Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05153

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05151 and MPMX19_05152 are separated by 29 nucleotidesMPMX19_05152 and MPMX19_05153 are separated by 32 nucleotidesMPMX19_05153 and MPMX19_05154 are separated by 84 nucleotides MPMX19_05151: MPMX19_05151 - 2-aminoethylphosphonate--pyruvate transaminase, at 648,246 to 649,364 _05151 MPMX19_05152: MPMX19_05152 - Phosphonoacetaldehyde hydrolase, at 649,394 to 650,224 _05152 MPMX19_05153: MPMX19_05153 - 4-methylaminobutanoate oxidase (formaldehyde-forming), at 650,257 to 651,483 _05153 MPMX19_05154: MPMX19_05154 - Isoleucine 2-epimerase, at 651,568 to 652,875 _05154 Position (kb) 650 651 652Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 649.406 kb on + strandat 649.407 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.848 kb on - strand, within MPMX19_05152at 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.538 kb on + strand, within MPMX19_05153at 650.538 kb on + strand, within MPMX19_05153at 650.539 kb on - strand, within MPMX19_05153at 650.539 kb on - strand, within MPMX19_05153at 650.935 kb on + strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.229 kb on + strand, within MPMX19_05153at 651.229 kb on + strand, within MPMX19_05153at 651.229 kb on + strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 652.114 kb on + strand, within MPMX19_05154at 652.114 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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649,406 + -0.3
649,407 - +0.5
649,419 - -0.3
649,419 - -0.1
649,419 - -1.4
649,419 - -0.6
649,673 + MPMX19_05152 0.34 -1.5
649,673 + MPMX19_05152 0.34 -1.3
649,673 + MPMX19_05152 0.34 -0.8
649,673 + MPMX19_05152 0.34 -1.0
649,673 + MPMX19_05152 0.34 -1.8
649,673 + MPMX19_05152 0.34 +1.1
649,674 - MPMX19_05152 0.34 +1.5
649,674 - MPMX19_05152 0.34 -0.3
649,674 - MPMX19_05152 0.34 +1.3
649,848 - MPMX19_05152 0.55 -0.0
650,144 + +0.3
650,144 + -0.6
650,144 + +0.2
650,144 + +0.5
650,144 + -2.1
650,145 - -0.0
650,145 - +0.6
650,145 - -0.9
650,145 - -0.9
650,145 - +0.9
650,145 - +0.5
650,145 - -1.1
650,145 - +0.3
650,467 + MPMX19_05153 0.17 +0.1
650,467 + MPMX19_05153 0.17 -2.7
650,467 + MPMX19_05153 0.17 -1.2
650,467 + MPMX19_05153 0.17 +1.0
650,467 + MPMX19_05153 0.17 -0.8
650,467 + MPMX19_05153 0.17 -0.8
650,467 + MPMX19_05153 0.17 -0.9
650,467 + MPMX19_05153 0.17 +0.7
650,467 + MPMX19_05153 0.17 +0.4
650,467 + MPMX19_05153 0.17 -1.3
650,467 + MPMX19_05153 0.17 +0.5
650,467 + MPMX19_05153 0.17 -2.5
650,468 - MPMX19_05153 0.17 -0.1
650,468 - MPMX19_05153 0.17 +1.9
650,468 - MPMX19_05153 0.17 -2.0
650,468 - MPMX19_05153 0.17 +0.4
650,468 - MPMX19_05153 0.17 -1.1
650,468 - MPMX19_05153 0.17 -1.1
650,468 - MPMX19_05153 0.17 -0.5
