Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05104

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05102 and MPMX19_05103 are separated by 20 nucleotidesMPMX19_05103 and MPMX19_05104 are separated by 19 nucleotidesMPMX19_05104 and MPMX19_05105 are separated by 93 nucleotidesMPMX19_05105 and MPMX19_05106 overlap by 4 nucleotides MPMX19_05102: MPMX19_05102 - Intermembrane transport protein PqiB, at 589,251 to 590,954 _05102 MPMX19_05103: MPMX19_05103 - Intermembrane transport lipoprotein PqiC, at 590,975 to 591,574 _05103 MPMX19_05104: MPMX19_05104 - hypothetical protein, at 591,594 to 592,145 _05104 MPMX19_05105: MPMX19_05105 - Glycine betaine uptake system permease protein YehW, at 592,239 to 592,997 _05105 MPMX19_05106: MPMX19_05106 - Glycine betaine uptake system ATP-binding protein YehX, at 592,994 to 593,953 _05106 Position (kb) 591 592 593Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 590.910 kb on + strandat 590.910 kb on + strandat 590.911 kb on - strandat 590.911 kb on - strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.953 kb on - strandat 590.953 kb on - strandat 591.065 kb on + strand, within MPMX19_05103at 591.065 kb on + strand, within MPMX19_05103at 591.065 kb on + strand, within MPMX19_05103at 591.066 kb on - strand, within MPMX19_05103at 591.066 kb on - strand, within MPMX19_05103at 591.066 kb on - strand, within MPMX19_05103at 591.066 kb on - strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.218 kb on + strand, within MPMX19_05103at 591.219 kb on - strand, within MPMX19_05103at 591.219 kb on - strand, within MPMX19_05103at 591.219 kb on - strand, within MPMX19_05103at 591.219 kb on - strand, within MPMX19_05103at 591.219 kb on - strand, within MPMX19_05103at 591.572 kb on + strandat 591.572 kb on + strandat 591.573 kb on - strandat 591.584 kb on + strandat 591.584 kb on + strandat 591.585 kb on - strandat 591.683 kb on + strand, within MPMX19_05104at 591.683 kb on + strand, within MPMX19_05104at 591.683 kb on + strand, within MPMX19_05104at 591.683 kb on + strand, within MPMX19_05104at 591.683 kb on + strand, within MPMX19_05104at 591.684 kb on - strand, within MPMX19_05104at 591.684 kb on - strand, within MPMX19_05104at 591.684 kb on - strand, within MPMX19_05104at 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.179 kb on + strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.180 kb on - strandat 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.339 kb on + strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.340 kb on - strand, within MPMX19_05105at 592.604 kb on - strand, within MPMX19_05105at 592.815 kb on - strand, within MPMX19_05105at 592.815 kb on - strand, within MPMX19_05105at 592.815 kb on - strand, within MPMX19_05105at 592.853 kb on - strand, within MPMX19_05105at 592.853 kb on - strand, within MPMX19_05105at 592.853 kb on - strand, within MPMX19_05105

