Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05223

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05222 and MPMX19_05223 are separated by 36 nucleotidesMPMX19_05223 and MPMX19_05224 are separated by 268 nucleotidesMPMX19_05224 and MPMX19_05225 are separated by 172 nucleotides MPMX19_05222: MPMX19_05222 - Flagellar hook protein FlgE, at 747,892 to 749,202 _05222 MPMX19_05223: MPMX19_05223 - Basal-body rod modification protein FlgD, at 749,239 to 749,934 _05223 MPMX19_05224: MPMX19_05224 - hypothetical protein, at 750,203 to 750,712 _05224 MPMX19_05225: MPMX19_05225 - Fatty acid oxidation complex subunit alpha, at 750,885 to 753,008 _05225 Position (kb) 749 750Strain fitness (log2 ratio) -2 -1 0 1 2at 748.256 kb on + strand, within MPMX19_05222at 748.313 kb on + strand, within MPMX19_05222at 748.313 kb on + strand, within MPMX19_05222at 748.313 kb on + strand, within MPMX19_05222at 748.313 kb on + strand, within MPMX19_05222at 748.313 kb on + strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222at 748.314 kb on - strand, within MPMX19_05222at 748.823 kb on + strand, within MPMX19_05222at 748.824 kb on - strand, within MPMX19_05222at 748.824 kb on - strand, within MPMX19_05222at 748.824 kb on - strand, within MPMX19_05222at 748.824 kb on - strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.829 kb on + strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.830 kb on - strand, within MPMX19_05222at 748.832 kb on + strand, within MPMX19_05222at 748.832 kb on + strand, within MPMX19_05222at 748.832 kb on + strand, within MPMX19_05222at 748.832 kb on + strand, within MPMX19_05222at 748.832 kb on + strand, within MPMX19_05222at 748.832 kb on + strand, within MPMX19_05222at 748.832 kb on + strand, within MPMX19_05222at 748.832 kb on + strand, within MPMX19_05222at 748.833 kb on - strand, within MPMX19_05222at 748.833 kb on - strand, within MPMX19_05222at 748.833 kb on - strand, within MPMX19_05222at 748.833 kb on - strand, within MPMX19_05222at 748.833 kb on - strand, within MPMX19_05222at 748.833 kb on - strand, within MPMX19_05222at 748.833 kb on - strand, within MPMX19_05222at 748.833 kb on - strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.895 kb on + strand, within MPMX19_05222at 748.896 kb on - strand, within MPMX19_05222at 748.896 kb on - strand, within MPMX19_05222at 748.896 kb on - strand, within MPMX19_05222at 748.896 kb on - strand, within MPMX19_05222at 748.896 kb on - strand, within MPMX19_05222at 748.896 kb on - strand, within MPMX19_05222at 748.896 kb on - strand, within MPMX19_05222at 748.896 kb on - strand, within MPMX19_05222at 748.896 kb on - strand, within MPMX19_05222at 748.896 kb on - strand, within MPMX19_05222at 749.066 kb on + strand, within MPMX19_05222at 749.066 kb on + strand, within MPMX19_05222at 749.066 kb on + strand, within MPMX19_05222at 749.066 kb on + strand, within MPMX19_05222at 749.066 kb on + strand, within MPMX19_05222at 749.066 kb on + strand, within MPMX19_05222at 749.066 kb on + strand, within MPMX19_05222at 749.066 kb on + strand, within MPMX19_05222at 749.067 kb on - strand, within MPMX19_05222at 749.067 kb on - strand, within MPMX19_05222at 749.067 kb on - strand, within MPMX19_05222at 749.067 kb on - strand, within MPMX19_05222at 749.067 kb on - strand, within