Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05045 and MPMX19_05046 are separated by 79 nucleotides MPMX19_05046 and MPMX19_05047 are separated by 127 nucleotides
MPMX19_05045: MPMX19_05045 - Succinate-semialdehyde dehydrogenase [NADP(+)], at 529,105 to 530,598
_05045
MPMX19_05046: MPMX19_05046 - Acetolactate synthase isozyme 2 large subunit, at 530,678 to 532,336
_05046
MPMX19_05047: MPMX19_05047 - Glycine cleavage system transcriptional activator, at 532,464 to 533,360
_05047
Position (kb) 530
531
532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 529.780 kb on + strand, within MPMX19_05045 at 529.780 kb on + strand, within MPMX19_05045 at 529.780 kb on + strand, within MPMX19_05045 at 529.780 kb on + strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 530.211 kb on + strand, within MPMX19_05045 at 530.211 kb on + strand, within MPMX19_05045 at 530.211 kb on + strand, within MPMX19_05045 at 530.212 kb on - strand, within MPMX19_05045 at 530.212 kb on - strand, within MPMX19_05045 at 530.212 kb on - strand, within MPMX19_05045 at 530.246 kb on + strand, within MPMX19_05045 at 530.246 kb on + strand, within MPMX19_05045 at 530.321 kb on + strand, within MPMX19_05045 at 530.321 kb on + strand, within MPMX19_05045 at 530.321 kb on + strand, within MPMX19_05045 at 530.322 kb on - strand, within MPMX19_05045 at 530.322 kb on - strand, within MPMX19_05045 at 530.322 kb on - strand, within MPMX19_05045 at 530.322 kb on - strand, within MPMX19_05045 at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.666 kb on + strand at 530.666 kb on + strand at 530.666 kb on + strand at 530.667 kb on - strand at 530.667 kb on - strand at 530.667 kb on - strand at 530.908 kb on - strand, within MPMX19_05046 at 530.908 kb on - strand, within MPMX19_05046 at 530.908 kb on - strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 531.100 kb on - strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.414 kb on + strand, within MPMX19_05046 at 531.415 kb on - strand, within MPMX19_05046 at 531.415 kb on - strand, within MPMX19_05046 at 531.415 kb on - strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.603 kb on + strand, within MPMX19_05046 at 531.604 kb on - strand, within MPMX19_05046 at 531.604 kb on - strand, within MPMX19_05046 at 531.993 kb on + strand, within MPMX19_05046 at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.360 kb on - strand at 532.360 kb on - strand at 532.434 kb on + strand at 532.434 kb on + strand at 532.435 kb on - strand at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.678 kb on - strand, within MPMX19_05047 at 532.678 kb on - strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 529,780 + MPMX19_05045 0.45 +0.6 529,780 + MPMX19_05045 0.45 -0.7 529,780 + MPMX19_05045 0.45 -0.7 529,780 + MPMX19_05045 0.45 +0.3 529,781 - MPMX19_05045 0.45 -1.6 529,781 - MPMX19_05045 0.45 -0.4 529,781 - MPMX19_05045 0.45 -0.6 529,781 - MPMX19_05045 0.45 -1.9 529,781 - MPMX19_05045 0.45 -1.2 529,781 - MPMX19_05045 0.45 -0.6 529,781 - MPMX19_05045 0.45 -1.1 529,781 - MPMX19_05045 0.45 -0.0 529,781 - MPMX19_05045 0.45 -1.7 529,781 - MPMX19_05045 0.45 -1.9 529,781 - MPMX19_05045 0.45 -0.3 529,781 - MPMX19_05045 0.45 -0.3 529,781 - MPMX19_05045 0.45 -1.6 529,781 - MPMX19_05045 0.45 -1.3 530,211 + MPMX19_05045 0.74 +0.2 530,211 + MPMX19_05045 0.74 -0.7 530,211 + MPMX19_05045 0.74 -1.1 530,212 - MPMX19_05045 0.74 -0.6 530,212 - MPMX19_05045 0.74 -0.8 530,212 - MPMX19_05045 0.74 -1.4 530,246 + MPMX19_05045 0.76 -0.6 530,246 + MPMX19_05045 0.76 -0.6 530,321 + MPMX19_05045 0.81 -0.7 530,321 + MPMX19_05045 0.81 +0.0 530,321 + MPMX19_05045 0.81 +0.4 530,322 - MPMX19_05045 0.81 +0.6 530,322 - MPMX19_05045 0.81 +0.2 530,322 - MPMX19_05045 0.81 +0.4 530,322 - MPMX19_05045 0.81 -0.9 530,631 + -1.0 530,631 + -1.9 530,631 + -1.6 530,631 + -0.2 530,631 + -0.4 530,631 + +0.0 530,631 + -1.0 530,631 + -0.8 530,631 + +0.2 530,631 + +1.8 530,631 + -0.4 530,631 + +1.8 530,631 + -1.4 530,631 + -0.6 530,631 + -0.2 530,631 + -0.0 530,631 + -0.9 530,631 + -1.2 530,631 + +0.2 530,631 + +0.8 530,631 + -0.4 530,631 + +0.8 530,631 + +1.5 530,631 + -1.2 530,631 + +0.8 530,632 - -2.1 530,632 - -0.8 530,632 - -0.7 530,632 - -0.8 530,632 - +0.5 530,632 - -1.6 530,632 - +1.2 530,632 - +0.0 530,632 - -0.4 530,632 - -3.0 530,632 - +0.2 530,632 - -0.6 530,632 - -2.0 530,632 - -0.2 530,632 - -0.8 530,632 - -0.2 530,632 - +0.9 530,632 - -1.1 530,632 - +0.0 530,632 - -0.9 530,632 - +0.4 530,632 - -0.1 530,632 - -1.6 530,632 - +0.0 530,666 + -0.9 530,666 + -0.2 530,666 + -2.0 530,667 - -1.2 530,667 - -1.3 530,667 - +0.2 530,908 - MPMX19_05046 0.14 +0.2 530,908 - MPMX19_05046 0.14 -0.6 530,908 - MPMX19_05046 0.14 -0.6 530,940 + MPMX19_05046 0.16 -0.4 530,940 + MPMX19_05046 0.16 -0.6 530,940 + MPMX19_05046 0.16 +0.8 530,940 + MPMX19_05046 0.16 -0.8 530,940 + MPMX19_05046 0.16 +1.1 530,940 + MPMX19_05046 0.16 -1.2 530,940 + MPMX19_05046 0.16 -1.0 530,940 + MPMX19_05046 0.16 -1.9 530,940 + MPMX19_05046 0.16 -1.8 530,940 + MPMX19_05046 0.16 +0.2 530,940 + MPMX19_05046 0.16 -1.0 530,940 + MPMX19_05046 0.16 -0.6 530,940 + MPMX19_05046 0.16 -0.2 530,941 - MPMX19_05046 0.16 -0.5 530,941 - MPMX19_05046 0.16 +0.3 530,941 - MPMX19_05046 0.16 +0.3 530,941 - MPMX19_05046 0.16 -0.2 530,941 - MPMX19_05046 0.16 -0.4 530,941 - MPMX19_05046 0.16 +0.8 530,941 - MPMX19_05046 0.16 +0.8 530,941 - MPMX19_05046 0.16 +0.1 530,941 - MPMX19_05046 0.16 +0.6 531,100 - MPMX19_05046 0.25 +0.5 531,177 + MPMX19_05046 0.30 -2.0 531,177 + MPMX19_05046 0.30 -2.8 531,177 + MPMX19_05046 0.30 -0.6 531,177 + MPMX19_05046 0.30 -0.6 531,177 + MPMX19_05046 0.30 -1.4 531,177 + MPMX19_05046 0.30 +1.4 531,177 + MPMX19_05046 0.30 -0.3 531,177 + MPMX19_05046 0.30 -1.0 531,177 + MPMX19_05046 0.30 +2.1 531,178 - MPMX19_05046 0.30 -1.3 531,178 - MPMX19_05046 0.30 -1.8 531,178 - MPMX19_05046 0.30 -1.6 531,178 - MPMX19_05046 0.30 +0.3 531,178 - MPMX19_05046 0.30 +0.5 531,178 - MPMX19_05046 0.30 -0.4 531,178 - MPMX19_05046 0.30 +0.6 531,178 - MPMX19_05046 0.30 +1.3 531,178 - MPMX19_05046 