Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05053 and MPMX19_05054 are separated by 189 nucleotides MPMX19_05054 and MPMX19_05055 are separated by 498 nucleotides
MPMX19_05053: MPMX19_05053 - hypothetical protein, at 538,481 to 539,254
_05053
MPMX19_05054: MPMX19_05054 - UDP-N-acetylglucosamine 4-epimerase, at 539,444 to 540,388
_05054
MPMX19_05055: MPMX19_05055 - Phosphoserine aminotransferase, at 540,887 to 542,074
_05055
Position (kb) 539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.599 kb on + strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.600 kb on - strand, within MPMX19_05053 at 538.720 kb on - strand, within MPMX19_05053 at 538.749 kb on + strand, within MPMX19_05053 at 538.749 kb on + strand, within MPMX19_05053 at 538.750 kb on - strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.764 kb on + strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.765 kb on - strand, within MPMX19_05053 at 538.818 kb on + strand, within MPMX19_05053 at 538.818 kb on + strand, within MPMX19_05053 at 538.818 kb on + strand, within MPMX19_05053 at 538.818 kb on + strand, within MPMX19_05053 at 538.819 kb on - strand, within MPMX19_05053 at 538.819 kb on - strand, within MPMX19_05053 at 538.833 kb on + strand, within MPMX19_05053 at 538.833 kb on + strand, within MPMX19_05053 at 538.834 kb on - strand, within MPMX19_05053 at 538.834 kb on - strand, within MPMX19_05053 at 538.834 kb on - strand, within MPMX19_05053 at 538.834 kb on - strand, within MPMX19_05053 at 538.980 kb on + strand, within MPMX19_05053 at 538.981 kb on - strand, within MPMX19_05053 at 538.981 kb on - strand, within MPMX19_05053 at 539.040 kb on + strand, within MPMX19_05053 at 539.040 kb on + strand, within MPMX19_05053 at 539.040 kb on + strand, within MPMX19_05053 at 539.041 kb on - strand, within MPMX19_05053 at 539.041 kb on - strand, within MPMX19_05053 at 539.306 kb on + strand at 539.306 kb on + strand at 539.306 kb on + strand at 539.306 kb on + strand at 539.306 kb on + strand at 539.306 kb on + strand at 539.307 kb on - strand at 539.307 kb on - strand at 539.309 kb on - strand at 539.309 kb on - strand at 539.309 kb on - strand at 539.322 kb on + strand at 539.322 kb on + strand at 539.322 kb on + strand at 539.322 kb on + strand at 539.323 kb on - strand at 539.328 kb on + strand at 539.328 kb on + strand at 539.328 kb on + strand at 539.329 kb on - strand at 539.342 kb on + strand at 539.342 kb on + strand at 539.343 kb on - strand at 539.343 kb on - strand at 539.343 kb on - strand at 539.343 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.345 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.393 kb on + strand at 539.422 kb on + strand at 539.423 kb on - strand at 539.664 kb on + strand, within MPMX19_05054 at 539.664 kb on + strand, within MPMX19_05054 at 539.664 kb on + strand, within MPMX19_05054 at 539.664 kb on + strand, within MPMX19_05054 at 539.664 kb on + strand, within MPMX19_05054 at 539.664 kb on + strand, within MPMX19_05054 at 539.664 kb on + strand, within MPMX19_05054 at 539.664 kb on + strand, within MPMX19_05054 at 539.664 kb on + strand, within MPMX19_05054 at 