MPMX19_05222at 749.067 kb on - strand, within MPMX19_05222at 749.067 kb on - strand, within MPMX19_05222at 749.180 kb on + strandat 749.180 kb on + strandat 749.180 kb on + strandat 749.180 kb on + strandat 749.180 kb on + strandat 749.180 kb on + strandat 749.180 kb on + strandat 749.180 kb on + strandat 749.181 kb on - strandat 749.181 kb on - strandat 749.181 kb on - strandat 749.181 kb on - strandat 749.181 kb on - strandat 749.181 kb on - strandat 749.181 kb on - strandat 749.181 kb on - strandat 749.181 kb on - strandat 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.399 kb on + strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.400 kb on - strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.414 kb on + strand, within MPMX19_05223at 749.415 kb on - strand, within MPMX19_05223at 749.415 kb on - strand, within MPMX19_05223at 749.415 kb on - strand, within MPMX19_05223at 749.415 kb on - strand, within MPMX19_05223at 749.415 kb on - strand, within MPMX19_05223at 749.492 kb on + strand, within MPMX19_05223at 749.492 kb on + strand, within MPMX19_05223at 749.492 kb on + strand, within MPMX19_05223at 749.492 kb on + strand, within MPMX19_05223at 749.493 kb on - strand, within MPMX19_05223at 749.493 kb on - strand, within MPMX19_05223at 749.493 kb on - strand, within MPMX19_05223at 749.558 kb on + strand, within MPMX19_05223at 749.558 kb on + strand, within MPMX19_05223at 749.558 kb on + strand, within MPMX19_05223at 749.559 kb on - strand, within MPMX19_05223at 749.559 kb on - strand, within MPMX19_05223at 749.559 kb on - strand, within MPMX19_05223at 749.559 kb on - strand, within MPMX19_05223at 749.619 kb on + strand, within MPMX19_05223at 749.619 kb on + strand, within MPMX19_05223at 749.619 kb on + strand, within MPMX19_05223at 749.619 kb on + strand, within MPMX19_05223at 749.620 kb on - strand, within MPMX19_05223at 749.620 kb on - strand, within MPMX19_05223at 749.624 kb on + strand, within MPMX19_05223at 749.625 kb on - strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.627 kb on + strand, within MPMX19_05223at 749.628 kb on - strand, within MPMX19_05223at 749.628 kb on - strand, within MPMX19_05223at 749.628 kb on - strand, within MPMX19_05223at 749.628 kb on - strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.843 kb on + strand, within MPMX19_05223at 749.844 kb on - strand, within MPMX19_05223at 749.844 kb on - strand, within MPMX19_05223at 750.113 kb on + strandat 750.113 kb on + strandat 750.113 kb on + strandat 750.114 kb on - strandat 750.114 kb on - strandat 750.114 kb on - strandat 750.114 kb on - strandat 750.114 kb on - strandat 750.114 kb on - strandat 750.345 kb on + strand, within MPMX19_05224at 750.345 kb on + strand, within MPMX19_05224at 750.490 kb on - strand, within MPMX19_05224at 750.490 kb on - strand, within MPMX19_05224

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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748,256 + MPMX19_05222 0.28 -0.7
748,313 + MPMX19_05222 0.32 +0.9
748,313 + MPMX19_05222 0.32 +0.8
748,313 + MPMX19_05222 0.32 -0.6
748,313 + MPMX19_05222 0.32 -1.4
748,313 + MPMX19_05222 0.32 -1.5
748,314 - MPMX19_05222 0.32 +1.1
748,314 - MPMX19_05222 0.32 -0.3
748,314 - MPMX19_05222 0.32 -2.4
748,314 - MPMX19_05222 0.32 -0.9
748,314 - MPMX19_05222 0.32 -0.6
