Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05306

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05305 and MPMX19_05306 are separated by 179 nucleotidesMPMX19_05306 and MPMX19_05307 are separated by 325 nucleotides MPMX19_05305: MPMX19_05305 - Purine ribonucleoside efflux pump NepI, at 840,490 to 841,659 _05305 MPMX19_05306: MPMX19_05306 - RCS-specific HTH-type transcriptional activator RclR, at 841,839 to 842,753 _05306 MPMX19_05307: MPMX19_05307 - hypothetical protein, at 843,079 to 844,722 _05307 Position (kb) 841 842 843Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 840.929 kb on - strand, within MPMX19_05305at 840.977 kb on + strand, within MPMX19_05305at 840.977 kb on + strand, within MPMX19_05305at 840.977 kb on + strand, within MPMX19_05305at 840.977 kb on + strand, within MPMX19_05305at 840.977 kb on + strand, within MPMX19_05305at 840.977 kb on + strand, within MPMX19_05305at 840.977 kb on + strand, within MPMX19_05305at 840.977 kb on + strand, within MPMX19_05305at 840.977 kb on + strand, within MPMX19_05305at 840.977 kb on + strand, within MPMX19_05305at 840.977 kb on + strand, within MPMX19_05305at 840.978 kb on - strand, within MPMX19_05305at 840.978 kb on - strand, within MPMX19_05305at 840.978 kb on - strand, within MPMX19_05305at 840.978 kb on - strand, within MPMX19_05305at 840.978 kb on - strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.193 kb on + strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.194 kb on - strand, within MPMX19_05305at 841.330 kb on + strand, within MPMX19_05305at 841.331 kb on - strand, within MPMX19_05305at 841.704 kb on + strandat 841.704 kb on + strandat 841.704 kb on + strandat 841.704 kb on + strandat 841.704 kb on + strandat 841.705 kb on - strandat 841.705 kb on - strandat 841.705 kb on - strandat 841.705 kb on - strandat 841.705 kb on - strandat 841.705 kb on - strandat 841.705 kb on - strandat 841.705 kb on - strandat 841.705 kb on - strandat 841.734 kb on + strandat 841.744 kb on - strandat 841.766 kb on + strandat 841.846 kb on + strandat 841.846 kb on + strandat 841.847 kb on - strandat 841.848 kb on + strandat 841.849 kb on - strandat 842.141 kb on + strand, within MPMX19_05306at 842.141 kb on + strand, within MPMX19_05306at 842.142 kb on - strand, within MPMX19_05306at 842.510 kb on + strand, within MPMX19_05306at 842.510 kb on + strand, within MPMX19_05306at 842.510 kb on + strand, within MPMX19_05306at 842.510 kb on + strand, within MPMX19_05306at 842.510 kb on + strand, within MPMX19_05306at 842.511 kb on - strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.571 kb on + strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.572 kb on - strand, within MPMX19_05306at 842.646 kb on + strand, within MPMX19_05306at 842.647 kb on - strand, within MPMX19_05306at 842.690 kb on + strandat 842.690 kb on + strandat 842.691 kb on - strandat 842.691 kb on - strandat 842.795 kb on + strandat 842.874 kb on + strandat 842.874 kb on + strandat 842.874 kb on + strandat 