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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590,910 + -1.4
590,910 + -0.6
590,911 - -0.6
590,911 - -2.7
590,952 + -0.5
590,952 + +1.2
590,952 + -1.9
590,952 + +0.9
590,952 + +0.4
590,952 + +1.5
590,953 - -0.5
590,953 - -1.5
591,065 + MPMX19_05103 0.15 -0.6
591,065 + MPMX19_05103 0.15 -0.3
591,065 + MPMX19_05103 0.15 -2.8
591,066 - MPMX19_05103 0.15 -0.4
591,066 - MPMX19_05103 0.15 -1.9
591,066 - MPMX19_05103 0.15 +0.1
591,066 - MPMX19_05103 0.15 -0.1
591,218 + MPMX19_05103 0.41 -1.1
591,218 + MPMX19_05103 0.41 -1.0
591,218 + MPMX19_05103 0.41 -0.7
591,218 + MPMX19_05103 0.41 -0.2
591,218 + MPMX19_05103 0.41 -0.6
591,218 + MPMX19_05103 0.41 -1.0
591,218 + MPMX19_05103 0.41 -1.1
591,219 - MPMX19_05103 0.41 -1.9
591,219 - MPMX19_05103 0.41 +1.0
591,219 - MPMX19_05103 0.41 -0.6
591,219 - MPMX19_05103 0.41 -0.5
591,219 - MPMX19_05103 0.41 -0.3
591,572 + +0.3
591,572 + +0.5
591,573 - +1.0
591,584 + +1.2
591,584 + -1.0
591,585 - -0.9
591,683 + MPMX19_05104 0.16 -0.4
591,683 + MPMX19_05104 0.16 +0.7
591,683 + MPMX19_05104 0.16 +1.0
591,683 + MPMX19_05104 0.16 -0.7
591,683 + MPMX19_05104 0.16 +0.3
591,684 - MPMX19_05104 0.16 -0.4
591,684 - MPMX19_05104 0.16 +0.1
591,684 - MPMX19_05104 0.16 +0.3
592,179 + -1.0
592,179 + -2.6
592,179 + +0.6
592,179 + -0.2
592,179 + -0.3
592,179 + -0.9
592,180 - -0.3
592,180 - +0.6
592,180 - -1.3
592,180 - -1.1
592,180 - +0.0
592,180 - -1.1
592,339 + MPMX19_05105 0.13 -0.4
592,339 + MPMX19_05105 0.13 -0.6
592,339 + MPMX19_05105 0.13 +0.6
592,339 + MPMX19_05105 0.13 -0.4
592,339 + MPMX19_05105 0.13 +1.4
592,339 + MPMX19_05105 0.13 +0.1
592,339 + MPMX19_05105 0.13 -3.1
592,339 + MPMX19_05105 0.13 -0.9
592,339 + MPMX19_05105 0.13 +0.0
592,339 + MPMX19_05105 0.13 +0.1
592,339 + MPMX19_05105 0.13 -1.9
592,339 + MPMX19_05105 0.13 -0.6
592,339 + MPMX19_05105 0.13 -1.5
592,339 + MPMX19_05105 0.13 -0.6
592,339 + MPMX19_05105 0.13 -0.7
592,339 + MPMX19_05105 0.13 -0.0
592,340 - MPMX19_05105 0.13 -0.7
592,340 - MPMX19_05105 0.13 +1.9
592,340 - MPMX19_05105 0.13 -1.4
592,340 - MPMX19_05105 0.13 -0.4
592,340 - MPMX19_05105 0.13 +0.4
592,340 - MPMX19_05105 0.13 -0.4
592,340 - MPMX19_05105 0.13 -1.3
592,340 - MPMX19_05105 0.13 -0.3
592,340 - MPMX19_05105 0.13 -0.9
592,340 - MPMX19_05105 0.13 -0.3
592,340 - MPMX19_05105 0.13 -0.3
592,340 - MPMX19_05105 0.13 -0.6
592,340 - MPMX19_05105 0.13 +0.7
592,340 - MPMX19_05105 0.13 +0.3
592,340 - MPMX19_05105 0.13 -1.6
592,340 - MPMX19_05105 0.13 +1.2
592,340 - MPMX19_05105 0.13 -0.6
592,340 - MPMX19_05105 0.13 +0.9
592,340 - MPMX19_05105 0.13 +0.2
592,340 - MPMX19_05105 0.13 -2.9
592,340 - MPMX19_05105 0.13 +1.1
592,340 - MPMX19_05105 0.13 +0.0
592,340 - MPMX19_05105 0.13 -0.3
592,340 - MPMX19_05105 0.13 +0.7
592,340 - MPMX19_05105 0.13 -1.0
592,340 - MPMX19_05105 0.13 +1.0
592,340 - MPMX19_05105 0.13 -1.0
592,340 - MPMX19_05105 0.13 +0.4
592,340 - MPMX19_05105 0.13 -1.3
592,340 - MPMX19_05105 0.13 +0.1
592,604 - MPMX19_05105 0.48 +0.1
592,815 - MPMX19_05105 0.76 +0.5
592,815 - MPMX19_05105 0.76 -0.2
592,815 - MPMX19_05105 0.76 -0.1
592,853 - MPMX19_05105 0.81 -1.4
592,853 - MPMX19_05105 0.81 +0.2
592,853 - MPMX19_05105 0.81 -1.4

Or see this region's nucleotide sequence