.5 16,529 - MPMX19_05344 0.27 -1.0 16,529 - MPMX19_05344 0.27 +0.0 16,529 - MPMX19_05344 0.27 +0.3 16,744 + MPMX19_05344 0.50 +0.3 16,745 - MPMX19_05344 0.51 +1.3 16,951 + MPMX19_05344 0.73 -0.4 16,951 + MPMX19_05344 0.73 -1.0 16,951 + MPMX19_05344 0.73 +0.1 16,951 + MPMX19_05344 0.73 +0.5 16,951 + MPMX19_05344 0.73 -0.5 16,951 + MPMX19_05344 0.73 -0.0 16,951 + MPMX19_05344 0.73 -1.5 16,951 + MPMX19_05344 0.73 -0.3 16,952 - MPMX19_05344 0.73 +0.3 16,952 - MPMX19_05344 0.73 +0.5 16,952 - MPMX19_05344 0.73 -0.3 16,952 - MPMX19_05344 0.73 -1.2 16,952 - MPMX19_05344 0.73 -1.0 16,952 - MPMX19_05344 0.73 +0.8 16,952 - MPMX19_05344 0.73 -2.6 16,952 - MPMX19_05344 0.73 -1.1 16,952 - MPMX19_05344 0.73 -3.1 16,952 - MPMX19_05344 0.73 +0.8 16,952 - MPMX19_05344 0.73 +0.8 16,952 - MPMX19_05344 0.73 +0.4 16,952 - MPMX19_05344 0.73 -0.8 16,952 - MPMX19_05344 0.73 +0.3 17,102 - MPMX19_05344 0.89 -0.5 17,102 - MPMX19_05344 0.89 +0.1 17,102 - MPMX19_05344 0.89 -1.2
Or see this region's nucleotide sequence