Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05309

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05307 and MPMX19_05308 are separated by 105 nucleotidesMPMX19_05308 and MPMX19_05309 are separated by 55 nucleotidesMPMX19_05309 and MPMX19_05310 overlap by 4 nucleotidesMPMX19_05310 and MPMX19_05311 are separated by 17 nucleotides MPMX19_05307: MPMX19_05307 - hypothetical protein, at 843,079 to 844,722 _05307 MPMX19_05308: MPMX19_05308 - Nucleoside triphosphate pyrophosphohydrolase, at 844,828 to 845,637 _05308 MPMX19_05309: MPMX19_05309 - 4,4'-diaponeurosporenoate glycosyltransferase, at 845,693 to 846,844 _05309 MPMX19_05310: MPMX19_05310 - hypothetical protein, at 846,841 to 847,698 _05310 MPMX19_05311: MPMX19_05311 - 4,4'-diapolycopene oxygenase, at 847,716 to 849,269 _05311 Position (kb) 845 846 847Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 844.720 kb on + strandat 844.720 kb on + strandat 844.720 kb on + strandat 844.720 kb on + strandat 844.720 kb on + strandat 844.721 kb on - strandat 844.721 kb on - strandat 844.721 kb on - strandat 844.721 kb on - strandat 844.721 kb on - strandat 844.734 kb on + strandat 844.734 kb on + strandat 844.735 kb on - strandat 844.735 kb on - strandat 844.784 kb on - strandat 844.915 kb on + strand, within MPMX19_05308at 844.915 kb on + strand, within MPMX19_05308at 844.915 kb on + strand, within MPMX19_05308at 844.915 kb on + strand, within MPMX19_05308at 844.915 kb on + strand, within MPMX19_05308at 844.916 kb on - strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.951 kb on + strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 844.952 kb on - strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.032 kb on + strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.033 kb on - strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.035 kb on + strand, within MPMX19_05308at 845.036 kb on - strand, within MPMX19_05308at 845.036 kb on - strand, within MPMX19_05308at 845.036 kb on - strand, within MPMX19_05308at 845.646 kb on + strandat 845.725 kb on - strandat 846.075 kb on + strand, within MPMX19_05309at 846.075 kb on + strand, within MPMX19_05309at 846.075 kb on + strand, within MPMX19_05309at 846.075 kb on + strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.076 kb on - strand, within MPMX19_05309at 846.207 kb on + strand, within MPMX19_05309at 846.207 kb on + strand, within MPMX19_05309at 846.207 kb on + strand, within MPMX19_05309at 846.207 kb on + strand, within MPMX19_05309at 846.207 kb on + strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309at 846.208 kb on - strand, within MPMX19_05309at 846.989 kb on + strand, within MPMX19_05310at 846.989 kb on + strand, within MPMX19_05310at 846.989 kb on + strand, within MPMX19_05310at 846.989 kb on + strand, within MPMX19_05310at 846.989 kb on + strand, within MPMX19_05310at 846.989 kb on + strand, within MPMX19_05310at 846.989 kb on + strand, within MPMX19_05310at 846.989 kb on + strand, within MPMX19_05310at 846.989 kb on + strand, within MPMX19_05310at 846.990 kb on - strand, within MPMX19_05310at 846.990 kb on - strand, within MPMX19_05310at 846.990 kb on - strand, within MPMX19_05310at 