Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05106

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05104 and MPMX19_05105 are separated by 93 nucleotidesMPMX19_05105 and MPMX19_05106 overlap by 4 nucleotidesMPMX19_05106 and MPMX19_05107 overlap by 4 nucleotides MPMX19_05104: MPMX19_05104 - hypothetical protein, at 591,594 to 592,145 _05104 MPMX19_05105: MPMX19_05105 - Glycine betaine uptake system permease protein YehW, at 592,239 to 592,997 _05105 MPMX19_05106: MPMX19_05106 - Glycine betaine uptake system ATP-binding protein YehX, at 592,994 to 593,953 _05106 MPMX19_05107: MPMX19_05107 - Glycine betaine uptake system permease protein YehY, at 593,950 to 595,134 _05107 Position (kb) 592 593 594Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.604 kb on - strand, within MPMX19_05105at 592.815 kb on - strand, within MPMX19_05105at 592.815 kb on - strand, within MPMX19_05105at 592.815 kb on - strand, within MPMX19_05105at 592.853 kb on - strand, within MPMX19_05105at 592.853 kb on - strand, within MPMX19_05105at 592.853 kb on - strand, within MPMX19_05105at 593.559 kb on + strand, within MPMX19_05106at 593.559 kb on + strand, within MPMX19_05106at 593.560 kb on - strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.719 kb on - strand, within MPMX19_05106at 593.719 kb on - strand, within MPMX19_05106at 593.719 kb on - strand, within MPMX19_05106at 593.719 kb on - strand, within MPMX19_05106at 593.719 kb on - strand, within MPMX19_05106at 594.319 kb on + strand, within MPMX19_05107at 594.319 kb on + strand, within MPMX19_05107at 594.319 kb on + strand, within MPMX19_05107at 594.320 kb on - strand, within MPMX19_05107at 594.335 kb on + strand, within MPMX19_05107at 594.335 kb on + strand, within MPMX19_05107at 594.335 kb on + strand, within MPMX19_05107at 594.335 kb on + strand, within MPMX19_05107at 594.336 kb on - strand, within MPMX19_05107at 594.336 kb on - strand, within MPMX19_05107at 594.623 kb on + strand, within MPMX19_05107at 594.623 kb on + strand, within MPMX19_05107at 594.624 kb on - strand, within MPMX19_05107at 594.708 kb on + strand, within MPMX19_05107at 594.709 kb on - strand, within MPMX19_05107at 594.709 kb on - strand, within MPMX19_05107at 594.946 kb on + strand, within MPMX19_05107at 594.946 kb on + strand, within MPMX19_05107at 594.946 kb on + strand, within MPMX19_05107at 594.946 kb on + strand, within MPMX19_05107at 594.947 kb on - strand, within MPMX19_05107at 594.947 kb on - strand, within MPMX19_05107

