Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05293 and MPMX19_05294 overlap by 4 nucleotides MPMX19_05294 and MPMX19_05295 are separated by 4 nucleotides MPMX19_05295 and MPMX19_05296 are separated by 19 nucleotides MPMX19_05296 and MPMX19_05297 are separated by 213 nucleotides
MPMX19_05293: MPMX19_05293 - hypothetical protein, at 828,238 to 829,122
_05293
MPMX19_05294: MPMX19_05294 - hypothetical protein, at 829,119 to 829,547
_05294
MPMX19_05295: MPMX19_05295 - hypothetical protein, at 829,552 to 829,863
_05295
MPMX19_05296: MPMX19_05296 - Hydrogenase 1 maturation protease, at 829,883 to 830,533
_05296
MPMX19_05297: MPMX19_05297 - hypothetical protein, at 830,747 to 832,042
_05297
Position (kb) 829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 829.007 kb on + strand, within MPMX19_05293 at 829.007 kb on + strand, within MPMX19_05293 at 829.008 kb on - strand, within MPMX19_05293 at 829.008 kb on - strand, within MPMX19_05293 at 829.037 kb on + strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294 at 829.465 kb on + strand, within MPMX19_05294 at 829.466 kb on - strand, within MPMX19_05294 at 829.466 kb on - strand, within MPMX19_05294 at 829.466 kb on - strand, within MPMX19_05294 at 829.466 kb on - strand, within MPMX19_05294 at 829.466 kb on - strand, within MPMX19_05294 at 829.720 kb on - strand, within MPMX19_05295 at 829.720 kb on - strand, within MPMX19_05295 at 829.720 kb on - strand, within MPMX19_05295 at 829.968 kb on + strand, within MPMX19_05296 at 829.968 kb on + strand, within MPMX19_05296 at 829.968 kb on + strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 830.118 kb on + strand, within MPMX19_05296 at 830.118 kb on + strand, within MPMX19_05296 at 830.118 kb on + strand, within MPMX19_05296 at 830.119 kb on - strand, within MPMX19_05296 at 830.119 kb on - strand, within MPMX19_05296 at 830.180 kb on + strand, within MPMX19_05296 at 830.180 kb on + strand, within MPMX19_05296 at 830.180 kb on + strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.301 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.589 kb on + strand at 830.589 kb on + strand at 830.589 kb on + strand at 830.589 kb on + strand at 830.589 kb on + strand at 830.590 kb on - strand at 830.642 kb on + strand at 830.643 kb on - strand at 830.667 kb on - strand at 830.667 kb on - strand at 830.692 kb on - strand at 830.692 kb on - strand at 830.692 kb on - strand at 830.727 kb on + strand at 830.727 kb on + strand at 830.728 kb on - strand at 830.728 kb on - strand at 830.809 kb on + strand at 830.809 kb on + strand at 830.809 kb on + strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 829,007 + MPMX19_05293 0.87 -0.6 829,007 + MPMX19_05293 0.87 -0.7 829,008 - MPMX19_05293 0.87 -2.0 829,008 - MPMX19_05293 0.87 +1.0 829,037 + -0.1 829,038 - -1.9 829,038 - -0.2 829,038 - -0.8 829,038 - +1.1 829,038 - -0.5 829,038 - +0.1 829,038 - -0.7 829,038 - -0.7 829,174 + MPMX19_05294 0.13 +0.5 829,174 + MPMX19_05294 0.13 -0.5 829,174 + MPMX19_05294 0.13 -0.1 829,174 + MPMX19_05294 0.13 +0.0 829,174 + MPMX19_05294 0.13 -3.5 829,175 - MPMX19_05294 0.13 +2.0 829,175 - MPMX19_05294 0.13 +0.5 829,175 - MPMX19_05294 0.13 -2.0 829,465 + MPMX19_05294 0.81 -0.3 829,466 - MPMX19_05294 0.81 -1.9 829,466 - MPMX19_05294 0.81 +0.5 829,466 - MPMX19_05294 0.81 -0.2 829,466 - MPMX19_05294 0.81 -1.2 829,466 - MPMX19_05294 0.81 -1.5 829,720 - MPMX19_05295 0.54 -0.9 829,720 - MPMX19_05295 0.54 +0.7 829,720 - MPMX19_05295 0.54 -0.8 829,968 + MPMX19_05296 0.13 -0.0 829,968 + MPMX19_05296 0.13 -0.3 829,968 + MPMX19_05296 0.13 -0.0 829,969 - MPMX19_05296 0.13 -1.5 829,969 - MPMX19_05296 0.13 +0.7 829,969 - MPMX19_05296 0.13 -1.5 829,969 - MPMX19_05296 0.13 -1.2 829,969 - MPMX19_05296 0.13 -1.4 830,118 + MPMX19_05296 0.36 +0.2 830,118 + MPMX19_05296 0.36 -1.1 830,118 + MPMX19_05296 0.36 +0.7 830,119 - MPMX19_05296 0.36 +0.1 830,119 - MPMX19_05296 0.36 -0.8 830,180 + MPMX19_05296 0.46 +0.7 830,180 + MPMX19_05296 0.46 +0.9 830,180 + MPMX19_05296 0.46 -1.2 830,181 - MPMX19_05296 0.46 -0.5 830,181 - MPMX19_05296 0.46 -1.9 830,181 - MPMX19_05296 0.46 -1.8 830,181 - MPMX19_05296 0.46 +0.4 830,301 + MPMX19_05296 0.64 -0.5 830,358 + MPMX19_05296 0.73 +0.2 830,358 + MPMX19_05296 0.73 +0.4 830,358 + MPMX19_05296 0.73 +1.3 830,358 + MPMX19_05296 0.73 -0.1 830,358 + MPMX19_05296 0.73 -0.3 830,358 + MPMX19_05296 0.73 -1.3 830,359 - MPMX19_05296 0.73 -0.3 830,359 - MPMX19_05296 0.73 -1.7 830,359 - MPMX19_05296 0.73 -0.3 830,359 - MPMX19_05296 0.73 -0.0 830,359 - MPMX19_05296 0.73 -0.2 830,359 - MPMX19_05296 0.73 +0.4 830,359 - MPMX19_05296 0.73 +0.9 830,359 - MPMX19_05296 0.73 -0.4 830,589 + -0.6 830,589 + +0.2 830,589 + -0.7 830,589 + +0.1 830,589 + -0.7 830,590 - -1.1 830,642 + +0.1 830,643 - -0.7 830,667 - -0.1 830,667 - -0.7 830,692 - +0.8 830,692 - +0.3 830,692 - -2.4 830,727 + -0.1 830,727 + -0.3 830,728 - -0.1 830,728 - -1.1 830,809 + -0.7 830,809 + -0.3 830,809 + -0.7 830,810 - -0.3 830,810 - -0.5 830,810 - -0.9 830,810 - -0.1 830,810 - -0.7 830,810 - -0.3 830,856 + -0.7 830,856 + -1.0 830,856 + -0.7 830,856 + -2.0 830,856 + -0.9 830,856 + +0.3 830,856 + -0.4 830,856 + +0.1 830,856 + -0.4 830,856 + -0.1 830,857 - -0.6 830,857 - -0.7 830,857 - -0.9 830,857 - -0.7 830,857 - -2.8 830,857 - -1.7 830,857 - +0.1
Or see this region's nucleotide sequence