Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05048

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05047 and MPMX19_05048 are separated by 63 nucleotidesMPMX19_05048 and MPMX19_05049 overlap by 14 nucleotidesMPMX19_05049 and MPMX19_05050 are separated by 5 nucleotides MPMX19_05047: MPMX19_05047 - Glycine cleavage system transcriptional activator, at 532,464 to 533,360 _05047 MPMX19_05048: MPMX19_05048 - hypothetical protein, at 533,424 to 533,720 _05048 MPMX19_05049: MPMX19_05049 - hypothetical protein, at 533,707 to 534,069 _05049 MPMX19_05050: MPMX19_05050 - Inner membrane ABC transporter ATP-binding protein YddA, at 534,075 to 535,871 _05050 Position (kb) 533 534Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 532.434 kb on + strandat 532.434 kb on + strandat 532.435 kb on - strandat 532.677 kb on + strand, within MPMX19_05047at 532.677 kb on + strand, within MPMX19_05047at 532.677 kb on + strand, within MPMX19_05047at 532.677 kb on + strand, within MPMX19_05047at 532.677 kb on + strand, within MPMX19_05047at 532.677 kb on + strand, within MPMX19_05047at 532.678 kb on - strand, within MPMX19_05047at 532.678 kb on - strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.268 kb on + strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.269 kb on - strand, within MPMX19_05047at 533.271 kb on + strandat 533.271 kb on + strandat 533.271 kb on + strandat 533.271 kb on + strandat 533.271 kb on + strandat 533.271 kb on + strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.272 kb on - strandat 533.412 kb on + strandat 533.412 kb on + strandat 533.412 kb on + strandat 533.413 kb on - strandat 533.413 kb on - strandat 533.413 kb on - strandat 533.413 kb on - strandat 533.413 kb on - strandat 533.413 kb on - strandat 533.538 kb on + strand, within MPMX19_05048at 533.539 kb on - strand, within MPMX19_05048at 533.550 kb on + strand, within MPMX19_05048at 533.550 kb on + strand, within MPMX19_05048at 533.550 kb on + strand, within MPMX19_05048at 533.550 kb on + strand, within MPMX19_05048at 533.550 kb on + strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.551 kb on - strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.552 kb on + strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.553 kb on - strand, within MPMX19_05048at 533.617 kb on - strand, within MPMX19_05048at 533.617 kb on - strand, within MPMX19_05048at 533.637 kb on + strand, within MPMX19_05048at 533.637 kb on + strand, within MPMX19_05048at 533.638 kb on - strand, within MPMX19_05048at 533.638 kb on - strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.639 kb on + strand, within MPMX19_05048at 533.640 kb on - strand, within MPMX19_05048at 533.640 kb on - strand, within MPMX19_05048at 533.872 kb on + strand, within MPMX19_05049at 534.049 kb on - strandat 534.049 kb on - strandat 534.214 kb on + strandat 534.214 kb on + strandat 534.214 kb on + strandat 534.214 kb on + strandat 534.215 kb on - strandat 534.215 kb on - strandat 534.215 kb on - strandat 534.215 kb on - strandat 534.265 kb on + strand, within MPMX19_05050at 534.265 kb on + strand, within MPMX19_05050at 534.265 kb on + strand, within MPMX19_05050at 534.265 kb on + strand, within MPMX19_05050at 534.266 kb on - strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.281 kb on + strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050at 534.282 kb on - strand, within MPMX19_05050at 534.445 kb on + strand, within MPMX19_05050at 534.446 kb on - strand, within MPMX19_05050at 534.446 kb on - strand, within MPMX19_05050at 534.481 kb on + strand, within MPMX19_05050at 534.481 kb on + strand, within MPMX19_05050at 534.481 kb on + strand, within MPMX19_05050at 534.481 kb on + strand, within MPMX19_05050at 534.481 kb on + strand, within MPMX19_05050at 534.482 kb on - strand, within MPMX19_05050at 534.482 kb on - strand, within MPMX19_05050at 534.482 kb on - strand, within MPMX19_05050at 534.539 kb on + strand, within MPMX19_05050at 534.539 kb on + strand, within MPMX19_05050at 534.540 kb on - strand, within MPMX19_05050at 534.540 kb on - strand, within MPMX19_05050at 534.540 kb on - strand, within MPMX19_05050at 534.540 kb on - strand, within MPMX19_05050