748,314 - MPMX19_05222 0.32 -0.6
748,823 + MPMX19_05222 0.71 +0.4
748,824 - MPMX19_05222 0.71 -0.6
748,824 - MPMX19_05222 0.71 +0.2
748,824 - MPMX19_05222 0.71 +0.3
748,824 - MPMX19_05222 0.71 +0.7
748,829 + MPMX19_05222 0.71 +0.3
748,829 + MPMX19_05222 0.71 -1.9
748,829 + MPMX19_05222 0.71 +0.5
748,829 + MPMX19_05222 0.71 -0.7
748,829 + MPMX19_05222 0.71 -0.2
748,829 + MPMX19_05222 0.71 +0.2
748,829 + MPMX19_05222 0.71 +0.4
748,829 + MPMX19_05222 0.71 -0.9
748,829 + MPMX19_05222 0.71 -0.7
748,829 + MPMX19_05222 0.71 -2.0
748,829 + MPMX19_05222 0.71 -0.0
748,829 + MPMX19_05222 0.71 +1.1
748,829 + MPMX19_05222 0.71 +0.3
748,829 + MPMX19_05222 0.71 -1.1
748,829 + MPMX19_05222 0.71 -0.5
748,830 - MPMX19_05222 0.72 -0.4
748,830 - MPMX19_05222 0.72 +0.7
748,830 - MPMX19_05222 0.72 +0.1
748,830 - MPMX19_05222 0.72 +0.6
748,830 - MPMX19_05222 0.72 -0.7
748,830 - MPMX19_05222 0.72 +1.5
748,830 - MPMX19_05222 0.72 -0.2
748,830 - MPMX19_05222 0.72 -1.5
748,830 - MPMX19_05222 0.72 -0.1
748,830 - MPMX19_05222 0.72 +0.1
748,830 - MPMX19_05222 0.72 +0.0
748,830 - MPMX19_05222 0.72 -1.1
748,830 - MPMX19_05222 0.72 -0.9
748,830 - MPMX19_05222 0.72 -0.6
748,830 - MPMX19_05222 0.72 -0.1
748,830 - MPMX19_05222 0.72 -0.7
748,830 - MPMX19_05222 0.72 +0.3
748,830 - MPMX19_05222 0.72 -1.2
748,830 - MPMX19_05222 0.72 +1.7
748,830 - MPMX19_05222 0.72 -0.1
748,830 - MPMX19_05222 0.72 +0.7
748,830 - MPMX19_05222 0.72 -0.0
748,830 - MPMX19_05222 0.72 -0.7
748,832 + MPMX19_05222 0.72 -0.6
748,832 + MPMX19_05222 0.72 -0.9
748,832 + MPMX19_05222 0.72 -0.0
748,832 + MPMX19_05222 0.72 +0.9
748,832 + MPMX19_05222 0.72 +0.2
748,832 + MPMX19_05222 0.72 -1.2
748,832 + MPMX19_05222 0.72 -0.8
748,832 + MPMX19_05222 0.72 +0.0
748,833 - MPMX19_05222 0.72 -0.7
748,833 - MPMX19_05222 0.72 -0.3
748,833 - MPMX19_05222 0.72 +0.6
748,833 - MPMX19_05222 0.72 -1.4
748,833 - MPMX19_05222 0.72 -0.4
748,833 - MPMX19_05222 0.72 -0.4
748,833 - MPMX19_05222 0.72 -0.1
748,833 - MPMX19_05222 0.72 -0.1
748,895 + MPMX19_05222 0.77 -0.1
748,895 + MPMX19_05222 0.77 -0.2
748,895 + MPMX19_05222 0.77 +0.1
748,895 + MPMX19_05222 0.77 -0.2
748,895 + MPMX19_05222 0.77 -1.0
748,895 + MPMX19_05222 0.77 -0.5
748,895 + MPMX19_05222 0.77 -0.3
748,895 + MPMX19_05222 0.77 +0.6
748,895 + MPMX19_05222 0.77 -0.3
748,895 + MPMX19_05222 0.77 +0.3
748,895 + MPMX19_05222 0.77 +0.4
748,895 + MPMX19_05222 0.77 -0.3
748,895 + MPMX19_05222 0.77 +1.1
748,895 + MPMX19_05222 0.77 -0.1
748,895 + MPMX19_05222 0.77 -1.1
748,895 + MPMX19_05222 0.77 +0.9
748,895 + MPMX19_05222 0.77 -2.4
748,895 + MPMX19_05222 0.77 -0.3
748,896 - MPMX19_05222 0.77 -0.8
748,896 - MPMX19_05222 0.77 +0.7
748,896 - MPMX19_05222 0.77 -0.9
748,896 - MPMX19_05222 0.77 -0.9
748,896 - MPMX19_05222 0.77 -1.5
748,896 - MPMX19_05222 0.77 -0.9
748,896 - MPMX19_05222 0.77 +0.9
748,896 - MPMX19_05222 0.77 -0.2
748,896 - MPMX19_05222 0.77 -0.1
748,896 - MPMX19_05222 0.77 -1.3
749,066 + MPMX19_05222 0.90 -1.6
749,066 + MPMX19_05222 0.90 -1.5
749,066 + MPMX19_05222 0.90 +0.8
749,066 + MPMX19_05222 0.90 -1.4
749,066 + MPMX19_05222 0.90 -0.5
749,066 + MPMX19_05222 0.90 -1.0
749,066 + MPMX19_05222 0.90 -0.1
749,066 + MPMX19_05222 0.90 -0.8
749,067 - MPMX19_05222 0.90 -0.2
749,067 - MPMX19_05222 0.90 +1.4
749,067 - MPMX19_05222 0.90 -0.7
