Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05329

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05327 and MPMX19_05328 are separated by 15 nucleotidesMPMX19_05328 and MPMX19_05329 are separated by 157 nucleotidesMPMX19_05329 and MPMX19_05330 are separated by 70 nucleotides MPMX19_05327: MPMX19_05327 - HTH-type transcriptional regulator PgrR, at 868,402 to 869,301 _05327 MPMX19_05328: MPMX19_05328 - hypothetical protein, at 869,317 to 869,634 _05328 MPMX19_05329: MPMX19_05329 - PTS system fructose-specific EIIB'BC component, at 869,792 to 871,564 _05329 MPMX19_05330: MPMX19_05330 - Tagatose-6-phosphate kinase, at 871,635 to 872,603 _05330 Position (kb) 869 870 871 872Strain fitness (log2 ratio) -2 -1 0 1 2at 868.829 kb on - strand, within MPMX19_05327at 868.924 kb on + strand, within MPMX19_05327at 868.924 kb on + strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.213 kb on - strandat 869.213 kb on - strandat 869.293 kb on + strandat 869.293 kb on + strandat 869.293 kb on + strandat 869.294 kb on - strandat 869.294 kb on - strandat 869.294 kb on - strandat 869.336 kb on + strandat 869.336 kb on + strandat 869.336 kb on + strandat 869.337 kb on - strandat 869.337 kb on - strandat 869.388 kb on + strand, within MPMX19_05328at 869.388 kb on + strand, within MPMX19_05328at 869.388 kb on + strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.389 kb on - strand, within MPMX19_05328at 869.710 kb on - strandat 869.710 kb on - strandat 869.710 kb on - strandat 869.710 kb on - strandat 869.713 kb on + strandat 869.713 kb on + strandat 869.713 kb on + strandat 869.713 kb on + strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.714 kb on - strandat 869.916 kb on + strandat 869.916 kb on + strandat 869.917 kb on - strandat 869.917 kb on - strandat 869.917 kb on - strandat 870.234 kb on + strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.235 kb on - strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.270 kb on + strand, within MPMX19_05329at 870.271 kb on - strand, within MPMX19_05329at 870.271 kb on - strand, within MPMX19_05329at 870.271 kb on - strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.417 kb on + strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.418 kb on - strand, within MPMX19_05329at 870.642 kb on + strand, within MPMX19_05329at 870.643 kb on - strand, within MPMX19_05329at 870.643 kb on - strand, within MPMX19_05329at 870.643 kb on - strand, within MPMX19_05329at 870.651 kb on + strand, within MPMX19_05329at 870.651 kb on + strand, within MPMX19_05329at 870.652 kb on - strand, within MPMX19_05329at 870.714 kb on + strand, within MPMX19_05329at 870.714 kb on + strand, within MPMX19_05329at 870.714 kb on + strand, within MPMX19_05329at 870.714 kb on + strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.745 kb on - strand, within MPMX19_05329at 870.745 kb on - strand, within MPMX19_05329at 870.745 kb on - strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.843 kb on + strand, within MPMX19_05329at 870.843 kb on + strand, within MPMX19_05329at 870.843 kb on + strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 871.525 kb on + strandat 871.525 kb on + strandat 871.525 kb on + strandat 871.526 kb on - strandat 871.695 kb on + strandat 872.134 kb on + strand, within MPMX19_05330

