Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05253 and MPMX19_05254 are separated by 79 nucleotides MPMX19_05254 and MPMX19_05255 are separated by 346 nucleotides
MPMX19_05253: MPMX19_05253 - Carbon monoxide dehydrogenase large chain, at 782,926 to 785,316
_05253
MPMX19_05254: MPMX19_05254 - Carbon monoxide dehydrogenase small chain, at 785,396 to 785,896
_05254
MPMX19_05255: MPMX19_05255 - hypothetical protein, at 786,243 to 787,217
_05255
Position (kb) 785
786 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 784.526 kb on + strand, within MPMX19_05253 at 784.526 kb on + strand, within MPMX19_05253 at 784.527 kb on - strand, within MPMX19_05253 at 784.664 kb on + strand, within MPMX19_05253 at 784.664 kb on + strand, within MPMX19_05253 at 784.664 kb on + strand, within MPMX19_05253 at 784.664 kb on + strand, within MPMX19_05253 at 784.664 kb on + strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.685 kb on + strand, within MPMX19_05253 at 784.685 kb on + strand, within MPMX19_05253 at 784.685 kb on + strand, within MPMX19_05253 at 784.686 kb on - strand, within MPMX19_05253 at 784.686 kb on - strand, within MPMX19_05253 at 784.686 kb on - strand, within MPMX19_05253 at 784.817 kb on + strand, within MPMX19_05253 at 784.817 kb on + strand, within MPMX19_05253 at 784.818 kb on - strand, within MPMX19_05253 at 784.818 kb on - strand, within MPMX19_05253 at 784.818 kb on - strand, within MPMX19_05253 at 784.818 kb on - strand, within MPMX19_05253 at 784.818 kb on - strand, within MPMX19_05253 at 784.907 kb on + strand, within MPMX19_05253 at 784.907 kb on + strand, within MPMX19_05253 at 784.907 kb on + strand, within MPMX19_05253 at 784.908 kb on - strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.989 kb on - strand, within MPMX19_05253 at 784.989 kb on - strand, within MPMX19_05253 at 784.989 kb on - strand, within MPMX19_05253 at 785.016 kb on - strand, within MPMX19_05253 at 785.183 kb on + strand at 785.183 kb on + strand at 785.183 kb on + strand at 785.184 kb on - strand at 785.240 kb on + strand at 785.240 kb on + strand at 785.240 kb on + strand at 785.240 kb on + strand at 785.240 kb on + strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.397 kb on + strand at 785.397 kb on + strand at 785.536 kb on + strand, within MPMX19_05254 at 785.536 kb on + strand, within MPMX19_05254 at 785.536 kb on + strand, within MPMX19_05254 at 785.537 kb on - strand, within MPMX19_05254 at 785.537 kb on - strand, within MPMX19_05254 at 785.936 kb on + strand at 785.937 kb on - strand at 785.937 kb on - strand at 785.937 kb on - strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 786.034 kb on - strand at 786.107 kb on + strand at 786.108 kb on - strand at 786.149 kb on + strand at 786.150 kb on - strand at 786.185 kb on - strand at 786.190 kb on + strand at 786.190 kb on + strand at 786.190 kb on + strand at 786.191 kb on - strand at 786.191 kb on - strand at 786.191 kb on - strand at 786.191 kb on - strand at 786.191 kb on - strand at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.384 kb on + strand, within MPMX19_05255 at 786.384 kb on + strand, within MPMX19_05255 at 