Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05030

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05029 and MPMX19_05030 are separated by 10 nucleotidesMPMX19_05030 and MPMX19_05031 are separated by 90 nucleotidesMPMX19_05031 and MPMX19_05032 overlap by 4 nucleotides MPMX19_05029: MPMX19_05029 - Putative xanthine dehydrogenase molybdenum-binding subunit XdhA, at 515,012 to 517,402 _05029 MPMX19_05030: MPMX19_05030 - hypothetical protein, at 517,413 to 518,276 _05030 MPMX19_05031: MPMX19_05031 - ATP synthase gamma chain, at 518,367 to 519,209 _05031 MPMX19_05032: MPMX19_05032 - ATP synthase subunit alpha, at 519,206 to 520,735 _05032 Position (kb) 517 518 519Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 516.434 kb on + strand, within MPMX19_05029at 516.434 kb on + strand, within MPMX19_05029at 516.434 kb on + strand, within MPMX19_05029at 516.434 kb on + strand, within MPMX19_05029at 516.434 kb on + strand, within MPMX19_05029at 516.434 kb on + strand, within MPMX19_05029at 516.435 kb on - strand, within MPMX19_05029at 516.464 kb on + strand, within MPMX19_05029at 516.464 kb on + strand, within MPMX19_05029at 516.464 kb on + strand, within MPMX19_05029at 516.464 kb on + strand, within MPMX19_05029at 516.464 kb on + strand, within MPMX19_05029at 516.464 kb on + strand, within MPMX19_05029at 516.465 kb on - strand, within MPMX19_05029at 516.465 kb on - strand, within MPMX19_05029at 516.465 kb on - strand, within MPMX19_05029at 516.465 kb on - strand, within MPMX19_05029at 516.465 kb on - strand, within MPMX19_05029at 516.465 kb on - strand, within MPMX19_05029at 516.521 kb on + strand, within MPMX19_05029at 516.521 kb on + strand, within MPMX19_05029at 516.521 kb on + strand, within MPMX19_05029at 516.521 kb on + strand, within MPMX19_05029at 516.521 kb on + strand, within MPMX19_05029at 516.522 kb on - strand, within MPMX19_05029at 516.522 kb on - strand, within MPMX19_05029at 516.522 kb on - strand, within MPMX19_05029at 516.655 kb on + strand, within MPMX19_05029at 516.655 kb on + strand, within MPMX19_05029at 516.655 kb on + strand, within MPMX19_05029at 516.812 kb on + strand, within MPMX19_05029at 516.812 kb on + strand, within MPMX19_05029at 516.812 kb on + strand, within MPMX19_05029at 516.812 kb on + strand, within MPMX19_05029at 516.812 kb on + strand, within MPMX19_05029at 516.812 kb on + strand, within MPMX19_05029at 516.812 kb on + strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.813 kb on - strand, within MPMX19_05029at 516.848 kb on + strand, within MPMX19_05029at 516.848 kb on + strand, within MPMX19_05029at 516.848 kb on + strand, within MPMX19_05029at 516.848 kb on + strand, within MPMX19_05029at 516.848 kb on + strand, within MPMX19_05029at 516.848 kb on + strand, within MPMX19_05029at 516.848 kb on + strand, within MPMX19_05029at 516.848 kb on + strand, within MPMX19_05029at 516.848 kb on + strand, within MPMX19_05029at 516.848 kb on + strand, within MPMX19_05029at 516.849 kb on - strand, within MPMX19_05029at 516.849 kb on - strand, within MPMX19_05029at 516.849 kb on - strand, within MPMX19_05029at 516.902 kb on + strand, within MPMX19_05029at 516.902 kb on + strand, within MPMX19_05029at 516.902 kb on + strand, within MPMX19_05029at 516.902 kb on + strand, within MPMX19_05029at 516.902 kb on + strand, within MPMX19_05029at 516.902 kb on + strand, within MPMX19_05029at 516.902 kb on + strand, within MPMX19_05029at 516.903 kb on - strand, within MPMX19_05029at 516.903 kb on - strand, within MPMX19_05029at 516.903 kb on - strand, within MPMX19_05029at 516.903 kb on - strand, within MPMX19_05029at 516.903 kb on - strand, within MPMX19_05029at 516.903 kb on - strand, within MPMX19_05029at 516.905 kb on + strand, within MPMX19_05029at 516.905 kb on + strand, within MPMX19_05029at 516.906 kb on - strand, within MPMX19_05029at 516.906 kb on - strand, within MPMX19_05029at 516.915 kb on - strand, within MPMX19_05029at 516.962 kb on + strand, within MPMX19_05029at 516.962 kb on + strand, within MPMX19_05029at 516.962 kb on + strand, within MPMX19_05029at 516.962 kb on + strand, within MPMX19_05029at 516.962 kb on + strand, within MPMX19_05029at 516.962 kb on + strand, within MPMX19_05029at 516.962 kb on + strand, within MPMX19_05029at 516.962 kb on + strand, within MPMX19_05029at 