539.665 kb on - strand, within MPMX19_05054 at 539.665 kb on - strand, within MPMX19_05054 at 539.665 kb on - strand, within MPMX19_05054 at 539.665 kb on - strand, within MPMX19_05054 at 539.665 kb on - strand, within MPMX19_05054 at 539.665 kb on - strand, within MPMX19_05054 at 539.665 kb on - strand, within MPMX19_05054 at 539.665 kb on - strand, within MPMX19_05054 at 539.665 kb on - strand, within MPMX19_05054 at 539.665 kb on - strand, within MPMX19_05054 at 539.823 kb on + strand, within MPMX19_05054 at 539.824 kb on - strand, within MPMX19_05054 at 539.853 kb on + strand, within MPMX19_05054 at 539.853 kb on + strand, within MPMX19_05054 at 539.853 kb on + strand, within MPMX19_05054 at 539.853 kb on + strand, within MPMX19_05054 at 539.853 kb on + strand, within MPMX19_05054 at 539.853 kb on + strand, within MPMX19_05054 at 539.854 kb on - strand, within MPMX19_05054 at 539.854 kb on - strand, within MPMX19_05054 at 539.946 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.028 kb on - strand, within MPMX19_05054 at 540.028 kb on - strand, within MPMX19_05054 at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 538,599 + MPMX19_05053 0.15 -0.8 538,599 + MPMX19_05053 0.15 -0.8 538,599 + MPMX19_05053 0.15 -1.6 538,599 + MPMX19_05053 0.15 +0.3 538,599 + MPMX19_05053 0.15 -0.5 538,599 + MPMX19_05053 0.15 -2.2 538,599 + MPMX19_05053 0.15 -0.4 538,599 + MPMX19_05053 0.15 +0.0 538,600 - MPMX19_05053 0.15 -0.4 538,600 - MPMX19_05053 0.15 -0.4 538,600 - MPMX19_05053 0.15 -0.7 538,600 - MPMX19_05053 0.15 -0.1 538,600 - MPMX19_05053 0.15 +0.3 538,600 - MPMX19_05053 0.15 -0.7 538,600 - MPMX19_05053 0.15 -0.3 538,600 - MPMX19_05053 0.15 -0.4 538,600 - MPMX19_05053 0.15 +0.5 538,720 - MPMX19_05053 0.31 -0.2 538,749 + MPMX19_05053 0.35 -0.1 538,749 + MPMX19_05053 0.35 -1.0 538,750 - MPMX19_05053 0.35 -0.3 538,764 + MPMX19_05053 0.37 -0.8 538,764 + MPMX19_05053 0.37 +0.9 538,764 + MPMX19_05053 0.37 +1.5 538,764 + MPMX19_05053 0.37 -0.7 538,764 + MPMX19_05053 0.37 +0.6 538,764 + MPMX19_05053 0.37 -0.0 538,764 + MPMX19_05053 0.37 -0.5 538,764 + MPMX19_05053 0.37 -1.1 538,764 + MPMX19_05053 0.37 -0.8 538,764 + MPMX19_05053 0.37 +2.3 538,765 - MPMX19_05053 0.37 -0.7 538,765 - MPMX19_05053 0.37 -0.2 538,765 - MPMX19_05053 0.37 -0.5 538,765 - MPMX19_05053 0.37 -0.4 538,765 - MPMX19_05053 0.37 +0.3 538,765 - MPMX19_05053 0.37 -0.5 538,765 - MPMX19_05053 0.37 -2.3 538,765 - MPMX19_05053 0.37 -1.7 538,765 - MPMX19_05053 0.37 -0.1 538,765 - MPMX19_05053 0.37 +1.6 538,818 + MPMX19_05053 0.44 +1.0 538,818 + MPMX19_05053 0.44 -0.3 538,818 + MPMX19_05053 0.44 -1.4 538,818 + MPMX19_05053 0.44 +0.2 538,819 - MPMX19_05053 0.44 -0.6 538,819 - MPMX19_05053 0.44 -1.2 538,833 + MPMX19_05053 0.45 -1.9 538,833 + MPMX19_05053 0.45 -1.2 538,834 - MPMX19_05053 0.46 +1.3 538,834 - MPMX19_05053 0.46 -2.1 538,834 - MPMX19_05053 0.46 +1.2 538,834 - MPMX19_05053 0.46 -1.7 538,980 + MPMX19_05053 0.64 -0.7 538,981 - MPMX19_05053 0.65 -1.0 538,981 - MPMX19_05053 0.65 -1.2 539,040 + MPMX19_05053 0.72 -1.3 539,040 + MPMX19_05053 0.72 -2.8 539,040 + MPMX19_05053 0.72 +1.2 539,041 - MPMX19_05053 0.72 +0.5 539,041 - MPMX19_05053 0.72 -0.6 