Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05063 and MPMX19_05064 are separated by 174 nucleotides MPMX19_05064 and MPMX19_05065 are separated by 1 nucleotides MPMX19_05065 and MPMX19_05066 are separated by 25 nucleotides
MPMX19_05063: MPMX19_05063 - Histone deacetylase-like amidohydrolase, at 545,985 to 546,974
_05063
MPMX19_05064: MPMX19_05064 - Exodeoxyribonuclease 7 small subunit, at 547,149 to 547,427
_05064
MPMX19_05065: MPMX19_05065 - Farnesyl diphosphate synthase, at 547,429 to 548,331
_05065
MPMX19_05066: MPMX19_05066 - 1-deoxy-D-xylulose-5-phosphate synthase, at 548,357 to 550,270
_05066
Position (kb) 547
548
549 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.612 kb on + strand, within MPMX19_05063 at 546.612 kb on + strand, within MPMX19_05063 at 546.613 kb on - strand, within MPMX19_05063 at 546.613 kb on - strand, within MPMX19_05063 at 546.649 kb on - strand, within MPMX19_05063 at 546.912 kb on + strand at 546.912 kb on + strand at 546.912 kb on + strand at 546.912 kb on + strand at 546.912 kb on + strand at 546.913 kb on - strand at 546.913 kb on - strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 547.022 kb on - strand at 547.039 kb on + strand at 547.039 kb on + strand at 547.039 kb on + strand at 547.040 kb on - strand at 547.040 kb on - strand at 547.040 kb on - strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.302 kb on + strand, within MPMX19_05064 at 547.302 kb on + strand, within MPMX19_05064 at 547.381 kb on + strand, within MPMX19_05064 at 547.381 kb on + strand, within MPMX19_05064 at 547.434 kb on + strand at 547.434 kb on + strand at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065 at 548.071 kb on + strand, within MPMX19_05065 at 548.071 kb on + strand, within MPMX19_05065 at 548.071 kb on + strand, within MPMX19_05065 at 548.071 kb on + strand, within MPMX19_05065 at 548.071 kb on + strand, within MPMX19_05065 at 548.286 kb on + strand at 548.286 kb on + strand at 548.286 kb on + strand at 548.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 546,585 + MPMX19_05063 0.61 -1.0 546,585 + MPMX19_05063 0.61 -1.8 546,585 + MPMX19_05063 0.61 -0.8 546,585 + MPMX19_05063 0.61 -0.2 546,585 + MPMX19_05063 0.61 +0.2 546,585 + MPMX19_05063 0.61 +0.2 546,585 + MPMX19_05063 0.61 -0.6 546,585 + MPMX19_05063 0.61 +0.4 546,585 + MPMX19_05063 0.61 +0.0 546,585 + MPMX19_05063 0.61 -1.6 546,585 + MPMX19_05063 0.61 +2.3 546,585 - MPMX19_05063 0.61 +0.3 546,586 - MPMX19_05063 0.61 -1.7 546,586 - MPMX19_05063 0.61 -0.2 546,586 - MPMX19_05063 0.61 +0.9 546,586 - MPMX19_05063 0.61 +0.9 546,586 - MPMX19_05063 0.61 +0.2 546,586 - MPMX19_05063 0.61 +0.5 546,586 - MPMX19_05063 0.61 -0.2 546,586 - MPMX19_05063 0.61 -0.8 546,612 + MPMX19_05063 0.63 -0.0 546,612 + MPMX19_05063 0.63 -1.0 546,613 - MPMX19_05063 0.63 -1.4 546,613 - MPMX19_05063 0.63 +0.2 546,649 - MPMX19_05063 0.67 -0.8 546,912 + -0.2 546,912 + +0.4 546,912 + -0.2 546,912 + -0.6 546,912 + +0.2 546,913 - -0.8 546,913 - +1.2 546,966 + -0.8 546,966 + +0.4 546,966 + -1.4 546,966 + -1.2 546,966 + -1.4 546,966 + -0.0 546,966 + -0.0 546,966 + -1.0 546,966 + +0.2 546,966 + -0.4 546,966 + -1.4 546,966 + -1.4 546,966 + -0.0 546,966 + +0.0 546,966 + -1.2 546,966 + -1.2 546,966 + -0.2 546,966 + -1.0 546,966 + -0.8 546,966 + +0.5 546,966 + +0.8 546,966 + -2.8 546,966 + +1.8 546,967 - -0.4 546,967 - -0.8 546,967 - +0.3 546,967 - +0.2 546,967 - +1.2 546,967 - -0.6 546,967 - -0.5 546,967 - +2.0 546,967 - -0.6 546,967 - +0.2 546,967 - +1.2 546,967 - -0.2 546,967 - -0.6 546,967 - -2.3 546,967 - +0.6 546,967 - -0.6 546,967 - -0.1 546,967 - -0.0 546,967 - +0.6 546,967 - -0.5 546,967 - -1.8 546,967 - +0.2 546,967 - +0.4 546,967 - -0.6 546,967 - -0.0 546,967 - -1.5 546,967 - -0.5 546,967 - -0.8 547,022 - -0.4 547,039 + -0.7 547,039 + +0.6 547,039 + +0.8 547,040 - -0.8 547,040 - -1.0 547,040 - -0.2 547,061 + +0.0 547,061 + +0.1 547,061 + -0.6 547,061 + -0.2 547,061 + -2.2 547,061 + -0.0 547,061 + -1.9 547,061 + -0.5 547,061 + +0.8 547,061 + -0.8 547,061 + +1.3 547,061 + -0.6 547,062 - -0.1 547,062 - -0.8 547,062 - -0.2 547,062 - -1.8 547,062 - -2.6 547,062 - +0.2 547,062 - -0.5 547,062 - -0.4 547,062 - -0.8 547,122 + -0.1 547,122 + -0.3 547,122 + +0.8 547,122 + +0.2 547,122 + -0.4 547,122 + -0.1 547,122 + +1.2 547,122 + -1.0 547,122 + -0.9 547,122 + -0.8 547,302 + MPMX19_05064 0.55 +0.8 547,302 + MPMX19_05064 0.55 -0.2 547,381 + MPMX19_05064 0.83 +4.1 547,381 + MPMX19_05064 0.83 +0.4 547,434 + +1.2 547,434 + +0.8 547,681 + MPMX19_05065 0.28 -0.4 547,681 + MPMX19_05065 0.28 -1.7 547,681 + MPMX19_05065 0.28 -0.8 547,681 + MPMX19_05065 0.28 +0.3 547,681 + MPMX19_05065 0.28 +0.2 548,071 + MPMX19_05065 0.71 +1.2 548,071 + MPMX19_05065 0.71 -1.6 548,071 + MPMX19_05065 0.71 +0.2 548,071 + MPMX19_05065 0.71 -0.6 548,071 + MPMX19_05065 0.71 +0.4 548,286 + -0.2 548,286 + +1.0 548,286 + +0.8 548,286 + -0.1
Or see this region's nucleotide sequence