842.875 kb on - strandat 842.875 kb on - strandat 842.884 kb on + strandat 842.922 kb on + strandat 842.922 kb on + strandat 842.922 kb on + strandat 842.922 kb on + strandat 842.922 kb on + strandat 842.922 kb on + strandat 842.922 kb on + strandat 842.922 kb on + strandat 842.923 kb on - strandat 842.923 kb on - strandat 842.967 kb on + strandat 842.968 kb on - strandat 842.996 kb on - strandat 842.996 kb on - strandat 842.996 kb on - strandat 842.996 kb on - strandat 843.026 kb on + strandat 843.026 kb on + strandat 843.026 kb on + strandat 843.026 kb on + strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.027 kb on - strandat 843.114 kb on + strandat 843.499 kb on + strand, within MPMX19_05307at 843.499 kb on + strand, within MPMX19_05307at 843.499 kb on + strand, within MPMX19_05307at 843.499 kb on + strand, within MPMX19_05307at 843.499 kb on + strand, within MPMX19_05307at 843.500 kb on - strand, within MPMX19_05307at 843.500 kb on - strand, within MPMX19_05307at 843.500 kb on - strand, within MPMX19_05307at 843.500 kb on - strand, within MPMX19_05307at 843.500 kb on - strand, within MPMX19_05307at 843.500 kb on - strand, within MPMX19_05307at 843.500 kb on - strand, within MPMX19_05307at 843.500 kb on - strand, within MPMX19_05307

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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840,929 - MPMX19_05305 0.38 -0.8
840,977 + MPMX19_05305 0.42 -0.2
840,977 + MPMX19_05305 0.42 -0.3
840,977 + MPMX19_05305 0.42 +1.7
840,977 + MPMX19_05305 0.42 +0.7
840,977 + MPMX19_05305 0.42 -1.4
840,977 + MPMX19_05305 0.42 +0.8
840,977 + MPMX19_05305 0.42 +0.7
840,977 + MPMX19_05305 0.42 -1.3
840,977 + MPMX19_05305 0.42 +1.2
840,977 + MPMX19_05305 0.42 -0.1
840,977 + MPMX19_05305 0.42 -0.4
840,978 - MPMX19_05305 0.42 -1.4
840,978 - MPMX19_05305 0.42 +0.4
840,978 - MPMX19_05305 0.42 -1.4
840,978 - MPMX19_05305 0.42 -1.8
840,978 - MPMX19_05305 0.42 -0.3
841,193 + MPMX19_05305 0.60 -1.3
841,193 + MPMX19_05305 0.60 -1.0
841,193 + MPMX19_05305 0.60 -1.7
841,193 + MPMX19_05305 0.60 -0.8
841,193 + MPMX19_05305 0.60 -2.1
841,193 + MPMX19_05305 0.60 +0.4
841,193 + MPMX19_05305 0.60 +0.4
841,193 + MPMX19_05305 0.60 +0.9
841,193 + MPMX19_05305 0.60 -2.3
841,193 + MPMX19_05305 0.60 -0.1
841,193 + MPMX19_05305 0.60 -1.5
841,193 + MPMX19_05305 0.60 -0.3
841,193 + MPMX19_05305 0.60 -0.3
841,193 + MPMX19_05305 0.60 +0.1
841,193 + MPMX19_05305 0.60 -0.2
841,193 + MPMX19_05305 0.60 -0.1
841,193 + MPMX19_05305 0.60 +0.1
841,193 + MPMX19_05305 0.60 +1.3
841,193 + MPMX19_05305 0.60 -0.3
841,194 - MPMX19_05305 0.60 +0.1
841,194 - MPMX19_05305 0.60 -0.9
841,194 - MPMX19_05305 0.60 -1.4
841,194 - MPMX19_05305 0.60 -0.5
841,194 - MPMX19_05305 0.60 -2.3
841,194 - MPMX19_05305 0.60 +0.3
841,194 - MPMX19_05305 0.60 -0.5
841,194 - MPMX19_05305 0.60 +0.4
841,194 - MPMX19_05305 0.60 -0.7
841,194 - MPMX19_05305 0.60 -0.5
841,194 - MPMX19_05305 0.60 +0.1
841,194 - MPMX19_05305 0.60 -1.7
841,194 - MPMX19_05305 0.60 -0.8
841,194 - MPMX19_05305 0.60 -0.7
