Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05306 and MPMX19_05307 are separated by 325 nucleotides MPMX19_05307 and MPMX19_05308 are separated by 105 nucleotides MPMX19_05308 and MPMX19_05309 are separated by 55 nucleotides
MPMX19_05306: MPMX19_05306 - RCS-specific HTH-type transcriptional activator RclR, at 841,839 to 842,753
_05306
MPMX19_05307: MPMX19_05307 - hypothetical protein, at 843,079 to 844,722
_05307
MPMX19_05308: MPMX19_05308 - Nucleoside triphosphate pyrophosphohydrolase, at 844,828 to 845,637
_05308
MPMX19_05309: MPMX19_05309 - 4,4'-diaponeurosporenoate glycosyltransferase, at 845,693 to 846,844
_05309
Position (kb) 843
844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 842.141 kb on + strand, within MPMX19_05306 at 842.141 kb on + strand, within MPMX19_05306 at 842.142 kb on - strand, within MPMX19_05306 at 842.510 kb on + strand, within MPMX19_05306 at 842.510 kb on + strand, within MPMX19_05306 at 842.510 kb on + strand, within MPMX19_05306 at 842.510 kb on + strand, within MPMX19_05306 at 842.510 kb on + strand, within MPMX19_05306 at 842.511 kb on - strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.646 kb on + strand, within MPMX19_05306 at 842.647 kb on - strand, within MPMX19_05306 at 842.690 kb on + strand at 842.690 kb on + strand at 842.691 kb on - strand at 842.691 kb on - strand at 842.795 kb on + strand at 842.874 kb on + strand at 842.874 kb on + strand at 842.874 kb on + strand at 842.875 kb on - strand at 842.875 kb on - strand at 842.884 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.923 kb on - strand at 842.923 kb on - strand at 842.967 kb on + strand at 842.968 kb on - strand at 842.996 kb on - strand at 842.996 kb on - strand at 842.996 kb on - strand at 842.996 kb on - strand at 843.026 kb on + strand at 843.026 kb on + strand at 843.026 kb on + strand at 843.026 kb on + strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.114 kb on + strand at 843.499 kb on + strand, within MPMX19_05307 at 843.499 kb on + strand, within MPMX19_05307 at 843.499 kb on + strand, within MPMX19_05307 at 843.499 kb on + strand, within MPMX19_05307 at 843.499 kb on + strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.771 kb on + strand, within MPMX19_05307 at 843.771 kb on + strand, within MPMX19_05307 at 843.771 kb on + strand, within MPMX19_05307 at 843.771 kb on + strand, within MPMX19_05307 at 843.771 kb on + strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.223 kb on - strand, within MPMX19_05307 at 844.223 kb on - strand, within MPMX19_05307 at 844.613 kb on - strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.684 kb on - strand at 844.720 kb on + strand at 844.720 kb on + strand at 844.720 kb on + strand at 844.720 kb on + strand at 844.720 kb on + strand at 844.721 kb on - strand at 844.721 kb on - strand at 844.721 kb on - strand at 844.721 kb on - strand at 844.721 kb on - strand at 844.734 kb on + strand at 844.734 kb on + strand at 844.735 kb on - strand at 844.735 kb on - strand at 844.784 kb on - strand at 844.915 kb on + strand, within MPMX19_05308 at 