Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05189 and MPMX19_05190 are separated by 49 nucleotides MPMX19_05190 and MPMX19_05191 are separated by 27 nucleotides
MPMX19_05189: MPMX19_05189 - hypothetical protein, at 692,408 to 693,460
_05189
MPMX19_05190: MPMX19_05190 - putative malonic semialdehyde reductase RutE, at 693,510 to 694,142
_05190
MPMX19_05191: MPMX19_05191 - Phenylacetate-coenzyme A ligase, at 694,170 to 695,504
_05191
Position (kb) 693
694
695 Strain fitness (log2 ratio) -2
-1
0
1 at 692.557 kb on - strand, within MPMX19_05189 at 692.557 kb on - strand, within MPMX19_05189 at 692.905 kb on - strand, within MPMX19_05189 at 692.970 kb on + strand, within MPMX19_05189 at 692.970 kb on + strand, within MPMX19_05189 at 692.971 kb on - strand, within MPMX19_05189 at 693.709 kb on + strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.988 kb on + strand, within MPMX19_05190 at 693.988 kb on + strand, within MPMX19_05190 at 693.989 kb on - strand, within MPMX19_05190 at 694.127 kb on + strand at 694.128 kb on - strand at 694.128 kb on - strand at 694.686 kb on - strand, within MPMX19_05191 at 694.686 kb on - strand, within MPMX19_05191 at 694.686 kb on - strand, within MPMX19_05191 at 694.762 kb on + strand, within MPMX19_05191 at 694.762 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.772 kb on + strand, within MPMX19_05191 at 695.084 kb on - strand, within MPMX19_05191
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 692,557 - MPMX19_05189 0.14 -0.3 692,557 - MPMX19_05189 0.14 -0.2 692,905 - MPMX19_05189 0.47 -0.2 692,970 + MPMX19_05189 0.53 -1.0 692,970 + MPMX19_05189 0.53 -1.5 692,971 - MPMX19_05189 0.53 -0.6 693,709 + MPMX19_05190 0.31 +0.9 693,791 - MPMX19_05190 0.44 -0.7 693,791 - MPMX19_05190 0.44 +0.9 693,791 - MPMX19_05190 0.44 +0.3 693,791 - MPMX19_05190 0.44 -1.5 693,835 + MPMX19_05190 0.51 +0.2 693,835 + MPMX19_05190 0.51 +1.0 693,835 + MPMX19_05190 0.51 +0.5 693,835 + MPMX19_05190 0.51 -1.7 693,835 + MPMX19_05190 0.51 -0.5 693,835 + MPMX19_05190 0.51 -0.0 693,835 + MPMX19_05190 0.51 +0.3 693,835 + MPMX19_05190 0.51 -0.6 693,988 + MPMX19_05190 0.76 +0.7 693,988 + MPMX19_05190 0.76 +0.1 693,989 - MPMX19_05190 0.76 +0.7 694,127 + -1.4 694,128 - -1.5 694,128 - -2.0 694,686 - MPMX19_05191 0.39 -1.6 694,686 - MPMX19_05191 0.39 -0.3 694,686 - MPMX19_05191 0.39 -0.6 694,762 + MPMX19_05191 0.44 +0.1 694,762 + MPMX19_05191 0.44 -0.4 694,765 + MPMX19_05191 0.45 -1.6 694,765 + MPMX19_05191 0.45 +0.3 694,765 + MPMX19_05191 0.45 -0.3 694,771 + MPMX19_05191 0.45 -0.5 694,771 + MPMX19_05191 0.45 +0.6 694,771 + MPMX19_05191 0.45 +0.2 694,772 + MPMX19_05191 0.45 +0.2 695,084 - MPMX19_05191 0.68 +0.7
Or see this region's nucleotide sequence