846.990 kb on - strand, within MPMX19_05310at 846.990 kb on - strand, within MPMX19_05310at 846.990 kb on - strand, within MPMX19_05310at 846.990 kb on - strand, within MPMX19_05310at 846.990 kb on - strand, within MPMX19_05310at 846.990 kb on - strand, within MPMX19_05310at 847.205 kb on + strand, within MPMX19_05310at 847.206 kb on - strand, within MPMX19_05310at 847.353 kb on + strand, within MPMX19_05310at 847.353 kb on + strand, within MPMX19_05310at 847.353 kb on + strand, within MPMX19_05310at 847.354 kb on - strand, within MPMX19_05310at 847.354 kb on - strand, within MPMX19_05310at 847.354 kb on - strand, within MPMX19_05310at 847.354 kb on - strand, within MPMX19_05310at 847.354 kb on - strand, within MPMX19_05310at 847.354 kb on - strand, within MPMX19_05310at 847.354 kb on - strand, within MPMX19_05310at 847.354 kb on - strand, within MPMX19_05310at 847.354 kb on - strand, within MPMX19_05310at 847.354 kb on - strand, within MPMX19_05310at 847.354 kb on - strand, within MPMX19_05310at 847.470 kb on - strand, within MPMX19_05310at 847.470 kb on - strand, within MPMX19_05310at 847.547 kb on + strand, within MPMX19_05310at 847.547 kb on + strand, within MPMX19_05310at 847.547 kb on + strand, within MPMX19_05310at 847.548 kb on - strand, within MPMX19_05310at 847.548 kb on - strand, within MPMX19_05310at 847.676 kb on - strandat 847.820 kb on + strandat 847.820 kb on + strandat 847.820 kb on + strandat 847.820 kb on + strandat 847.820 kb on + strandat 847.820 kb on + strandat 847.820 kb on + strandat 847.820 kb on + strandat 847.820 kb on + strandat 847.820 kb on + strandat 847.820 kb on + strandat 847.821 kb on - strandat 847.821 kb on - strandat 847.821 kb on - strandat 847.821 kb on - strandat 847.821 kb on - strandat 847.821 kb on - strandat 847.821 kb on - strandat 847.821 kb on - strandat 847.821 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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844,720 + -0.5
844,720 + -1.4
844,720 + -1.2
844,720 + -3.0
844,720 + +0.3
844,721 - +0.3
844,721 - -1.3
844,721 - -1.1
844,721 - -1.6
844,721 - +0.4
844,734 + -0.5
844,734 + +0.2
844,735 - +0.4
844,735 - -1.3
844,784 - -0.8
844,915 + MPMX19_05308 0.11 +1.5
844,915 + MPMX19_05308 0.11 -2.0
844,915 + MPMX19_05308 0.11 +0.3
844,915 + MPMX19_05308 0.11 -2.3
844,915 + MPMX19_05308 0.11 -0.6
844,916 - MPMX19_05308 0.11 +0.3
844,951 + MPMX19_05308 0.15 +2.3
844,951 + MPMX19_05308 0.15 -0.5
844,951 + MPMX19_05308 0.15 -2.0
844,951 + MPMX19_05308 0.15 +0.7
844,951 + MPMX19_05308 0.15 -1.4
844,951 + MPMX19_05308 0.15 +1.3
844,951 + MPMX19_05308 0.15 -0.7
844,951 + MPMX19_05308 0.15 +1.5
844,951 + MPMX19_05308 0.15 +0.3
844,951 + MPMX19_05308 0.15 -0.8
844,952 - MPMX19_05308 0.15 -0.9
844,952 - MPMX19_05308 0.15 -0.4
844,952 - MPMX19_05308 0.15 -0.7
844,952 - MPMX19_05308 0.15 -0.0
844,952 - MPMX19_05308 0.15 -1.3
844,952 - MPMX19_05308 0.15 -0.2
844,952 - MPMX19_05308 0.15 -0.8
844,952 - MPMX19_05308 0.15 -0.0
844,952 - MPMX19_05308 0.15 -0.3
845,032 + MPMX19_05308 0.25 -0.4
845,032 + MPMX19_05308 0.25 +0.5
845,032 + MPMX19_05308 0.25 +0.9
845,032 + MPMX19_05308 0.25 +1.4
845,032 + MPMX19_05308 0.25 -1.8
