Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05159 and MPMX19_05160 are separated by 63 nucleotides MPMX19_05160 and MPMX19_05161 are separated by 317 nucleotides
MPMX19_05159: MPMX19_05159 - hypothetical protein, at 658,543 to 660,822
_05159
MPMX19_05160: MPMX19_05160 - hypothetical protein, at 660,886 to 661,077
_05160
MPMX19_05161: MPMX19_05161 - hypothetical protein, at 661,395 to 661,529
_05161
Position (kb) 660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.963 kb on + strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.964 kb on - strand, within MPMX19_05159 at 659.997 kb on + strand, within MPMX19_05159 at 659.997 kb on + strand, within MPMX19_05159 at 659.997 kb on + strand, within MPMX19_05159 at 659.997 kb on + strand, within MPMX19_05159 at 659.997 kb on + strand, within MPMX19_05159 at 659.998 kb on - strand, within MPMX19_05159 at 659.998 kb on - strand, within MPMX19_05159 at 659.998 kb on - strand, within MPMX19_05159 at 659.999 kb on + strand, within MPMX19_05159 at 659.999 kb on + strand, within MPMX19_05159 at 659.999 kb on + strand, within MPMX19_05159 at 659.999 kb on + strand, within MPMX19_05159 at 659.999 kb on + strand, within MPMX19_05159 at 659.999 kb on + strand, within MPMX19_05159 at 659.999 kb on + strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.000 kb on - strand, within MPMX19_05159 at 660.023 kb on + strand, within MPMX19_05159 at 660.023 kb on + strand, within MPMX19_05159 at 660.024 kb on - strand, within MPMX19_05159 at 660.345 kb on + strand, within MPMX19_05159 at 660.345 kb on + strand, within MPMX19_05159 at 660.353 kb on + strand, within MPMX19_05159 at 660.353 kb on + strand, within MPMX19_05159 at 660.353 kb on + strand, within MPMX19_05159 at 660.353 kb on + strand, within MPMX19_05159 at 660.354 kb on - strand, within MPMX19_05159 at 660.354 kb on - strand, within MPMX19_05159 at 660.354 kb on - strand, within MPMX19_05159 at 660.354 kb on - strand, within MPMX19_05159 at 660.420 kb on - strand, within MPMX19_05159 at 660.434 kb on + strand, within MPMX19_05159 at 660.434 kb on + strand, within MPMX19_05159 at 660.434 kb on + strand, within MPMX19_05159 at 660.434 kb on + strand, within MPMX19_05159 at 660.435 kb on - strand, within MPMX19_05159 at 660.435 kb on - strand, within MPMX19_05159 at 660.435 kb on - strand, within MPMX19_05159 at 660.435 kb on - strand, within MPMX19_05159 at 660.464 kb on + strand, within MPMX19_05159 at 660.465 kb on - strand, within MPMX19_05159 at 660.617 kb on + strand at 660.618 kb on - strand at 660.690 kb on - strand at 660.788 kb on - strand at 660.788 kb on - strand at 660.788 kb on - strand at 660.796 kb on + strand at 660.796 kb on + strand at 660.797 