539,306 + +0.5 539,306 + +0.4 539,306 + +1.4 539,306 + +0.4 539,306 + +0.5 539,306 + +1.8 539,307 - -2.3 539,307 - -0.9 539,309 - -0.4 539,309 - -0.2 539,309 - -0.2 539,322 + -1.2 539,322 + -0.0 539,322 + -0.1 539,322 + -1.0 539,323 - -1.5 539,328 + -1.7 539,328 + -1.6 539,328 + -2.0 539,329 - -0.2 539,342 + -0.2 539,342 + -0.4 539,343 - -0.1 539,343 - +0.8 539,343 - -1.2 539,343 - +0.2 539,345 - -2.6 539,345 - +0.8 539,345 - -0.2 539,345 - +0.2 539,345 - -0.6 539,345 - -0.1 539,345 - -0.4 539,345 - -0.5 539,351 - +0.6 539,351 - +0.4 539,351 - -0.5 539,351 - -0.1 539,351 - -1.4 539,351 - -1.9 539,351 - -0.2 539,351 - -0.6 539,351 - -1.8 539,351 - -0.5 539,351 - +0.2 539,351 - -1.7 539,393 + +0.2 539,422 + +0.7 539,423 - -1.1 539,664 + MPMX19_05054 0.23 -1.6 539,664 + MPMX19_05054 0.23 +1.1 539,664 + MPMX19_05054 0.23 -1.0 539,664 + MPMX19_05054 0.23 +1.2 539,664 + MPMX19_05054 0.23 -0.6 539,664 + MPMX19_05054 0.23 -0.9 539,664 + MPMX19_05054 0.23 -0.2 539,664 + MPMX19_05054 0.23 -0.5 539,664 + MPMX19_05054 0.23 -1.3 539,665 - MPMX19_05054 0.23 -0.9 539,665 - MPMX19_05054 0.23 -0.6 539,665 - MPMX19_05054 0.23 +2.8 539,665 - MPMX19_05054 0.23 -0.8 539,665 - MPMX19_05054 0.23 -0.0 539,665 - MPMX19_05054 0.23 +0.8 539,665 - MPMX19_05054 0.23 -2.4 539,665 - MPMX19_05054 0.23 -0.7 539,665 - MPMX19_05054 0.23 -0.4 539,665 - MPMX19_05054 0.23 +1.0 539,823 + MPMX19_05054 0.40 -0.8 539,824 - MPMX19_05054 0.40 -0.4 539,853 + MPMX19_05054 0.43 +0.4 539,853 + MPMX19_05054 0.43 -1.6 539,853 + MPMX19_05054 0.43 -1.0 539,853 + MPMX19_05054 0.43 -0.8 539,853 + MPMX19_05054 0.43 -1.1 539,853 + MPMX19_05054 0.43 -1.3 539,854 - MPMX19_05054 0.43 -0.9 539,854 - MPMX19_05054 0.43 -1.2 539,946 + MPMX19_05054 0.53 -1.2 540,006 + MPMX19_05054 0.59 +0.2 540,006 + MPMX19_05054 0.59 +1.2 540,006 + MPMX19_05054 0.59 -1.7 540,006 + MPMX19_05054 0.59 -1.2 540,006 + MPMX19_05054 0.59 +0.8 540,006 + MPMX19_05054 0.59 -1.5 540,006 + MPMX19_05054 0.59 +1.8 540,006 + MPMX19_05054 0.59 +0.2 540,006 + MPMX19_05054 0.59 +0.1 540,006 + MPMX19_05054 0.59 +0.2 540,006 + MPMX19_05054 0.59 -0.0 540,007 - MPMX19_05054 0.60 -0.2 540,007 - MPMX19_05054 0.60 -0.5 540,007 - MPMX19_05054 0.60 -1.2 540,007 - MPMX19_05054 0.60 -1.5 540,007 - MPMX19_05054 0.60 -0.7 540,007 - MPMX19_05054 0.60 +1.0 540,007 - MPMX19_05054 0.60 -2.4 540,007 - MPMX19_05054 0.60 +0.3 540,027 + MPMX19_05054 0.62 -1.6 540,027 + MPMX19_05054 0.62 -0.6 540,027 + MPMX19_05054 0.62 -0.4 540,027 + MPMX19_05054 0.62 -1.0 540,027 + MPMX19_05054 0.62 -1.1 540,027 + MPMX19_05054 0.62 +0.4 540,027 + MPMX19_05054 0.62 -0.7 540,027 + MPMX19_05054 0.62 -1.8 540,028 - MPMX19_05054 0.62 -0.3 540,028 - MPMX19_05054 0.62 -0.2 540,378 + -0.1 540,378 + -1.2 540,378 + -2.9 540,378 + -0.1 540,378 + +0.3 540,378 + +0.2 540,378 + +0.2 540,378 + -0.2 540,378 + -0.2 540,378 + -0.0 540,378 + +0.2 540,378 + -0.6 540,378 + -1.0 540,378 + -0.2 540,378 + +1.5 540,378 + -0.8 540,378 + -2.1 540,378 + +0.4 540,379 - +0.2 540,379 - -0.1 540,379 - -0.6 540,379 - +0.2 540,379 - +0.2 540,379 - -1.2 540,379 - +0.3 540,379 - +1.3 540,379 - -0.6 540,379 - +1.8 540,504 + -0.1
Or see this region's nucleotide sequence