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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592,179 + -1.0
592,179 + -2.6
592,179 + +0.6
592,179 + -0.2
592,179 + -0.3
592,179 + -0.9
592,180 - -0.3
592,180 - +0.6
592,180 - -1.3
592,180 - -1.1
592,180 - +0.0
592,180 - -1.1
592,339 + MPMX19_05105 0.13 -0.4
592,339 + MPMX19_05105 0.13 -0.6
592,339 + MPMX19_05105 0.13 +0.6
592,339 + MPMX19_05105 0.13 -0.4
592,339 + MPMX19_05105 0.13 +1.4
592,339 + MPMX19_05105 0.13 +0.1
592,339 + MPMX19_05105 0.13 -3.1
592,339 + MPMX19_05105 0.13 -0.9
592,339 + MPMX19_05105 0.13 +0.0
592,339 + MPMX19_05105 0.13 +0.1
592,339 + MPMX19_05105 0.13 -1.9
592,339 + MPMX19_05105 0.13 -0.6
592,339 + MPMX19_05105 0.13 -1.5
592,339 + MPMX19_05105 0.13 -0.6
592,339 + MPMX19_05105 0.13 -0.7
592,339 + MPMX19_05105 0.13 -0.0
592,340 - MPMX19_05105 0.13 -0.7
592,340 - MPMX19_05105 0.13 +1.9
592,340 - MPMX19_05105 0.13 -1.4
592,340 - MPMX19_05105 0.13 -0.4
592,340 - MPMX19_05105 0.13 +0.4
592,340 - MPMX19_05105 0.13 -0.4
592,340 - MPMX19_05105 0.13 -1.3
592,340 - MPMX19_05105 0.13 -0.3
592,340 - MPMX19_05105 0.13 -0.9
592,340 - MPMX19_05105 0.13 -0.3
592,340 - MPMX19_05105 0.13 -0.3
592,340 - MPMX19_05105 0.13 -0.6
592,340 - MPMX19_05105 0.13 +0.7
592,340 - MPMX19_05105 0.13 +0.3
592,340 - MPMX19_05105 0.13 -1.6
592,340 - MPMX19_05105 0.13 +1.2
592,340 - MPMX19_05105 0.13 -0.6
592,340 - MPMX19_05105 0.13 +0.9
592,340 - MPMX19_05105 0.13 +0.2
592,340 - MPMX19_05105 0.13 -2.9
592,340 - MPMX19_05105 0.13 +1.1
592,340 - MPMX19_05105 0.13 +0.0
592,340 - MPMX19_05105 0.13 -0.3
592,340 - MPMX19_05105 0.13 +0.7
592,340 - MPMX19_05105 0.13 -1.0
592,340 - MPMX19_05105 0.13 +1.0
592,340 - MPMX19_05105 0.13 -1.0
592,340 - MPMX19_05105 0.13 +0.4
592,340 - MPMX19_05105 0.13 -1.3
592,340 - MPMX19_05105 0.13 +0.1
592,604 - MPMX19_05105 0.48 +0.1
592,815 - MPMX19_05105 0.76 +0.5
592,815 - MPMX19_05105 0.76 -0.2
592,815 - MPMX19_05105 0.76 -0.1
592,853 - MPMX19_05105 0.81 -1.4
592,853 - MPMX19_05105 0.81 +0.2
592,853 - MPMX19_05105 0.81 -1.4
593,559 + MPMX19_05106 0.59 +0.4
593,559 + MPMX19_05106 0.59 -2.4
593,560 - MPMX19_05106 0.59 +0.6
593,718 + MPMX19_05106 0.75 +0.5
593,718 + MPMX19_05106 0.75 +0.5
593,718 + MPMX19_05106 0.75 +0.4
593,718 + MPMX19_05106 0.75 +1.1
593,718 + MPMX19_05106 0.75 +0.4
593,718 + MPMX19_05106 0.75 -0.3
593,719 - MPMX19_05106 0.76 +0.1
593,719 - MPMX19_05106 0.76 +0.5
593,719 - MPMX19_05106 0.76 -0.5
593,719 - MPMX19_05106 0.76 +0.6
593,719 - MPMX19_05106 0.76 +0.1
594,319 + MPMX19_05107 0.31 -0.0
594,319 + MPMX19_05107 0.31 +0.8
594,319 + MPMX19_05107 0.31 -2.0
594,320 - MPMX19_05107 0.31 -1.7
594,335 + MPMX19_05107 0.32 +0.9
594,335 + MPMX19_05107 0.32 -0.7
594,335 + MPMX19_05107 0.32 -0.2
594,335 + MPMX19_05107 0.32 +0.7
594,336 - MPMX19_05107 0.33 -0.9
594,336 - MPMX19_05107 0.33 +0.1
594,623 + MPMX19_05107 0.57 -1.1
594,623 + MPMX19_05107 0.57 -0.6
594,624 - MPMX19_05107 0.57 -0.6
594,708 + MPMX19_05107 0.64 +1.1
594,709 - MPMX19_05107 0.64 -2.2
594,709 - MPMX19_05107 0.64 -1.5
594,946 + MPMX19_05107 0.84 +0.8
594,946 + MPMX19_05107 0.84 +1.5
594,946 + MPMX19_05107 0.84 +0.1
594,946 + MPMX19_05107 0.84 -0.4
594,947 - MPMX19_05107 0.84 -1.9
594,947 - MPMX19_05107 0.84 +1.1

Or see this region's nucleotide sequence