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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532,434 + -0.4
532,434 + -1.6
532,435 - +0.8
532,677 + MPMX19_05047 0.24 +0.1
532,677 + MPMX19_05047 0.24 +0.9
532,677 + MPMX19_05047 0.24 -1.2
532,677 + MPMX19_05047 0.24 +0.6
532,677 + MPMX19_05047 0.24 +0.2
532,677 + MPMX19_05047 0.24 -0.4
532,678 - MPMX19_05047 0.24 +0.2
532,678 - MPMX19_05047 0.24 -0.4
533,268 + MPMX19_05047 0.90 +0.4
533,268 + MPMX19_05047 0.90 +0.2
533,268 + MPMX19_05047 0.90 +0.9
533,268 + MPMX19_05047 0.90 -1.1
533,268 + MPMX19_05047 0.90 +0.5
533,268 + MPMX19_05047 0.90 +1.8
533,268 + MPMX19_05047 0.90 +0.0
533,268 + MPMX19_05047 0.90 +1.8
533,268 + MPMX19_05047 0.90 -1.4
533,269 - MPMX19_05047 0.90 +0.4
533,269 - MPMX19_05047 0.90 -0.6
533,269 - MPMX19_05047 0.90 -0.1
533,269 - MPMX19_05047 0.90 -0.7
533,269 - MPMX19_05047 0.90 +1.8
533,269 - MPMX19_05047 0.90 -1.2
533,269 - MPMX19_05047 0.90 -0.6
533,269 - MPMX19_05047 0.90 -0.2
533,269 - MPMX19_05047 0.90 -0.0
533,269 - MPMX19_05047 0.90 -0.1
533,269 - MPMX19_05047 0.90 -3.1
533,271 + -0.6
533,271 + -0.1
533,271 + +0.2
533,271 + -0.0
533,271 + -0.3
533,271 + -0.6
533,272 - +0.2
533,272 - -1.3
533,272 - +0.4
533,272 - +0.7
533,272 - +0.4
533,272 - -0.2
533,272 - -0.1
533,412 + +0.0
533,412 + -1.6
533,412 + -0.0
533,413 - +0.0
533,413 - -1.0
533,413 - +0.2
533,413 - +0.2
533,413 - -0.9
533,413 - +0.5
533,538 + MPMX19_05048 0.38 +0.5
533,539 - MPMX19_05048 0.39 -1.7
533,550 + MPMX19_05048 0.42 +0.2
533,550 + MPMX19_05048 0.42 +1.4
533,550 + MPMX19_05048 0.42 -1.2
533,550 + MPMX19_05048 0.42 +0.2
533,550 + MPMX19_05048 0.42 -1.1
533,551 - MPMX19_05048 0.43 +0.8
533,551 - MPMX19_05048 0.43 +0.2
533,551 - MPMX19_05048 0.43 -0.5
533,551 - MPMX19_05048 0.43 -1.6
533,551 - MPMX19_05048 0.43 -1.5
533,551 - MPMX19_05048 0.43 -1.3
533,551 - MPMX19_05048 0.43 -0.7
533,552 + MPMX19_05048 0.43 -0.4
533,552 + MPMX19_05048 0.43 +0.3
533,552 + MPMX19_05048 0.43 +0.4
533,552 + MPMX19_05048 0.43 -0.6
533,552 + MPMX19_05048 0.43 -0.8
533,552 + MPMX19_05048 0.43 +0.2
533,553 - MPMX19_05048 0.43 -1.8
533,553 - MPMX19_05048 0.43 -2.4
533,553 - MPMX19_05048 0.43 -1.6
533,553 - MPMX19_05048 0.43 -2.1
533,553 - MPMX19_05048 0.43 -0.4
533,553 - MPMX19_05048 0.43 -0.2
533,617 - MPMX19_05048 0.65 +0.2
533,617 - MPMX19_05048 0.65 -0.3
533,637 + MPMX19_05048 0.72 -0.0
533,637 + MPMX19_05048 0.72 -0.7
533,638 - MPMX19_05048 0.72 +0.5
533,638 - MPMX19_05048 0.72 -1.4
533,639 + MPMX19_05048 0.72 -0.7
533,639 + MPMX19_05048 0.72 +1.8
533,639 + MPMX19_05048 0.72 -1.6
533,639 + MPMX19_05048 0.72 -0.6
533,639 + MPMX19_05048 0.72 -1.8
533,639 + MPMX19_05048 0.72 -1.9
533,640 - MPMX19_05048 0.73 -0.4
533,640 - MPMX19_05048 0.73 -0.2
533,872 + MPMX19_05049 0.45 +1.8
534,049 - +0.1
534,049 - -0.2
534,214 + -0.2
534,214 + -0.8
534,214 + -0.2
534,214 + -0.2
534,215 - -0.3
534,215 - +0.8
534,215 - +0.4
534,215 - -0.7
534,265 + MPMX19_05050 0.11 -0.8
534,265 + MPMX19_05050 0.11 +0.1
534,265 + MPMX19_05050 0.11 +0.4
534,265 + MPMX19_05050 0.11 +1.4
534,266 - MPMX19_05050 0.11 -2.0
534,281 + MPMX19_05050 0.11 +1.2
534,281 + MPMX19_05050 0.11 -0.7
534,281 + MPMX19_05050 0.11 +0.3
534,281 + MPMX19_05050 0.11 +0.1
534,281 + MPMX19_05050 0.11 -1.2
534,281 + MPMX19_05050 0.11 -0.4
534,281 + MPMX19_05050 0.11 -0.5
534,282 - MPMX19_05050 0.12 +1.4
534,282 - MPMX19_05050 0.12 -0.2
534,282 - MPMX19_05050 0.12 -1.2
534,282 - MPMX19_05050 0.12 -1.7
534,282 - MPMX19_05050 0.12 -1.2
534,282 - MPMX19_05050 0.12 -0.1
534,445 + MPMX19_05050 0.21 -0.6
534,446 - MPMX19_05050 0.21 -0.4
534,446 - MPMX19_05050 0.21 -0.1
534,481 + MPMX19_05050 0.23 -0.2
534,481 + MPMX19_05050 0.23 -0.2
534,481 + MPMX19_05050 0.23 -1.0
534,481 + MPMX19_05050 0.23 -0.0
534,481 + MPMX19_05050 0.23 +0.8
534,482 - MPMX19_05050 0.23 -1.1
534,482 - MPMX19_05050 0.23 +0.5
534,482 - MPMX19_05050 0.23 -0.7
534,539 + MPMX19_05050 0.26 -0.2
534,539 + MPMX19_05050 0.26 +1.0
534,540 - MPMX19_05050 0.26 -0.9
534,540 - MPMX19_05050 0.26 +0.2
534,540 - MPMX19_05050 0.26 +0.6
534,540 - MPMX19_05050 0.26 +0.5

Or see this region's nucleotide sequence