845,032 + MPMX19_05308 0.25 -1.0
845,032 + MPMX19_05308 0.25 -0.1
845,032 + MPMX19_05308 0.25 +0.7
845,032 + MPMX19_05308 0.25 +1.3
845,033 - MPMX19_05308 0.25 -1.7
845,033 - MPMX19_05308 0.25 -1.8
845,033 - MPMX19_05308 0.25 -1.8
845,033 - MPMX19_05308 0.25 -0.4
845,033 - MPMX19_05308 0.25 -1.9
845,033 - MPMX19_05308 0.25 +0.4
845,033 - MPMX19_05308 0.25 -0.5
845,033 - MPMX19_05308 0.25 +0.1
845,033 - MPMX19_05308 0.25 -2.7
845,033 - MPMX19_05308 0.25 -0.9
845,035 + MPMX19_05308 0.26 +0.7
845,035 + MPMX19_05308 0.26 -1.3
845,035 + MPMX19_05308 0.26 +0.1
845,035 + MPMX19_05308 0.26 +0.2
845,035 + MPMX19_05308 0.26 +0.9
845,035 + MPMX19_05308 0.26 +0.3
845,036 - MPMX19_05308 0.26 -2.0
845,036 - MPMX19_05308 0.26 -2.2
845,036 - MPMX19_05308 0.26 -0.0
845,646 + -0.7
845,725 - -0.5
846,075 + MPMX19_05309 0.33 -1.0
846,075 + MPMX19_05309 0.33 -0.9
846,075 + MPMX19_05309 0.33 +0.7
846,075 + MPMX19_05309 0.33 -1.9
846,076 - MPMX19_05309 0.33 -1.2
846,076 - MPMX19_05309 0.33 -1.3
846,076 - MPMX19_05309 0.33 -1.4
846,076 - MPMX19_05309 0.33 +0.9
846,076 - MPMX19_05309 0.33 -0.3
846,076 - MPMX19_05309 0.33 -0.9
846,207 + MPMX19_05309 0.45 -0.9
846,207 + MPMX19_05309 0.45 +0.7
846,207 + MPMX19_05309 0.45 -0.9
846,207 + MPMX19_05309 0.45 +0.4
846,207 + MPMX19_05309 0.45 -1.9
846,208 - MPMX19_05309 0.45 -2.0
846,208 - MPMX19_05309 0.45 -1.8
846,208 - MPMX19_05309 0.45 -1.0
846,208 - MPMX19_05309 0.45 -0.4
846,208 - MPMX19_05309 0.45 -0.3
846,208 - MPMX19_05309 0.45 +0.2
846,989 + MPMX19_05310 0.17 -0.8
846,989 + MPMX19_05310 0.17 +0.2
846,989 + MPMX19_05310 0.17 +3.0
846,989 + MPMX19_05310 0.17 +0.5
846,989 + MPMX19_05310 0.17 -0.7
846,989 + MPMX19_05310 0.17 -0.8
846,989 + MPMX19_05310 0.17 -1.2
846,989 + MPMX19_05310 0.17 -0.7
846,989 + MPMX19_05310 0.17 -1.4
846,990 - MPMX19_05310 0.17 -0.7
846,990 - MPMX19_05310 0.17 -1.3
846,990 - MPMX19_05310 0.17 +1.7
846,990 - MPMX19_05310 0.17 +0.3
846,990 - MPMX19_05310 0.17 +0.7
846,990 - MPMX19_05310 0.17 -1.7
846,990 - MPMX19_05310 0.17 +0.3
846,990 - MPMX19_05310 0.17 -1.8
846,990 - MPMX19_05310 0.17 +0.7
847,205 + MPMX19_05310 0.42 -1.1
847,206 - MPMX19_05310 0.43 -1.3
847,353 + MPMX19_05310 0.60 -0.7
847,353 + MPMX19_05310 0.60 -0.9
847,353 + MPMX19_05310 0.60 -0.7
847,354 - MPMX19_05310 0.60 +1.5
847,354 - MPMX19_05310 0.60 -2.7
847,354 - MPMX19_05310 0.60 +0.3
847,354 - MPMX19_05310 0.60 +0.7
847,354 - MPMX19_05310 0.60 +0.2
847,354 - MPMX19_05310 0.60 -1.3
847,354 - MPMX19_05310 0.60 -0.0
847,354 - MPMX19_05310 0.60 -0.4
847,354 - MPMX19_05310 0.60 -0.7
847,354 - MPMX19_05310 0.60 -0.7
847,354 - MPMX19_05310 0.60 -0.7
847,470 - MPMX19_05310 0.73 -0.7
847,470 - MPMX19_05310 0.73 -0.3
847,547 + MPMX19_05310 0.82 -1.3
847,547 + MPMX19_05310 0.82 +0.1
847,547 + MPMX19_05310 0.82 -1.3
847,548 - MPMX19_05310 0.82 +1.2
847,548 - MPMX19_05310 0.82 +3.0
847,676 - -0.5
847,820 + -1.1
847,820 + -0.6
847,820 + -0.1
847,820 + -0.1
847,820 + -1.5
847,820 + -0.0
847,820 + -1.9
847,820 + +0.7
847,820 + -0.3
847,820 + +0.4
847,820 + -0.3
847,821 - -0.7
847,821 - +0.2
847,821 - -1.7
847,821 - -2.0
847,821 - -1.5
847,821 - -0.8
847,821 - -2.4
847,821 - -1.2
847,821 - -0.1

Or see this region's nucleotide sequence