844.915 kb on + strand, within MPMX19_05308 at 844.915 kb on + strand, within MPMX19_05308 at 844.915 kb on + strand, within MPMX19_05308 at 844.915 kb on + strand, within MPMX19_05308 at 844.916 kb on - strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.036 kb on - strand, within MPMX19_05308 at 845.036 kb on - strand, within MPMX19_05308 at 845.036 kb on - strand, within MPMX19_05308 at 845.646 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 842,141 + MPMX19_05306 0.33 +2.3 842,141 + MPMX19_05306 0.33 -1.3 842,142 - MPMX19_05306 0.33 +0.5 842,510 + MPMX19_05306 0.73 -1.3 842,510 + MPMX19_05306 0.73 -0.0 842,510 + MPMX19_05306 0.73 -2.9 842,510 + MPMX19_05306 0.73 -1.3 842,510 + MPMX19_05306 0.73 -0.3 842,511 - MPMX19_05306 0.73 -0.7 842,571 + MPMX19_05306 0.80 -0.5 842,571 + MPMX19_05306 0.80 +1.2 842,571 + MPMX19_05306 0.80 +1.7 842,571 + MPMX19_05306 0.80 -1.1 842,571 + MPMX19_05306 0.80 -1.0 842,571 + MPMX19_05306 0.80 +0.1 842,571 + MPMX19_05306 0.80 +0.8 842,571 + MPMX19_05306 0.80 -1.5 842,571 + MPMX19_05306 0.80 -0.9 842,571 + MPMX19_05306 0.80 +1.4 842,571 + MPMX19_05306 0.80 -1.8 842,571 + MPMX19_05306 0.80 -1.0 842,572 - MPMX19_05306 0.80 -0.1 842,572 - MPMX19_05306 0.80 -2.1 842,572 - MPMX19_05306 0.80 -1.1 842,572 - MPMX19_05306 0.80 +0.2 842,572 - MPMX19_05306 0.80 +0.1 842,572 - MPMX19_05306 0.80 +1.7 842,572 - MPMX19_05306 0.80 -0.7 842,572 - MPMX19_05306 0.80 -1.8 842,572 - MPMX19_05306 0.80 -0.5 842,572 - MPMX19_05306 0.80 +0.7 842,572 - MPMX19_05306 0.80 +1.3 842,572 - MPMX19_05306 0.80 -0.9 842,572 - MPMX19_05306 0.80 -1.8 842,646 + MPMX19_05306 0.88 +0.9 842,647 - MPMX19_05306 0.88 -2.4 842,690 + +0.9 842,690 + -0.0 842,691 - -1.2 842,691 - -1.1 842,795 + +0.3 842,874 + -1.3 842,874 + -0.1 842,874 + -0.2 842,875 - -1.8 842,875 - +0.8 842,884 + -0.2 842,922 + -0.1 842,922 + -0.8 842,922 + -3.5 842,922 + -0.3 842,922 + -1.5 842,922 + -1.7 842,922 + +0.6 842,922 + +0.1 842,923 - -1.1 842,923 - -0.3 842,967 + -1.7 842,968 - +0.5 842,996 - -1.1 842,996 - -0.1 842,996 - +1.0 842,996 - -0.3 843,026 + -1.1 843,026 + -2.4 843,026 + -0.1 843,026 + -0.4 843,027 - -0.5 843,027 - -0.2 843,027 - -0.3 843,027 - -0.3 843,027 - -0.8 843,027 - -1.2 843,027 - -0.4 843,027 - -0.6 843,027 - +0.4 843,027 - -2.1 843,027 - +0.3 843,027 - -0.3 843,027 - -1.8 843,114 + -1.4 843,499 + MPMX19_05307 0.26 -0.8 843,499 + MPMX19_05307 0.26 -0.3 843,499 + MPMX19_05307 0.26 -0.1 843,499 + MPMX19_05307 0.26 -1.1 843,499 + MPMX19_05307 0.26 -0.0 843,500 - MPMX19_05307 0.26 -0.7 843,500 - MPMX19_05307 0.26 -0.8 843,500 - MPMX19_05307 0.26 +0.7 843,500 - MPMX19_05307 0.26 -0.1 843,500 - MPMX19_05307 0.26 -1.1 843,500 - MPMX19_05307 0.26 +0.0 843,500 - MPMX19_05307 0.26 -0.7 843,500 - MPMX19_05307 0.26 +1.0 843,771 + MPMX19_05307 0.42 -0.8 843,771 + MPMX19_05307 0.42 -1.8 843,771 + MPMX19_05307 0.42 -1.7 843,771 + MPMX19_05307 0.42 -0.8 843,771 + MPMX19_05307 0.42 -0.1 843,772 - MPMX19_05307 0.42 +0.5 843,772 - MPMX19_05307 0.42 +0.3 843,772 - MPMX19_05307 0.42 -0.7 843,772 - MPMX19_05307 0.42 -1.9 843,772 - MPMX19_05307 0.42 -0.4 843,772 - MPMX19_05307 0.42 -0.7 843,772 - MPMX19_05307 0.42 -1.0 843,772 - MPMX19_05307 0.42 -1.3 843,772 - MPMX19_05307 0.42 +0.1 844,186 + MPMX19_05307 0.67 +0.9 844,186 + MPMX19_05307 0.67 -0.4 844,186 + MPMX19_05307 0.67 +0.8 844,186 + MPMX19_05307 0.67 -1.8 844,186 + MPMX19_05307 0.67 +0.5 844,186 + MPMX19_05307 0.67 -1.9 844,186 + MPMX19_05307 0.67 -1.4 844,186 + MPMX19_05307 0.67 -0.5 844,186 + MPMX19_05307 0.67 -0.3 844,187 - MPMX19_05307 0.67 -0.0 844,187 - MPMX19_05307 0.67 -0.8 844,187 - MPMX19_05307 0.67 +0.3 844,187 - MPMX19_05307 0.67 +0.5 844,187 - MPMX19_05307 0.67 -0.5 844,187 - MPMX19_05307 0.67 -0.6 844,187 - MPMX19_05307 0.67 -1.2 844,223 - MPMX19_05307 0.70 -1.9 844,223 - MPMX19_05307 0.70 -0.9 844,613 - +1.6 844,630 + -1.8 844,630 + -0.9 844,630 + +0.1 844,630 + -1.5 844,630 + -0.9 844,630 + -1.1 844,630 + +0.3 844,630 + +0.7 844,630 + -0.0 844,630 + -1.7 844,630 + +0.2 844,631 - +0.3 844,631 - -0.3 844,631 - -1.1 844,631 - +0.3 844,631 - +0.2 844,631 - -0.9 844,631 - -1.1 844,631 - +0.4 844,631 - -0.2 844,631 - -0.1 844,684 - -0.3 844,720 + -0.5 844,720 + -1.4 844,720 + -1.2 844,720 + -3.0 844,720 + +0.3 844,721 - +0.3 844,721 - -1.3 844,721 - -1.1 844,721 - -1.6 844,721 - +0.4 844,734 + -0.5 844,734 + +0.2 844,735 - +0.4 844,735 - -1.3 844,784 - -0.8 844,915 + MPMX19_05308 0.11 +1.5 844,915 + MPMX19_05308 0.11 -2.0 844,915 + MPMX19_05308 0.11 +0.3 844,915 + MPMX19_05308 0.11 -2.3 844,915 + MPMX19_05308 0.11 -0.6 844,916 - MPMX19_05308 0.11 +0.3 844,951 + MPMX19_05308 0.15 +2.3 844,951 + MPMX19_05308 0.15 -0.5 844,951 + MPMX19_05308 0.15 -2.0 844,951 + MPMX19_05308 0.15 +0.7 844,951 + MPMX19_05308 0.15 -1.4 844,951 + MPMX19_05308 0.15 +1.3 844,951 + MPMX19_05308 0.15 -0.7 844,951 + MPMX19_05308 0.15 +1.5 844,951 + MPMX19_05308 0.15 +0.3 844,951 + MPMX19_05308 0.15 -0.8 844,952 - MPMX19_05308 0.15 -0.9 844,952 - MPMX19_05308 0.15 -0.4 844,952 - MPMX19_05308 0.15 -0.7 844,952 - MPMX19_05308 0.15 -0.0 844,952 - MPMX19_05308 0.15 -1.3 844,952 - MPMX19_05308 0.15 -0.2 844,952 - MPMX19_05308 0.15 -0.8 844,952 - MPMX19_05308 0.15 -0.0 844,952 - MPMX19_05308 0.15 -0.3 845,032 + MPMX19_05308 0.25 -0.4 845,032 + MPMX19_05308 0.25 +0.5 845,032 + MPMX19_05308 0.25 +0.9 845,032 + MPMX19_05308 0.25 +1.4 845,032 + MPMX19_05308 0.25 -1.8 845,032 + MPMX19_05308 0.25 -1.0 845,032 + MPMX19_05308 0.25 -0.1 845,032 + MPMX19_05308 0.25 +0.7 845,032 + MPMX19_05308 0.25 +1.3 845,033 - MPMX19_05308 0.25 -1.7 845,033 - MPMX19_05308 0.25 -1.8 845,033 - MPMX19_05308 0.25 -1.8 845,033 - MPMX19_05308 0.25 -0.4 845,033 - MPMX19_05308 0.25 -1.9 845,033 - MPMX19_05308 0.25 +0.4 845,033 - MPMX19_05308 0.25 -0.5 845,033 - MPMX19_05308 0.25 +0.1 845,033 - MPMX19_05308 0.25 -2.7 845,033 - MPMX19_05308 0.25 -0.9 845,035 + MPMX19_05308 0.26 +0.7 845,035 + MPMX19_05308 0.26 -1.3 845,035 + MPMX19_05308 0.26 +0.1 845,035 + MPMX19_05308 0.26 +0.2 845,035 + MPMX19_05308 0.26 +0.9 845,035 + MPMX19_05308 0.26 +0.3 845,036 - MPMX19_05308 0.26 -2.0 845,036 - MPMX19_05308 0.26 -2.2 845,036 - MPMX19_05308 0.26 -0.0 845,646 + -0.7
Or see this region's nucleotide sequence