Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05290 and MPMX19_05291 are separated by 45 nucleotides MPMX19_05291 and MPMX19_05292 overlap by 8 nucleotides MPMX19_05292 and MPMX19_05293 overlap by 4 nucleotides MPMX19_05293 and MPMX19_05294 overlap by 4 nucleotides
MPMX19_05290: MPMX19_05290 - Hydrogenase transcriptional regulatory protein hupR1, at 825,538 to 827,025
_05290
MPMX19_05291: MPMX19_05291 - Hydrogenase maturation factor HybF, at 827,071 to 827,412
_05291
MPMX19_05292: MPMX19_05292 - hypothetical protein, at 827,405 to 828,241
_05292
MPMX19_05293: MPMX19_05293 - hypothetical protein, at 828,238 to 829,122
_05293
MPMX19_05294: MPMX19_05294 - hypothetical protein, at 829,119 to 829,547
_05294
Position (kb) 827
828
829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 826.547 kb on + strand, within MPMX19_05290 at 826.769 kb on + strand, within MPMX19_05290 at 826.769 kb on + strand, within MPMX19_05290 at 826.770 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 827.661 kb on + strand, within MPMX19_05292 at 827.661 kb on + strand, within MPMX19_05292 at 827.661 kb on + strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.700 kb on + strand, within MPMX19_05292 at 828.141 kb on + strand, within MPMX19_05292 at 828.141 kb on + strand, within MPMX19_05292 at 828.141 kb on + strand, within MPMX19_05292 at 828.141 kb on + strand, within MPMX19_05292 at 828.141 kb on + strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.207 kb on + strand at 828.207 kb on + strand at 828.207 kb on + strand at 828.207 kb on + strand at 828.207 kb on + strand at 828.208 kb on - strand at 828.208 kb on - strand at 828.208 kb on - strand at 828.208 kb on - strand at 828.208 kb on - strand at 828.390 kb on - strand, within MPMX19_05293 at 828.390 kb on - strand, within MPMX19_05293 at 828.390 kb on - strand, within MPMX19_05293 at 828.390 kb on - strand, within MPMX19_05293 at 828.390 kb on - strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.393 kb on - strand, within MPMX19_05293 at 828.393 kb on - strand, within MPMX19_05293 at 829.007 kb on + strand, within MPMX19_05293 at 829.007 kb on + strand, within MPMX19_05293 at 829.008 kb on - strand, within MPMX19_05293 at 829.008 kb on - strand, within MPMX19_05293 at 829.037 kb on + strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 826,547 + MPMX19_05290 0.68 -1.0 826,769 + MPMX19_05290 0.83 -0.2 826,769 + MPMX19_05290 0.83 +0.4 826,770 - MPMX19_05290 0.83 +1.1 826,832 - MPMX19_05290 0.87 +0.7 826,832 - MPMX19_05290 0.87 +0.1 826,832 - MPMX19_05290 0.87 -0.3 826,832 - MPMX19_05290 0.87 -0.5 826,832 - MPMX19_05290 0.87 +0.1 826,832 - MPMX19_05290 0.87 +0.2 826,832 - MPMX19_05290 0.87 -0.7 826,832 - MPMX19_05290 0.87 -1.0 827,661 + MPMX19_05292 0.31 +0.2 827,661 + MPMX19_05292 0.31 +0.1 827,661 + MPMX19_05292 0.31 -2.8 827,662 - MPMX19_05292 0.31 +0.2 827,662 - MPMX19_05292 0.31 -1.0 827,662 - MPMX19_05292 0.31 +1.4 827,662 - MPMX19_05292 0.31 -0.7 827,662 - MPMX19_05292 0.31 +0.2 827,662 - MPMX19_05292 0.31 -1.7 827,662 - MPMX19_05292 0.31 +0.7 827,662 - MPMX19_05292 0.31 +1.2 827,700 + MPMX19_05292 0.35 +2.3 828,141 + MPMX19_05292 0.88 -1.7 828,141 + MPMX19_05292 0.88 -0.9 828,141 + MPMX19_05292 0.88 -0.3 828,141 + MPMX19_05292 0.88 +0.3 828,141 + MPMX19_05292 0.88 -0.7 828,142 - MPMX19_05292 0.88 +1.1 828,142 - MPMX19_05292 0.88 +0.5 828,142 - MPMX19_05292 0.88 -2.0 828,142 - MPMX19_05292 0.88 -1.5 828,142 - MPMX19_05292 0.88 -1.4 828,142 - MPMX19_05292 0.88 +0.8 828,142 - MPMX19_05292 0.88 -0.6 828,142 - MPMX19_05292 0.88 -0.0 828,207 + -0.1 828,207 + +0.8 828,207 + -0.7 828,207 + -1.3 828,207 + -0.9 828,208 - +0.3 828,208 - -0.3 828,208 - -1.4 828,208 - -1.1 828,208 - -0.1 828,390 - MPMX19_05293 0.17 +0.7 828,390 - MPMX19_05293 0.17 -0.4 828,390 - MPMX19_05293 0.17 -0.9 828,390 - MPMX19_05293 0.17 -1.2 828,390 - MPMX19_05293 0.17 -0.9 828,392 + MPMX19_05293 0.17 +0.4 828,392 + MPMX19_05293 0.17 +0.4 828,392 + MPMX19_05293 0.17 +0.9 828,392 + MPMX19_05293 0.17 -1.3 828,392 + MPMX19_05293 0.17 +0.7 828,392 + MPMX19_05293 0.17 -0.1 828,392 + MPMX19_05293 0.17 +1.7 828,392 + MPMX19_05293 0.17 -0.0 828,392 + MPMX19_05293 0.17 -0.7 828,393 - MPMX19_05293 0.18 +0.4 828,393 - MPMX19_05293 0.18 -0.7 829,007 + MPMX19_05293 0.87 -0.6 829,007 + MPMX19_05293 0.87 -0.7 829,008 - MPMX19_05293 0.87 -2.0 829,008 - MPMX19_05293 0.87 +1.0 829,037 + -0.1 829,038 - -1.9 829,038 - -0.2 829,038 - -0.8 829,038 - +1.1 829,038 - -0.5 829,038 - +0.1 829,038 - -0.7 829,038 - -0.7 829,174 + MPMX19_05294 0.13 +0.5 829,174 + MPMX19_05294 0.13 -0.5 829,174 + MPMX19_05294 0.13 -0.1 829,174 + MPMX19_05294 0.13 +0.0 829,174 + MPMX19_05294 0.13 -3.5 829,175 - MPMX19_05294 0.13 +2.0 829,175 - MPMX19_05294 0.13 +0.5 829,175 - MPMX19_05294 0.13 -2.0
Or see this region's nucleotide sequence