650,468 - MPMX19_05153 0.17 +1.1
650,468 - MPMX19_05153 0.17 -0.1
650,468 - MPMX19_05153 0.17 -0.4
650,538 + MPMX19_05153 0.23 -1.4
650,538 + MPMX19_05153 0.23 -0.9
650,539 - MPMX19_05153 0.23 +0.1
650,539 - MPMX19_05153 0.23 +2.3
650,935 + MPMX19_05153 0.55 +0.4
650,936 - MPMX19_05153 0.55 -2.2
650,936 - MPMX19_05153 0.55 -0.7
650,936 - MPMX19_05153 0.55 -0.0
651,010 + MPMX19_05153 0.61 -0.2
651,010 + MPMX19_05153 0.61 +0.3
651,010 + MPMX19_05153 0.61 -1.2
651,010 + MPMX19_05153 0.61 -1.9
651,208 + MPMX19_05153 0.78 +0.4
651,208 + MPMX19_05153 0.78 -1.2
651,208 + MPMX19_05153 0.78 +0.1
651,208 + MPMX19_05153 0.78 +1.0
651,208 + MPMX19_05153 0.78 -0.5
651,208 + MPMX19_05153 0.78 -0.3
651,208 + MPMX19_05153 0.78 -0.1
651,208 + MPMX19_05153 0.78 +0.0
651,208 + MPMX19_05153 0.78 +0.3
651,208 + MPMX19_05153 0.78 +0.6
651,209 - MPMX19_05153 0.78 -0.3
651,209 - MPMX19_05153 0.78 -1.2
651,209 - MPMX19_05153 0.78 +0.4
651,209 - MPMX19_05153 0.78 -0.8
651,209 - MPMX19_05153 0.78 +0.7
651,209 - MPMX19_05153 0.78 -0.8
651,209 - MPMX19_05153 0.78 -1.0
651,209 - MPMX19_05153 0.78 +0.1
651,209 - MPMX19_05153 0.78 -2.5
651,209 - MPMX19_05153 0.78 +1.0
651,209 - MPMX19_05153 0.78 -0.3
651,209 - MPMX19_05153 0.78 -1.8
651,229 + MPMX19_05153 0.79 -0.5
651,229 + MPMX19_05153 0.79 -0.5
651,229 + MPMX19_05153 0.79 -0.1
651,230 - MPMX19_05153 0.79 +0.8
651,230 - MPMX19_05153 0.79 -2.8
651,230 - MPMX19_05153 0.79 +0.9
651,230 - MPMX19_05153 0.79 +1.0
651,230 - MPMX19_05153 0.79 -0.1
651,230 - MPMX19_05153 0.79 -0.4
652,114 + MPMX19_05154 0.42 +0.8
652,114 + MPMX19_05154 0.42 -0.2
652,189 + MPMX19_05154 0.47 -0.1
652,189 + MPMX19_05154 0.47 +0.7
652,189 + MPMX19_05154 0.47 -1.2
652,189 + MPMX19_05154 0.47 +1.1
652,189 + MPMX19_05154 0.47 -1.3
652,189 + MPMX19_05154 0.47 +0.5
652,189 + MPMX19_05154 0.47 -0.5
652,189 + MPMX19_05154 0.47 +0.8
652,190 - MPMX19_05154 0.48 -1.1
652,190 - MPMX19_05154 0.48 +0.1
652,190 - MPMX19_05154 0.48 -0.7
652,190 - MPMX19_05154 0.48 -0.3
652,190 - MPMX19_05154 0.48 +0.2
652,190 - MPMX19_05154 0.48 +0.1
652,190 - MPMX19_05154 0.48 +1.7
652,190 - MPMX19_05154 0.48 +1.7
652,252 + MPMX19_05154 0.52 -1.1
652,252 + MPMX19_05154 0.52 +0.1
652,252 + MPMX19_05154 0.52 +0.7
652,252 + MPMX19_05154 0.52 +0.2
652,252 + MPMX19_05154 0.52 +0.7
652,252 + MPMX19_05154 0.52 +1.0
652,252 + MPMX19_05154 0.52 -1.1
652,252 + MPMX19_05154 0.52 -0.6
652,252 + MPMX19_05154 0.52 -0.3
652,252 + MPMX19_05154 0.52 +0.7
652,252 + MPMX19_05154 0.52 -1.0
652,253 - MPMX19_05154 0.52 -0.4
652,253 - MPMX19_05154 0.52 -0.1
652,253 - MPMX19_05154 0.52 +0.1
652,253 - MPMX19_05154 0.52 -0.8
652,253 - MPMX19_05154 0.52 +0.4
652,253 - MPMX19_05154 0.52 -1.9
652,253 - MPMX19_05154 0.52 -0.6

Or see this region's nucleotide sequence