786.385 kb on - strand, within MPMX19_05255 at 786.385 kb on - strand, within MPMX19_05255 at 786.414 kb on + strand, within MPMX19_05255 at 786.414 kb on + strand, within MPMX19_05255 at 786.414 kb on + strand, within MPMX19_05255 at 786.414 kb on + strand, within MPMX19_05255 at 786.415 kb on - strand, within MPMX19_05255 at 786.415 kb on - strand, within MPMX19_05255 at 786.415 kb on - strand, within MPMX19_05255 at 786.415 kb on - strand, within MPMX19_05255 at 786.415 kb on - strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.781 kb on - strand, within MPMX19_05255
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 784,526 + MPMX19_05253 0.67 -0.0 784,526 + MPMX19_05253 0.67 -0.5 784,527 - MPMX19_05253 0.67 -1.1 784,664 + MPMX19_05253 0.73 -1.3 784,664 + MPMX19_05253 0.73 +0.5 784,664 + MPMX19_05253 0.73 +0.1 784,664 + MPMX19_05253 0.73 -0.7 784,664 + MPMX19_05253 0.73 -0.5 784,665 - MPMX19_05253 0.73 +0.3 784,665 - MPMX19_05253 0.73 -0.1 784,665 - MPMX19_05253 0.73 -0.1 784,665 - MPMX19_05253 0.73 +0.3 784,665 - MPMX19_05253 0.73 +0.2 784,665 - MPMX19_05253 0.73 -0.1 784,665 - MPMX19_05253 0.73 -1.9 784,685 + MPMX19_05253 0.74 +0.3 784,685 + MPMX19_05253 0.74 -0.8 784,685 + MPMX19_05253 0.74 -1.1 784,686 - MPMX19_05253 0.74 -0.3 784,686 - MPMX19_05253 0.74 +0.5 784,686 - MPMX19_05253 0.74 +0.4 784,817 + MPMX19_05253 0.79 -0.9 784,817 + MPMX19_05253 0.79 -0.3 784,818 - MPMX19_05253 0.79 -2.8 784,818 - MPMX19_05253 0.79 -0.3 784,818 - MPMX19_05253 0.79 -0.5 784,818 - MPMX19_05253 0.79 +0.2 784,818 - MPMX19_05253 0.79 +0.0 784,907 + MPMX19_05253 0.83 -1.3 784,907 + MPMX19_05253 0.83 -0.3 784,907 + MPMX19_05253 0.83 +0.1 784,908 - MPMX19_05253 0.83 -0.0 784,988 + MPMX19_05253 0.86 -0.8 784,988 + MPMX19_05253 0.86 -0.8 784,988 + MPMX19_05253 0.86 +0.3 784,988 + MPMX19_05253 0.86 +0.3 784,988 + MPMX19_05253 0.86 +0.4 784,988 + MPMX19_05253 0.86 +0.4 784,988 + MPMX19_05253 0.86 +2.4 784,988 + MPMX19_05253 0.86 -0.2 784,989 - MPMX19_05253 0.86 +0.1 784,989 - MPMX19_05253 0.86 -0.3 784,989 - MPMX19_05253 0.86 -0.5 785,016 - MPMX19_05253 0.87 -0.8 785,183 + -1.3 785,183 + +2.5 785,183 + -0.5 785,184 - +1.1 785,240 + -0.7 785,240 + -1.0 785,240 + +1.7 785,240 + -0.9 785,240 + +0.3 785,241 - -1.3 785,241 - -0.3 785,241 - +0.7 785,241 - -0.3 785,241 - -0.9 785,241 - +1.1 785,241 - -0.8 785,241 - -1.7 785,241 - -0.8 785,241 - +0.3 785,397 + -1.5 785,397 + -0.9 785,536 + MPMX19_05254 0.28 +0.1 785,536 + MPMX19_05254 0.28 -0.1 785,536 + MPMX19_05254 0.28 -2.0 785,537 - MPMX19_05254 0.28 -1.9 785,537 - MPMX19_05254 0.28 +0.9 785,936 + +0.3 785,937 - +0.5 785,937 - +0.6 785,937 - -1.0 785,956 + -0.1 785,956 + -1.3 785,956 + -1.7 785,956 + -0.5 785,956 + +1.5 785,956 + -0.2 785,956 + -1.8 785,956 + -2.5 785,956 + -0.2 785,956 + +0.6 785,956 + -1.1 785,956 + +0.3 785,956 + -0.7 785,957 - -1.7 785,957 - -2.7 785,957 - -1.7 785,957 - +0.5 785,957 - +0.1 785,957 - -0.7 785,957 - +0.0 785,957 - +0.5 785,957 - -1.5 785,957 - -0.1 785,957 - -0.9 785,957 - -0.2 786,034 - -0.6 786,107 + +0.1 786,108 - -0.3 786,149 + -1.8 786,150 - +0.3 786,185 - -1.0 786,190 + -1.7 786,190 + +1.5 786,190 + -0.6 786,191 - -1.3 786,191 - -0.5 786,191 - -0.7 786,191 - -1.3 786,191 - -0.1 786,381 + MPMX19_05255 0.14 -1.9 786,381 + MPMX19_05255 0.14 +0.1 786,381 + MPMX19_05255 0.14 +0.3 786,381 + MPMX19_05255 0.14 +0.7 786,381 + MPMX19_05255 0.14 +0.7 786,381 + MPMX19_05255 0.14 -0.1 786,381 + MPMX19_05255 0.14 +1.3 786,381 + MPMX19_05255 0.14 +0.3 786,381 + MPMX19_05255 0.14 +0.9 786,382 - MPMX19_05255 0.14 -0.6 786,382 - MPMX19_05255 0.14 -0.3 786,382 - MPMX19_05255 0.14 -1.0 786,382 - MPMX19_05255 0.14 -2.1 786,382 - MPMX19_05255 0.14 +0.3 786,382 - MPMX19_05255 0.14 +0.2 786,382 - MPMX19_05255 0.14 -0.5 786,384 + MPMX19_05255 0.14 +0.5 786,384 + MPMX19_05255 0.14 +0.1 786,385 - MPMX19_05255 0.15 +0.2 786,385 - MPMX19_05255 0.15 -2.1 786,414 + MPMX19_05255 0.18 -0.9 786,414 + MPMX19_05255 0.18 -0.6 786,414 + MPMX19_05255 0.18 +0.1 786,414 + MPMX19_05255 0.18 +0.8 786,415 - MPMX19_05255 0.18 +0.7 786,415 - MPMX19_05255 0.18 -2.0 786,415 - MPMX19_05255 0.18 -1.3 786,415 - MPMX19_05255 0.18 +0.5 786,415 - MPMX19_05255 0.18 -2.8 786,609 + MPMX19_05255 0.38 -0.9 786,609 + MPMX19_05255 0.38 -1.1 786,609 + MPMX19_05255 0.38 -0.7 786,609 + MPMX19_05255 0.38 +0.3 786,609 + MPMX19_05255 0.38 -1.1 786,609 + MPMX19_05255 0.38 +1.3 786,609 + MPMX19_05255 0.38 +0.7 786,609 + MPMX19_05255 0.38 -2.0 786,609 + MPMX19_05255 0.38 +0.2 786,610 - MPMX19_05255 0.38 +1.3 786,610 - MPMX19_05255 0.38 -0.7 786,610 - MPMX19_05255 0.38 -0.9 786,610 - MPMX19_05255 0.38 +0.4 786,610 - MPMX19_05255 0.38 +1.0 786,610 - MPMX19_05255 0.38 +0.3 786,610 - MPMX19_05255 0.38 -0.6 786,610 - MPMX19_05255 0.38 +0.1 786,610 - MPMX19_05255 0.38 -0.2 786,618 + MPMX19_05255 0.38 -0.9 786,618 + MPMX19_05255 0.38 -0.1 786,618 + MPMX19_05255 0.38 -1.8 786,618 + MPMX19_05255 0.38 -0.7 786,618 + MPMX19_05255 0.38 +0.3 786,618 + MPMX19_05255 0.38 +0.1 786,618 + MPMX19_05255 0.38 -0.3 786,618 + MPMX19_05255 0.38 -1.2 786,618 + MPMX19_05255 0.38 -0.7 786,618 + MPMX19_05255 0.38 -0.1 786,618 + MPMX19_05255 0.38 -0.4 786,618 + MPMX19_05255 0.38 +2.7 786,618 + MPMX19_05255 0.38 -0.9 786,618 + MPMX19_05255 0.38 +0.1 786,618 + MPMX19_05255 0.38 -1.5 786,618 + MPMX19_05255 0.38 -1.5 786,618 + MPMX19_05255 0.38 -0.4 786,619 - MPMX19_05255 0.39 -0.7 786,619 - MPMX19_05255 0.39 +0.3 786,619 - MPMX19_05255 0.39 -0.3 786,619 - MPMX19_05255 0.39 -1.9 786,619 - MPMX19_05255 0.39 -0.4 786,619 - MPMX19_05255 0.39 +0.2 786,619 - MPMX19_05255 0.39 +0.4 786,619 - MPMX19_05255 0.39 -0.9 786,619 - MPMX19_05255 0.39 +0.7 786,619 - MPMX19_05255 0.39 +0.3 786,619 - MPMX19_05255 0.39 -1.4 786,619 - MPMX19_05255 0.39 -2.1 786,756 + MPMX19_05255 0.53 -0.9 786,756 + MPMX19_05255 0.53 -0.9 786,756 + MPMX19_05255 0.53 -0.9 786,756 + MPMX19_05255 0.53 +0.3 786,756 + MPMX19_05255 0.53 -1.1 786,756 + MPMX19_05255 0.53 -0.7 786,756 + MPMX19_05255 0.53 -0.2 786,756 + MPMX19_05255 0.53 +1.0 786,756 + MPMX19_05255 0.53 -0.3 786,757 - MPMX19_05255 0.53 -0.3 786,757 - MPMX19_05255 0.53 -1.3 786,757 - MPMX19_05255 0.53 +0.9 786,757 - MPMX19_05255 0.53 -0.2 786,757 - MPMX19_05255 0.53 +0.4 786,757 - MPMX19_05255 0.53 -0.3 786,757 - MPMX19_05255 0.53 -0.7 786,781 - MPMX19_05255 0.55 +2.3
Or see this region's nucleotide sequence