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
868,829 - MPMX19_05327 0.47 -0.3
868,924 + MPMX19_05327 0.58 -0.1
868,924 + MPMX19_05327 0.58 +0.3
868,925 - MPMX19_05327 0.58 -1.1
868,925 - MPMX19_05327 0.58 -0.9
868,925 - MPMX19_05327 0.58 +0.3
868,925 - MPMX19_05327 0.58 -1.6
869,125 + MPMX19_05327 0.80 -0.9
869,125 + MPMX19_05327 0.80 +0.1
869,125 + MPMX19_05327 0.80 -0.9
869,126 - MPMX19_05327 0.80 -1.8
869,126 - MPMX19_05327 0.80 -0.6
869,126 - MPMX19_05327 0.80 +0.2
869,126 - MPMX19_05327 0.80 +0.7
869,126 - MPMX19_05327 0.80 +1.4
869,126 - MPMX19_05327 0.80 -1.8
869,128 + MPMX19_05327 0.81 -0.1
869,128 + MPMX19_05327 0.81 +0.3
869,128 + MPMX19_05327 0.81 -0.3
869,128 + MPMX19_05327 0.81 -0.1
869,128 + MPMX19_05327 0.81 -0.3
869,128 + MPMX19_05327 0.81 -0.1
869,129 - MPMX19_05327 0.81 -0.2
869,129 - MPMX19_05327 0.81 +0.0
869,129 - MPMX19_05327 0.81 -1.7
869,129 - MPMX19_05327 0.81 +1.1
869,129 - MPMX19_05327 0.81 -0.8
869,129 - MPMX19_05327 0.81 -0.0
869,129 - MPMX19_05327 0.81 -0.5
869,213 - +1.2
869,213 - -0.7
869,293 + +0.2
869,293 + -0.3
869,293 + +1.0
869,294 - -0.2
869,294 - -0.7
869,294 - -0.3
869,336 + -0.2
869,336 + -0.3
869,336 + +1.7
869,337 - -0.7
869,337 - -1.9
869,388 + MPMX19_05328 0.22 -0.7
869,388 + MPMX19_05328 0.22 -0.3
869,388 + MPMX19_05328 0.22 +0.9
869,389 - MPMX19_05328 0.23 +0.1
869,389 - MPMX19_05328 0.23 +0.3
869,389 - MPMX19_05328 0.23 -0.1
869,389 - MPMX19_05328 0.23 -0.7
869,710 - -1.2
869,710 - +2.7
869,710 - +1.1
869,710 - +0.0
869,713 + -1.8
869,713 + -0.7
869,713 + -0.1
869,713 + -0.3
869,714 - +1.0
869,714 - -0.6
869,714 - +0.7
869,714 - +0.6
869,714 - +1.1
869,714 - +1.0
869,714 - -2.0
869,714 - -0.8
869,714 - -0.9
869,714 - -1.7
869,916 + -0.1
869,916 + +0.1
869,917 - -0.1
869,917 - -0.7
869,917 - +0.1
870,234 + MPMX19_05329 0.25 -2.0
870,235 - MPMX19_05329 0.25 -1.3
870,235 - MPMX19_05329 0.25 +0.5
870,235 - MPMX19_05329 0.25 +0.8
870,235 - MPMX19_05329 0.25 -1.7
870,235 - MPMX19_05329 0.25 -2.0
870,235 - MPMX19_05329 0.25 -0.9
870,235 - MPMX19_05329 0.25 +0.1
870,270 + MPMX19_05329 0.27 -1.0
870,270 + MPMX19_05329 0.27 -0.9
870,270 + MPMX19_05329 0.27 -1.1
870,270 + MPMX19_05329 0.27 -0.6
870,270 + MPMX19_05329 0.27 -0.4
870,271 - MPMX19_05329 0.27 -0.7
870,271 - MPMX19_05329 0.27 -0.5
870,271 - MPMX19_05329 0.27 -0.7
870,417 + MPMX19_05329 0.35 -1.8
870,417 + MPMX19_05329 0.35 -0.3
870,417 + MPMX19_05329 0.35 -1.5
870,417 + MPMX19_05329 0.35 -1.3
870,417 + MPMX19_05329 0.35 +0.2
870,417 + MPMX19_05329 0.35 -0.3
870,417 + MPMX19_05329 0.35 -0.1
870,417 + MPMX19_05329 0.35 -0.9
870,417 + MPMX19_05329 0.35 -0.3
870,417 + MPMX19_05329 0.35 -0.1