841,194 - MPMX19_05305 0.60 -0.4
841,194 - MPMX19_05305 0.60 +1.5
841,194 - MPMX19_05305 0.60 -1.8
841,194 - MPMX19_05305 0.60 +0.3
841,194 - MPMX19_05305 0.60 -1.3
841,194 - MPMX19_05305 0.60 -2.0
841,194 - MPMX19_05305 0.60 -0.3
841,194 - MPMX19_05305 0.60 -0.8
841,330 + MPMX19_05305 0.72 +0.1
841,331 - MPMX19_05305 0.72 -1.8
841,704 + -1.7
841,704 + -1.8
841,704 + -2.0
841,704 + +0.4
841,704 + -0.5
841,705 - -0.1
841,705 - -2.0
841,705 - +0.3
841,705 - -2.1
841,705 - +0.1
841,705 - -1.4
841,705 - -1.3
841,705 - +0.9
841,705 - -0.7
841,734 + +1.2
841,744 - -0.7
841,766 + -1.1
841,846 + +0.1
841,846 + +0.3
841,847 - +0.4
841,848 + -1.0
841,849 - -1.3
842,141 + MPMX19_05306 0.33 +2.3
842,141 + MPMX19_05306 0.33 -1.3
842,142 - MPMX19_05306 0.33 +0.5
842,510 + MPMX19_05306 0.73 -1.3
842,510 + MPMX19_05306 0.73 -0.0
842,510 + MPMX19_05306 0.73 -2.9
842,510 + MPMX19_05306 0.73 -1.3
842,510 + MPMX19_05306 0.73 -0.3
842,511 - MPMX19_05306 0.73 -0.7
842,571 + MPMX19_05306 0.80 -0.5
842,571 + MPMX19_05306 0.80 +1.2
842,571 + MPMX19_05306 0.80 +1.7
842,571 + MPMX19_05306 0.80 -1.1
842,571 + MPMX19_05306 0.80 -1.0
842,571 + MPMX19_05306 0.80 +0.1
842,571 + MPMX19_05306 0.80 +0.8
842,571 + MPMX19_05306 0.80 -1.5
842,571 + MPMX19_05306 0.80 -0.9
842,571 + MPMX19_05306 0.80 +1.4
842,571 + MPMX19_05306 0.80 -1.8
842,571 + MPMX19_05306 0.80 -1.0
842,572 - MPMX19_05306 0.80 -0.1
842,572 - MPMX19_05306 0.80 -2.1
842,572 - MPMX19_05306 0.80 -1.1
842,572 - MPMX19_05306 0.80 +0.2
842,572 - MPMX19_05306 0.80 +0.1
842,572 - MPMX19_05306 0.80 +1.7
842,572 - MPMX19_05306 0.80 -0.7
842,572 - MPMX19_05306 0.80 -1.8
842,572 - MPMX19_05306 0.80 -0.5
842,572 - MPMX19_05306 0.80 +0.7
842,572 - MPMX19_05306 0.80 +1.3
842,572 - MPMX19_05306 0.80 -0.9
842,572 - MPMX19_05306 0.80 -1.8
842,646 + MPMX19_05306 0.88 +0.9
842,647 - MPMX19_05306 0.88 -2.4
842,690 + +0.9
842,690 + -0.0
842,691 - -1.2
842,691 - -1.1
842,795 + +0.3
842,874 + -1.3
842,874 + -0.1
842,874 + -0.2
842,875 - -1.8
842,875 - +0.8
842,884 + -0.2
842,922 + -0.1
842,922 + -0.8
842,922 + -3.5
842,922 + -0.3
842,922 + -1.5
842,922 + -1.7
842,922 + +0.6
842,922 + +0.1
842,923 - -1.1
842,923 - -0.3
842,967 + -1.7
842,968 - +0.5
842,996 - -1.1
842,996 - -0.1
842,996 - +1.0
842,996 - -0.3
843,026 + -1.1
843,026 + -2.4
843,026 + -0.1
843,026 + -0.4
843,027 - -0.5
843,027 - -0.2
843,027 - -0.3
843,027 - -0.3
843,027 - -0.8
843,027 - -1.2
843,027 - -0.4
843,027 - -0.6
843,027 - +0.4
843,027 - -2.1
843,027 - +0.3
843,027 - -0.3
843,027 - -1.8
843,114 + -1.4
843,499 + MPMX19_05307 0.26 -0.8
843,499 + MPMX19_05307 0.26 -0.3
843,499 + MPMX19_05307 0.26 -0.1
843,499 + MPMX19_05307 0.26 -1.1
843,499 + MPMX19_05307 0.26 -0.0
843,500 - MPMX19_05307 0.26 -0.7
843,500 - MPMX19_05307 0.26 -0.8
843,500 - MPMX19_05307 0.26 +0.7
843,500 - MPMX19_05307 0.26 -0.1
843,500 - MPMX19_05307 0.26 -1.1
843,500 - MPMX19_05307 0.26 +0.0
843,500 - MPMX19_05307 0.26 -0.7
843,500 - MPMX19_05307 0.26 +1.0

Or see this region's nucleotide sequence