749,067 - MPMX19_05222 0.90 -1.8
749,067 - MPMX19_05222 0.90 -0.1
749,067 - MPMX19_05222 0.90 -1.8
749,067 - MPMX19_05222 0.90 +0.4
749,180 + -0.2
749,180 + -0.8
749,180 + -0.6
749,180 + +1.0
749,180 + -1.5
749,180 + -0.4
749,180 + -0.9
749,180 + -2.2
749,181 - -0.7
749,181 - -0.6
749,181 - -1.3
749,181 - -1.3
749,181 - -0.3
749,181 - -0.4
749,181 - -0.4
749,181 - -2.6
749,181 - -0.3
749,399 + MPMX19_05223 0.23 -0.5
749,399 + MPMX19_05223 0.23 +0.2
749,399 + MPMX19_05223 0.23 +0.4
749,399 + MPMX19_05223 0.23 -0.8
749,399 + MPMX19_05223 0.23 +0.8
749,399 + MPMX19_05223 0.23 +2.2
749,399 + MPMX19_05223 0.23 -0.1
749,399 + MPMX19_05223 0.23 -0.5
749,399 + MPMX19_05223 0.23 -0.7
749,399 + MPMX19_05223 0.23 -1.9
749,399 + MPMX19_05223 0.23 -0.4
749,399 + MPMX19_05223 0.23 -1.2
749,399 + MPMX19_05223 0.23 +0.3
749,400 - MPMX19_05223 0.23 -0.1
749,400 - MPMX19_05223 0.23 -1.3
749,400 - MPMX19_05223 0.23 -0.8
749,400 - MPMX19_05223 0.23 +0.1
749,400 - MPMX19_05223 0.23 +0.7
749,400 - MPMX19_05223 0.23 -0.6
749,400 - MPMX19_05223 0.23 +0.1
749,400 - MPMX19_05223 0.23 -0.7
749,400 - MPMX19_05223 0.23 +0.8
749,414 + MPMX19_05223 0.25 +1.0
749,414 + MPMX19_05223 0.25 -0.7
749,414 + MPMX19_05223 0.25 +0.3
749,414 + MPMX19_05223 0.25 -0.8
749,414 + MPMX19_05223 0.25 -0.1
749,414 + MPMX19_05223 0.25 -0.5
749,414 + MPMX19_05223 0.25 -0.8
749,414 + MPMX19_05223 0.25 -0.6
749,415 - MPMX19_05223 0.25 +0.5
749,415 - MPMX19_05223 0.25 +0.4
749,415 - MPMX19_05223 0.25 +0.2
749,415 - MPMX19_05223 0.25 -0.7
749,415 - MPMX19_05223 0.25 -1.0
749,492 + MPMX19_05223 0.36 +0.3
749,492 + MPMX19_05223 0.36 -0.4
749,492 + MPMX19_05223 0.36 -1.2
749,492 + MPMX19_05223 0.36 -1.1
749,493 - MPMX19_05223 0.36 -0.9
749,493 - MPMX19_05223 0.36 -2.1
749,493 - MPMX19_05223 0.36 -0.1
749,558 + MPMX19_05223 0.46 -1.4
749,558 + MPMX19_05223 0.46 -0.1
749,558 + MPMX19_05223 0.46 +1.0
749,559 - MPMX19_05223 0.46 +0.3
749,559 - MPMX19_05223 0.46 -1.6
749,559 - MPMX19_05223 0.46 -1.1
749,559 - MPMX19_05223 0.46 -0.1
749,619 + MPMX19_05223 0.55 +0.5
749,619 + MPMX19_05223 0.55 +0.1
749,619 + MPMX19_05223 0.55 -0.9
749,619 + MPMX19_05223 0.55 +0.3
749,620 - MPMX19_05223 0.55 +0.3
749,620 - MPMX19_05223 0.55 -1.8
749,624 + MPMX19_05223 0.55 +1.7
749,625 - MPMX19_05223 0.55 -1.3
749,627 + MPMX19_05223 0.56 -0.0
749,627 + MPMX19_05223 0.56 -0.3
749,627 + MPMX19_05223 0.56 -0.8
749,627 + MPMX19_05223 0.56 +1.0
749,627 + MPMX19_05223 0.56 -0.9
749,627 + MPMX19_05223 0.56 +1.1
749,627 + MPMX19_05223 0.56 +0.4
749,627 + MPMX19_05223 0.56 +0.2
749,628 - MPMX19_05223 0.56 -1.4
749,628 - MPMX19_05223 0.56 -0.7
749,628 - MPMX19_05223 0.56 -0.1
749,628 - MPMX19_05223 0.56 -0.4
749,843 + MPMX19_05223 0.87 +0.8
749,843 + MPMX19_05223 0.87 -0.8
749,843 + MPMX19_05223 0.87 -1.1
749,843 + MPMX19_05223 0.87 -0.7
749,843 + MPMX19_05223 0.87 +0.6
749,843 + MPMX19_05223 0.87 -1.8
749,843 + MPMX19_05223 0.87 -0.9
749,843 + MPMX19_05223 0.87 +1.1
749,844 - MPMX19_05223 0.87 -1.7
749,844 - MPMX19_05223 0.87 -0.5
750,113 + -0.9
750,113 + -0.4
750,113 + -0.1
750,114 - +0.4
750,114 - +0.2
750,114 - +0.1
750,114 - -1.1
750,114 - -1.1
750,114 - -0.7
750,345 + MPMX19_05224 0.28 -0.1
750,345 + MPMX19_05224 0.28 -1.4
750,490 - MPMX19_05224 0.56 -0.6
750,490 - MPMX19_05224 0.56 +0.1

Or see this region's nucleotide sequence