Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05186 and MPMX19_05187 are separated by 15 nucleotides MPMX19_05187 and MPMX19_05188 are separated by 12 nucleotides MPMX19_05188 and MPMX19_05189 overlap by 7 nucleotides
MPMX19_05186: MPMX19_05186 - Thiosulfate sulfurtransferase GlpE, at 689,322 to 690,953
_05186
MPMX19_05187: MPMX19_05187 - 3-mercaptopropionate dioxygenase, at 690,969 to 691,607
_05187
MPMX19_05188: MPMX19_05188 - Aliphatic sulfonates import ATP-binding protein SsuB, at 691,620 to 692,414
_05188
MPMX19_05189: MPMX19_05189 - hypothetical protein, at 692,408 to 693,460
_05189
Position (kb) 691
692
693 Strain fitness (log2 ratio) -2
-1
0
1 at 690.677 kb on - strand, within MPMX19_05186 at 690.716 kb on - strand, within MPMX19_05186 at 690.716 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.772 kb on + strand, within MPMX19_05186 at 690.772 kb on + strand, within MPMX19_05186 at 690.773 kb on - strand, within MPMX19_05186 at 690.773 kb on - strand, within MPMX19_05186 at 690.835 kb on + strand at 690.835 kb on + strand at 690.836 kb on - strand at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.258 kb on + strand, within MPMX19_05187 at 691.258 kb on + strand, within MPMX19_05187 at 691.258 kb on + strand, within MPMX19_05187 at 691.259 kb on - strand, within MPMX19_05187 at 691.376 kb on - strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.984 kb on + strand, within MPMX19_05188 at 691.984 kb on + strand, within MPMX19_05188 at 691.984 kb on + strand, within MPMX19_05188 at 691.985 kb on - strand, within MPMX19_05188 at 692.110 kb on + strand, within MPMX19_05188 at 692.110 kb on + strand, within MPMX19_05188 at 692.111 kb on - strand, within MPMX19_05188 at 692.410 kb on - strand at 692.557 kb on - strand, within MPMX19_05189 at 692.557 kb on - strand, within MPMX19_05189 at 692.905 kb on - strand, within MPMX19_05189 at 692.970 kb on + strand, within MPMX19_05189 at 692.970 kb on + strand, within MPMX19_05189 at 692.971 kb on - strand, within MPMX19_05189
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 690,677 - MPMX19_05186 0.83 -0.3 690,716 - MPMX19_05186 0.85 +0.4 690,716 - MPMX19_05186 0.85 +0.1 690,734 - MPMX19_05186 0.87 -1.3 690,734 - MPMX19_05186 0.87 +0.9 690,734 - MPMX19_05186 0.87 +0.3 690,734 - MPMX19_05186 0.87 -0.8 690,734 - MPMX19_05186 0.87 -0.9 690,734 - MPMX19_05186 0.87 -1.5 690,772 + MPMX19_05186 0.89 -1.2 690,772 + MPMX19_05186 0.89 +1.7 690,773 - MPMX19_05186 0.89 -0.4 690,773 - MPMX19_05186 0.89 -0.5 690,835 + -1.1 690,835 + -0.3 690,836 - -1.4 691,108 + MPMX19_05187 0.22 +0.5 691,108 + MPMX19_05187 0.22 +1.1 691,108 + MPMX19_05187 0.22 -0.6 691,108 + MPMX19_05187 0.22 -0.3 691,108 + MPMX19_05187 0.22 +0.1 691,108 + MPMX19_05187 0.22 +0.7 691,108 + MPMX19_05187 0.22 -1.9 691,108 + MPMX19_05187 0.22 -0.3 691,109 - MPMX19_05187 0.22 -0.5 691,109 - MPMX19_05187 0.22 -1.5 691,109 - MPMX19_05187 0.22 -1.1 691,109 - MPMX19_05187 0.22 +0.1 691,109 - MPMX19_05187 0.22 +1.1 691,109 - MPMX19_05187 0.22 -1.5 691,109 - MPMX19_05187 0.22 +0.5 691,109 - MPMX19_05187 0.22 +0.3 691,109 - MPMX19_05187 0.22 -1.5 691,258 + MPMX19_05187 0.45 -1.4 691,258 + MPMX19_05187 0.45 +0.5 691,258 + MPMX19_05187 0.45 +1.7 691,259 - MPMX19_05187 0.45 +0.3 691,376 - MPMX19_05187 0.64 -0.0 691,429 + MPMX19_05187 0.72 +0.2 691,429 + MPMX19_05187 0.72 -0.4 691,429 + MPMX19_05187 0.72 -0.3 691,429 + MPMX19_05187 0.72 +0.4 691,429 + MPMX19_05187 0.72 -1.3 691,429 + MPMX19_05187 0.72 +0.3 691,429 + MPMX19_05187 0.72 +0.3 691,429 + MPMX19_05187 0.72 -1.0 691,984 + MPMX19_05188 0.46 +0.4 691,984 + MPMX19_05188 0.46 -0.2 691,984 + MPMX19_05188 0.46 -0.9 691,985 - MPMX19_05188 0.46 +0.4 692,110 + MPMX19_05188 0.62 +0.7 692,110 + MPMX19_05188 0.62 +1.1 692,111 - MPMX19_05188 0.62 -2.2 692,410 - -1.0 692,557 - MPMX19_05189 0.14 -0.3 692,557 - MPMX19_05189 0.14 -0.2 692,905 - MPMX19_05189 0.47 -0.2 692,970 + MPMX19_05189 0.53 -1.0 692,970 + MPMX19_05189 0.53 -1.5 692,971 - MPMX19_05189 0.53 -0.6
Or see this region's nucleotide sequence