870,417 + MPMX19_05329 0.35 -0.2
870,417 + MPMX19_05329 0.35 -0.9
870,417 + MPMX19_05329 0.35 +0.3
870,417 + MPMX19_05329 0.35 -0.7
870,418 - MPMX19_05329 0.35 +0.4
870,418 - MPMX19_05329 0.35 -0.1
870,418 - MPMX19_05329 0.35 -0.1
870,418 - MPMX19_05329 0.35 -0.0
870,418 - MPMX19_05329 0.35 +0.1
870,418 - MPMX19_05329 0.35 -0.9
870,418 - MPMX19_05329 0.35 -0.5
870,418 - MPMX19_05329 0.35 -1.9
870,418 - MPMX19_05329 0.35 -1.2
870,418 - MPMX19_05329 0.35 +0.0
870,418 - MPMX19_05329 0.35 -1.1
870,418 - MPMX19_05329 0.35 -0.5
870,418 - MPMX19_05329 0.35 +0.7
870,418 - MPMX19_05329 0.35 -0.5
870,418 - MPMX19_05329 0.35 -0.8
870,418 - MPMX19_05329 0.35 -0.1
870,418 - MPMX19_05329 0.35 -0.5
870,418 - MPMX19_05329 0.35 -0.7
870,418 - MPMX19_05329 0.35 -0.7
870,642 + MPMX19_05329 0.48 -2.0
870,643 - MPMX19_05329 0.48 +0.3
870,643 - MPMX19_05329 0.48 -0.3
870,643 - MPMX19_05329 0.48 -0.7
870,651 + MPMX19_05329 0.48 -0.7
870,651 + MPMX19_05329 0.48 -0.9
870,652 - MPMX19_05329 0.49 -0.3
870,714 + MPMX19_05329 0.52 +0.7
870,714 + MPMX19_05329 0.52 -1.2
870,714 + MPMX19_05329 0.52 -0.3
870,714 + MPMX19_05329 0.52 -2.0
870,715 - MPMX19_05329 0.52 +0.3
870,715 - MPMX19_05329 0.52 +0.0
870,715 - MPMX19_05329 0.52 -1.1
870,715 - MPMX19_05329 0.52 -0.0
870,715 - MPMX19_05329 0.52 -0.1
870,715 - MPMX19_05329 0.52 +0.0
870,715 - MPMX19_05329 0.52 -1.7
870,745 - MPMX19_05329 0.54 +0.7
870,745 - MPMX19_05329 0.54 -0.3
870,745 - MPMX19_05329 0.54 -0.1
870,750 + MPMX19_05329 0.54 -0.1
870,750 + MPMX19_05329 0.54 -1.0
870,750 + MPMX19_05329 0.54 -1.4
870,750 + MPMX19_05329 0.54 +0.2
870,750 + MPMX19_05329 0.54 +0.3
870,750 + MPMX19_05329 0.54 -0.1
870,750 + MPMX19_05329 0.54 -1.7
870,750 + MPMX19_05329 0.54 +0.7
870,750 + MPMX19_05329 0.54 +0.1
870,750 + MPMX19_05329 0.54 -0.7
870,750 + MPMX19_05329 0.54 +0.7
870,750 + MPMX19_05329 0.54 -1.4
870,750 + MPMX19_05329 0.54 -2.7
870,750 + MPMX19_05329 0.54 -1.3
870,750 + MPMX19_05329 0.54 -1.2
870,751 - MPMX19_05329 0.54 +1.5
870,751 - MPMX19_05329 0.54 -0.7
870,751 - MPMX19_05329 0.54 -0.2
870,751 - MPMX19_05329 0.54 -1.3
870,751 - MPMX19_05329 0.54 +0.7
870,751 - MPMX19_05329 0.54 -1.7
870,751 - MPMX19_05329 0.54 +0.8
870,751 - MPMX19_05329 0.54 +0.1
870,751 - MPMX19_05329 0.54 +0.4
870,751 - MPMX19_05329 0.54 -0.8
870,751 - MPMX19_05329 0.54 -0.5
870,751 - MPMX19_05329 0.54 -0.6
870,751 - MPMX19_05329 0.54 -0.7
870,751 - MPMX19_05329 0.54 +0.4
870,751 - MPMX19_05329 0.54 -0.3
870,751 - MPMX19_05329 0.54 -2.6
870,751 - MPMX19_05329 0.54 -0.4
870,843 + MPMX19_05329 0.59 -0.1
870,843 + MPMX19_05329 0.59 -0.9
870,843 + MPMX19_05329 0.59 +0.1
870,844 - MPMX19_05329 0.59 -0.9
870,844 - MPMX19_05329 0.59 -0.3
870,844 - MPMX19_05329 0.59 -0.3
870,844 - MPMX19_05329 0.59 -0.7
870,844 - MPMX19_05329 0.59 -0.2
870,844 - MPMX19_05329 0.59 -0.7
871,525 + -0.8
871,525 + -1.2
871,525 + -1.1
871,526 - -0.7
871,695 + +0.1
872,134 + MPMX19_05330 0.51 -0.5

Or see this region's nucleotide sequence