Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05206 and MPMX19_05207 are separated by 142 nucleotides MPMX19_05207 and MPMX19_05208 are separated by 108 nucleotides
MPMX19_05206: MPMX19_05206 - Toxin RTX-I translocation ATP-binding protein, at 710,867 to 713,029
_05206
MPMX19_05207: MPMX19_05207 - Hemolysin secretion protein D, plasmid, at 713,172 to 714,488
_05207
MPMX19_05208: MPMX19_05208 - hypothetical protein, at 714,597 to 734,141
_05208
Position (kb) 713
714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.661 kb on + strand, within MPMX19_05206 at 712.662 kb on - strand, within MPMX19_05206 at 712.968 kb on - strand at 712.968 kb on - strand at 713.793 kb on + strand, within MPMX19_05207 at 713.794 kb on - strand, within MPMX19_05207 at 713.794 kb on - strand, within MPMX19_05207 at 713.794 kb on - strand, within MPMX19_05207 at 714.435 kb on + strand at 714.435 kb on + strand at 714.435 kb on + strand at 714.435 kb on + strand at 714.436 kb on - strand at 714.436 kb on - strand at 714.500 kb on + strand at 714.514 kb on + strand at 714.514 kb on + strand at 714.514 kb on + strand at 714.514 kb on + strand at 714.514 kb on + strand at 714.514 kb on + strand at 714.515 kb on - strand at 714.515 kb on - strand at 714.515 kb on - strand at 714.515 kb on - strand at 715.038 kb on + strand at 715.039 kb on - strand at 715.039 kb on - strand at 715.039 kb on - strand at 715.050 kb on + strand at 715.050 kb on + strand at 715.218 kb on + strand at 715.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 712,433 + MPMX19_05206 0.72 +0.7 712,433 + MPMX19_05206 0.72 -1.1 712,433 + MPMX19_05206 0.72 -1.3 712,433 + MPMX19_05206 0.72 -0.7 712,433 + MPMX19_05206 0.72 +0.3 712,433 + MPMX19_05206 0.72 +0.7 712,433 + MPMX19_05206 0.72 +0.3 712,433 + MPMX19_05206 0.72 -1.5 712,433 + MPMX19_05206 0.72 -1.0 712,433 + MPMX19_05206 0.72 +0.5 712,433 + MPMX19_05206 0.72 -0.2 712,433 + MPMX19_05206 0.72 -0.9 712,433 + MPMX19_05206 0.72 +0.3 712,433 + MPMX19_05206 0.72 -1.1 712,433 + MPMX19_05206 0.72 +0.1 712,433 + MPMX19_05206 0.72 +0.3 712,433 + MPMX19_05206 0.72 +0.3 712,433 + MPMX19_05206 0.72 -0.2 712,433 + MPMX19_05206 0.72 +0.5 712,433 + MPMX19_05206 0.72 -0.1 712,433 + MPMX19_05206 0.72 -0.4 712,434 - MPMX19_05206 0.72 +0.9 712,434 - MPMX19_05206 0.72 +0.7 712,434 - MPMX19_05206 0.72 -0.1 712,434 - MPMX19_05206 0.72 -0.7 712,434 - MPMX19_05206 0.72 -0.3 712,434 - MPMX19_05206 0.72 -0.8 712,434 - MPMX19_05206 0.72 -0.1 712,434 - MPMX19_05206 0.72 -0.0 712,434 - MPMX19_05206 0.72 -0.5 712,434 - MPMX19_05206 0.72 -0.6 712,434 - MPMX19_05206 0.72 -0.9 712,434 - MPMX19_05206 0.72 -0.4 712,434 - MPMX19_05206 0.72 -1.7 712,434 - MPMX19_05206 0.72 -0.7 712,434 - MPMX19_05206 0.72 +0.1 712,434 - MPMX19_05206 0.72 -1.9 712,434 - MPMX19_05206 0.72 +1.4 712,434 - MPMX19_05206 0.72 -0.7 712,434 - MPMX19_05206 0.72 -1.3 712,661 + MPMX19_05206 0.83 +0.7 712,662 - MPMX19_05206 0.83 -0.3 712,968 - +0.3 712,968 - +0.1 713,793 + MPMX19_05207 0.47 -1.1 713,794 - MPMX19_05207 0.47 -0.3 713,794 - MPMX19_05207 0.47 -0.1 713,794 - MPMX19_05207 0.47 -1.9 714,435 + -1.1 714,435 + -1.9 714,435 + +0.1 714,435 + -0.7 714,436 - -1.2 714,436 - +0.5 714,500 + -0.9 714,514 + +0.3 714,514 + -1.7 714,514 + -2.2 714,514 + -0.4 714,514 + +0.3 714,514 + -3.0 714,515 - -0.3 714,515 - -0.3 714,515 - -1.8 714,515 - +0.0 715,038 + -1.9 715,039 - -1.3 715,039 - -0.9 715,039 - +0.1 715,050 + -1.5 715,050 + -1.9 715,218 + -0.7 715,219 - -1.0
Or see this region's nucleotide sequence