kb on - strand at 660.797 kb on - strand at 660.797 kb on - strand at 660.797 kb on - strand at 660.864 kb on + strand at 660.865 kb on - strand at 660.904 kb on + strand at 660.904 kb on + strand at 660.904 kb on + strand at 660.905 kb on - strand at 660.905 kb on - strand at 660.905 kb on - strand at 660.905 kb on - strand at 660.941 kb on + strand, within MPMX19_05160 at 660.941 kb on + strand, within MPMX19_05160 at 660.941 kb on + strand, within MPMX19_05160 at 660.941 kb on + strand, within MPMX19_05160 at 660.941 kb on + strand, within MPMX19_05160 at 660.941 kb on + strand, within MPMX19_05160 at 660.941 kb on + strand, within MPMX19_05160 at 660.941 kb on + strand, within MPMX19_05160 at 660.941 kb on + strand, within MPMX19_05160 at 660.941 kb on + strand, within MPMX19_05160 at 660.941 kb on + strand, within MPMX19_05160 at 660.941 kb on + strand, within MPMX19_05160 at 660.942 kb on - strand, within MPMX19_05160 at 660.942 kb on - strand, within MPMX19_05160 at 660.942 kb on - strand, within MPMX19_05160 at 660.942 kb on - strand, within MPMX19_05160 at 660.942 kb on - strand, within MPMX19_05160 at 660.942 kb on - strand, within MPMX19_05160 at 660.942 kb on - strand, within MPMX19_05160 at 660.946 kb on + strand, within MPMX19_05160 at 660.947 kb on - strand, within MPMX19_05160 at 660.947 kb on - strand, within MPMX19_05160 at 660.947 kb on - strand, within MPMX19_05160 at 661.052 kb on + strand, within MPMX19_05160 at 661.052 kb on + strand, within MPMX19_05160 at 661.052 kb on + strand, within MPMX19_05160 at 661.052 kb on + strand, within MPMX19_05160 at 661.052 kb on + strand, within MPMX19_05160 at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.157 kb on + strand at 661.157 kb on + strand at 661.157 kb on + strand at 661.157 kb on + strand at 661.158 kb on - strand at 661.158 kb on - strand at 661.158 kb on - strand at 661.278 kb on - strand at 661.278 kb on - strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.396 kb on + strand at 661.548 kb on + strand at 661.666 kb on + strand at 661.666 kb on + strand at 661.667 kb on - strand at 661.667 kb on - strand at 661.701 kb on + strand at 661.703 kb on + strand at 661.708 kb on + strand at 661.710 kb on + strand at 661.710 kb on + strand at 661.769 kb on + strand at 661.824 kb on + strand at 661.825 kb on - strand at 661.928 kb on + strand at 661.928 kb on + strand at 661.928 kb on + strand at 661.936 kb on + strand at 661.937 kb on - strand at 661.937 kb on - strand at 661.937 kb on - strand at 662.050 kb on + strand at 662.050 kb on + strand at 662.050 kb on + strand at 662.050 kb on + strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 659,963 + MPMX19_05159 0.62 -0.0 659,963 + MPMX19_05159 0.62 -1.4 659,963 + MPMX19_05159 0.62 -0.9 659,963 + MPMX19_05159 0.62 -0.0 659,963 + MPMX19_05159 0.62 +1.0 659,963 + MPMX19_05159 0.62 +0.1 659,963 + MPMX19_05159 0.62 -1.3 659,963 + MPMX19_05159 0.62 +0.4 659,963 + MPMX19_05159 0.62 -1.6 659,963 + MPMX19_05159 0.62 +0.6 659,963 + MPMX19_05159 0.62 -0.2 659,963 + MPMX19_05159 0.62 -0.3 659,963 + MPMX19_05159 0.62 -1.0 659,964 - MPMX19_05159 0.62 -2.0 659,964 - MPMX19_05159 0.62 -0.3 659,964 - MPMX19_05159 0.62 -0.2 659,964 - MPMX19_05159 0.62 +0.3 659,964 - MPMX19_05159 0.62 +0.1 659,964 - MPMX19_05159 0.62 +1.3 659,964 - MPMX19_05159 0.62 -0.6 659,964 - MPMX19_05159 0.62 -1.9 659,964 - MPMX19_05159 0.62 +0.3 659,964 - MPMX19_05159 0.62 -0.9 659,964 - MPMX19_05159 0.62 +0.8 659,964 - MPMX19_05159 0.62 -1.5 659,964 - MPMX19_05159 0.62 -0.4 659,964 - MPMX19_05159 0.62 -1.1 659,997 + MPMX19_05159 0.64 +1.9 659,997 + MPMX19_05159 0.64 +1.0 659,997 + MPMX19_05159 0.64 +1.0 659,997 + MPMX19_05159 0.64 -2.2 659,997 + MPMX19_05159 0.64 -0.6 659,998 - MPMX19_05159 0.64 -0.1 659,998 - MPMX19_05159 0.64 -0.0 659,998 - MPMX19_05159 0.64 -1.3 659,999 + MPMX19_05159 0.64 +0.4 659,999 + MPMX19_05159 0.64 +0.5 659,999 + MPMX19_05159 0.64 -0.7 659,999 + MPMX19_05159 0.64 -0.9 659,999 + MPMX19_05159 0.64 +0.7 659,999 + MPMX19_05159 0.64 -1.8 659,999 + MPMX19_05159 0.64 -0.4 660,000 - MPMX19_05159 0.64 -1.3 660,000 - MPMX19_05159 0.64 -0.4 660,000 - MPMX19_05159 0.64 -2.2 660,000 - MPMX19_05159 0.64 +0.2 660,000 - MPMX19_05159 0.64 +0.4 660,000 - MPMX19_05159 0.64 +0.8 660,000 - MPMX19_05159 0.64 +0.1 660,000 - MPMX19_05159 0.64 -0.3 660,000 - MPMX19_05159 0.64 +1.7 660,000 - MPMX19_05159 0.64 +1.2 660,000 - MPMX19_05159 0.64 -0.2 660,000 - MPMX19_05159 0.64 +0.4 660,000 - MPMX19_05159 0.64 -0.4 660,000 - MPMX19_05159 0.64 -2.6 660,023 + MPMX19_05159 0.65 -0.2 660,023 + MPMX19_05159 0.65 -0.4 660,024 - MPMX19_05159 0.65 -0.4 660,345 + MPMX19_05159 0.79 -1.4 660,345 + MPMX19_05159 0.79 +0.9 660,353 + MPMX19_05159 0.79 +0.6 660,353 + MPMX19_05159 0.79 -0.3 660,353 + MPMX19_05159 0.79 -1.6 660,353 + MPMX19_05159 0.79 -1.1 660,354 - MPMX19_05159 0.79 -1.9 660,354 - MPMX19_05159 0.79 -1.1 660,354 - MPMX19_05159 0.79 -0.6 660,354 - MPMX19_05159 0.79 -1.6 660,420 - MPMX19_05159 0.82 -1.9 660,434 + MPMX19_05159 0.83 +0.1 660,434 + MPMX19_05159 0.83 -1.8 660,434 + MPMX19_05159 0.83 -0.3 660,434 + MPMX19_05159 0.83 +0.3 660,435 - MPMX19_05159 0.83 +0.9 660,435 - MPMX19_05159 0.83 -1.6 660,435 - MPMX19_05159 0.83 -0.7 660,435 - MPMX19_05159 0.83 -0.8 660,464 + MPMX19_05159 0.84 -0.5 660,465 - MPMX19_05159 0.84 +0.8 660,617 + -0.5 660,618 - -0.5 660,690 - -0.6 660,788 - -1.5 660,788 - -1.1 660,788 - -0.2 660,796 + -0.2 660,796 + -1.1 660,797 - +0.3 660,797 - -1.2 660,797 - -1.3 660,797 - -1.4 660,864 + -0.7 660,865 - -1.3 660,904 + -0.2 660,904 + -0.7 660,904 + -0.0 660,905 - +0.3 660,905 - -1.8 660,905 - +0.2 660,905 - -1.8 660,941 + MPMX19_05160 0.29 -0.8 660,941 + MPMX19_05160 0.29 -0.6 660,941 + MPMX19_05160 0.29 -1.1 660,941 + MPMX19_05160 0.29 -1.5 660,941 + MPMX19_05160 0.29 -1.0 660,941 + MPMX19_05160 0.29 -0.3 660,941 + MPMX19_05160 0.29 -1.1 660,941 + MPMX19_05160 0.29 -0.3 660,941 + MPMX19_05160 0.29 -1.0 660,941 + MPMX19_05160 0.29 -0.6 660,941 + MPMX19_05160 0.29 -1.1 660,941 + MPMX19_05160 0.29 -1.1 660,942 - MPMX19_05160 0.29 +0.2 660,942 - MPMX19_05160 0.29 -0.5 660,942 - MPMX19_05160 0.29 -0.3 660,942 - MPMX19_05160 0.29 +0.7 660,942 - MPMX19_05160 0.29 -0.6 660,942 - MPMX19_05160 0.29 -0.3 660,942 - MPMX19_05160 0.29 -1.1 660,946 + MPMX19_05160 0.31 -0.9 660,947 - MPMX19_05160 0.32 +1.1 660,947 - MPMX19_05160 0.32 -1.2 660,947 - MPMX19_05160 0.32 +0.8 661,052 + MPMX19_05160 0.86 -0.2 661,052 + MPMX19_05160 0.86 +1.7 661,052 + MPMX19_05160 0.86 -0.8 661,052 + MPMX19_05160 0.86 -0.7 661,052 + MPMX19_05160 0.86 -0.8 661,153 + +0.1 661,153 + -1.3 661,153 + +0.9 661,153 + -1.1 661,153 + +0.0 661,153 + -0.9 661,153 + +0.8 661,153 + +0.1 661,153 + -2.0 661,153 + -0.5 661,153 + -1.8 661,153 + -0.3 661,153 + +0.8 661,153 + -1.5 661,153 + -0.1 661,153 + +0.8 661,153 + -1.9 661,153 + +0.4 661,153 + -0.3 661,153 + -0.9 661,153 + -0.6 661,153 + -0.0 661,153 + -0.2 661,153 + +0.3 661,153 + -0.9 661,153 + -0.0 661,154 - +0.3 661,154 - -1.8 661,154 - +0.4 661,154 - +0.4 661,154 - -1.0 661,154 - -0.5 661,154 - -1.3 661,154 - -1.0 661,154 - -0.2 661,157 + +0.1 661,157 + -0.4 661,157 + -1.6 661,157 + -1.5 661,158 - -0.7 661,158 - -0.9 661,158 - +1.7 661,278 - +0.3 661,278 - -0.9 661,321 + -0.6 661,321 + -2.2 661,321 + +0.0 661,321 + -2.2 661,321 + -1.5 661,321 + +1.1 661,321 + +1.3 661,321 + -0.9 661,321 + -0.3 661,321 + +1.1 661,321 + -0.0 661,322 - -1.6 661,322 - -1.5 661,322 - +0.7 661,322 - +0.4 661,322 - +0.6 661,322 - +0.1 661,322 - -1.1 661,322 - -0.2 661,322 - +0.4 661,322 - -1.4 661,322 - -1.3 661,322 - +0.4 661,322 - +0.0 661,322 - +1.7 661,322 - -2.2 661,322 - +1.3 661,396 + -0.3 661,548 + -1.4 661,666 + -0.3 661,666 + -0.7 661,667 - -0.6 661,667 - -0.1 661,701 + -1.9 661,703 + -0.9 661,708 + +0.1 661,710 + -1.1 661,710 + +2.7 661,769 + +1.0 661,824 + -0.5 661,825 - -1.1 661,928 + +0.8 661,928 + -1.5 661,928 + -0.2 661,936 + -0.6 661,937 - -0.3 661,937 - -1.6 661,937 - +0.5 662,050 + +0.2 662,050 + -0.1 662,050 + -1.9 662,050 + -0.8 662,051 - +1.0 662,051 - -1.2 662,051 - -3.4 662,051 - -0.8 662,051 - +0.4 662,051 - +0.1 662,051 - -0.4
Or see this region's nucleotide sequence