0.30 -0.2 531,178 - MPMX19_05046 0.30 -1.1 531,178 - MPMX19_05046 0.30 -1.5 531,297 + MPMX19_05046 0.37 -2.6 531,297 + MPMX19_05046 0.37 +1.4 531,297 + MPMX19_05046 0.37 +1.0 531,297 + MPMX19_05046 0.37 +0.4 531,297 + MPMX19_05046 0.37 -1.0 531,297 + MPMX19_05046 0.37 -1.7 531,297 + MPMX19_05046 0.37 -1.8 531,297 + MPMX19_05046 0.37 -1.6 531,298 - MPMX19_05046 0.37 -1.6 531,298 - MPMX19_05046 0.37 -0.6 531,298 - MPMX19_05046 0.37 +0.1 531,298 - MPMX19_05046 0.37 +0.7 531,298 - MPMX19_05046 0.37 +0.2 531,298 - MPMX19_05046 0.37 -0.0 531,298 - MPMX19_05046 0.37 +0.1 531,298 - MPMX19_05046 0.37 -0.9 531,298 - MPMX19_05046 0.37 -0.0 531,298 - MPMX19_05046 0.37 +0.4 531,298 - MPMX19_05046 0.37 -0.4 531,298 - MPMX19_05046 0.37 +0.1 531,298 - MPMX19_05046 0.37 -1.0 531,298 - MPMX19_05046 0.37 -1.1 531,298 - MPMX19_05046 0.37 -1.7 531,298 - MPMX19_05046 0.37 +0.5 531,414 + MPMX19_05046 0.44 +0.2 531,415 - MPMX19_05046 0.44 -1.6 531,415 - MPMX19_05046 0.44 -1.8 531,415 - MPMX19_05046 0.44 -0.1 531,492 + MPMX19_05046 0.49 +1.2 531,492 + MPMX19_05046 0.49 -0.7 531,492 + MPMX19_05046 0.49 -0.6 531,492 + MPMX19_05046 0.49 -0.1 531,492 + MPMX19_05046 0.49 +0.1 531,492 - MPMX19_05046 0.49 -0.0 531,493 - MPMX19_05046 0.49 +0.2 531,493 - MPMX19_05046 0.49 -0.3 531,493 - MPMX19_05046 0.49 -0.1 531,493 - MPMX19_05046 0.49 -1.2 531,493 - MPMX19_05046 0.49 +0.9 531,493 - MPMX19_05046 0.49 -0.2 531,493 - MPMX19_05046 0.49 -0.6 531,603 + MPMX19_05046 0.56 -0.8 531,604 - MPMX19_05046 0.56 -0.4 531,604 - MPMX19_05046 0.56 -0.0 531,993 + MPMX19_05046 0.79 +1.1 532,254 + -0.2 532,254 + +0.1 532,254 + -0.4 532,254 + +0.8 532,254 + +0.4 532,254 + -0.8 532,254 + +1.4 532,255 - +0.2 532,255 - -0.4 532,255 - +2.4 532,255 - -0.8 532,255 - -1.0 532,255 - -0.6 532,255 - +0.2 532,360 - +0.5 532,360 - +0.9 532,434 + -0.4 532,434 + -1.6 532,435 - +0.8 532,677 + MPMX19_05047 0.24 +0.1 532,677 + MPMX19_05047 0.24 +0.9 532,677 + MPMX19_05047 0.24 -1.2 532,677 + MPMX19_05047 0.24 +0.6 532,677 + MPMX19_05047 0.24 +0.2 532,677 + MPMX19_05047 0.24 -0.4 532,678 - MPMX19_05047 0.24 +0.2 532,678 - MPMX19_05047 0.24 -0.4 533,268 + MPMX19_05047 0.90 +0.4 533,268 + MPMX19_05047 0.90 +0.2 533,268 + MPMX19_05047 0.90 +0.9 533,268 + MPMX19_05047 0.90 -1.1 533,268 + MPMX19_05047 0.90 +0.5 533,268 + MPMX19_05047 0.90 +1.8 533,268 + MPMX19_05047 0.90 +0.0 533,268 + MPMX19_05047 0.90 +1.8 533,268 + MPMX19_05047 0.90 -1.4 533,269 - MPMX19_05047 0.90 +0.4 533,269 - MPMX19_05047 0.90 -0.6 533,269 - MPMX19_05047 0.90 -0.1 533,269 - MPMX19_05047 0.90 -0.7 533,269 - MPMX19_05047 0.90 +1.8 533,269 - MPMX19_05047 0.90 -1.2 533,269 - MPMX19_05047 0.90 -0.6 533,269 - MPMX19_05047 0.90 -0.2 533,269 - MPMX19_05047 0.90 -0.0 533,269 - MPMX19_05047 0.90 -0.1 533,269 - MPMX19_05047 0.90 -3.1 533,271 + -0.6 533,271 + -0.1 533,271 + +0.2 533,271 + -0.0 533,271 + -0.3 533,271 + -0.6 533,272 - +0.2 533,272 - -1.3 533,272 - +0.4 533,272 - +0.7 533,272 - +0.4 533,272 - -0.2 533,272 - -0.1
Or see this region's nucleotide sequence