516.962 kb on + strand, within MPMX19_05029at 516.962 kb on + strand, within MPMX19_05029at 516.962 kb on + strand, within MPMX19_05029at 516.963 kb on - strand, within MPMX19_05029at 516.963 kb on - strand, within MPMX19_05029at 516.963 kb on - strand, within MPMX19_05029at 516.963 kb on - strand, within MPMX19_05029at 516.963 kb on - strand, within MPMX19_05029at 516.963 kb on - strand, within MPMX19_05029at 516.963 kb on - strand, within MPMX19_05029at 516.963 kb on - strand, within MPMX19_05029at 516.963 kb on - strand, within MPMX19_05029at 516.963 kb on - strand, within MPMX19_05029at 516.974 kb on - strand, within MPMX19_05029at 517.130 kb on + strand, within MPMX19_05029at 517.130 kb on + strand, within MPMX19_05029at 517.130 kb on + strand, within MPMX19_05029at 517.130 kb on + strand, within MPMX19_05029at 517.130 kb on + strand, within MPMX19_05029at 517.130 kb on + strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.131 kb on - strand, within MPMX19_05029at 517.901 kb on + strand, within MPMX19_05030at 517.901 kb on + strand, within MPMX19_05030at 517.902 kb on - strand, within MPMX19_05030at 517.956 kb on + strand, within MPMX19_05030at 517.956 kb on + strand, within MPMX19_05030at 517.957 kb on - strand, within MPMX19_05030at 517.957 kb on - strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.032 kb on - strand, within MPMX19_05030at 518.032 kb on - strand, within MPMX19_05030at 518.032 kb on - strand, within MPMX19_05030at 518.032 kb on - strand, within MPMX19_05030at 518.032 kb on - strand, within MPMX19_05030at 518.285 kb on + strandat 518.285 kb on + strandat 518.285 kb on + strandat 518.285 kb on + strandat 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.647 kb on - strand, within MPMX19_05031at 518.710 kb on + strand, within MPMX19_05031at 518.710 kb on + strand, within MPMX19_05031at 518.711 kb on - strand, within MPMX19_05031at 518.711 kb on - strand, within MPMX19_05031at 519.073 kb on + strand, within MPMX19_05031at 519.073 kb on + strand, within MPMX19_05031at 519.073 kb on + strand, within MPMX19_05031at 519.073 kb on + strand, within MPMX19_05031at 519.074 kb on - strand, within MPMX19_05031

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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516,434 + MPMX19_05029 0.59 -0.4
516,434 + MPMX19_05029 0.59 -0.8
516,434 + MPMX19_05029 0.59 +0.1
516,434 + MPMX19_05029 0.59 -0.9
516,434 + MPMX19_05029 0.59 +0.8
516,434 + MPMX19_05029 0.59 -0.5
516,435 - MPMX19_05029 0.60 +0.2
516,464 + MPMX19_05029 0.61 +0.2
516,464 + MPMX19_05029 0.61 +0.2
516,464 + MPMX19_05029 0.61 +0.2
516,464 + MPMX19_05029 0.61 -1.9
516,464 + MPMX19_05029 0.61 -1.1
516,464 + MPMX19_05029 0.61 +1.1
516,465 - MPMX19_05029 0.61 +0.5
516,465 - MPMX19_05029 0.61 -0.7
516,465 - MPMX19_05029 0.61 -0.8
516,465 - MPMX19_05029 0.61 -0.0
516,465 - MPMX19_05029 0.61 +0.2
516,465 - MPMX19_05029 0.61 -0.1
516,521 + MPMX19_05029 0.63 -0.5
516,521 + MPMX19_05029 0.63 -0.5
516,521 + MPMX19_05029 0.63 -1.1
516,521 + MPMX19_05029 0.63 -2.0
516,521 + MPMX19_05029 0.63 -0.4
516,522 - MPMX19_05029 0.63 -0.5
516,522 - MPMX19_05029 0.63 +0.5
516,522 - MPMX19_05029 0.63 -0.7
516,655 + MPMX19_05029 0.69 +0.5
516,655 + MPMX19_05029 0.69 -0.0
516,655 + MPMX19_05029 0.69 +0.5
516,812 + MPMX19_05029 0.75 -1.0
516,812 + MPMX19_05029 0.75 -2.5
516,812 + MPMX19_05029 0.75 -2.3
516,812 + MPMX19_05029 0.75 -1.0
516,812 + MPMX19_05029 0.75 -0.5
516,812 + MPMX19_05029 0.75 -1.4
516,812 + MPMX19_05029 0.75 -0.7
516,813 - MPMX19_05029 0.75 -0.3
516,813 - MPMX19_05029 0.75 +0.0
516,813 - MPMX19_05029 0.75 +1.1
516,813 - MPMX19_05029 0.75 -0.2
516,813 - MPMX19_05029 0.75 -0.2
516,813 - MPMX19_05029 0.75 +2.4
516,813 - MPMX19_05029 0.75 -0.1
516,813 - MPMX19_05029 0.75 -1.7
516,813 - MPMX19_05029 0.75 -1.2
516,813 - MPMX19_05029 0.75 -1.4
516,813 - MPMX19_05029 0.75 -1.1
516,813 - MPMX19_05029 0.75 -2.0
516,813 - MPMX19_05029 0.75 -0.6
516,813 - MPMX19_05029 0.75 -0.7
516,813 - MPMX19_05029 0.75 -3.0
516,848 + MPMX19_05029 0.77 +0.4
516,848 + MPMX19_05029 0.77 +0.8
516,848 + MPMX19_05029 0.77 +2.2
516,848 + MPMX19_05029 0.77 +0.8
516,848 + MPMX19_05029 0.77 +0.4
516,848 + MPMX19_05029 0.77 -1.0
516,848 + MPMX19_05029 0.77 +0.5
516,848 + MPMX19_05029 0.77 -1.5
516,848 + MPMX19_05029 0.77 +0.0
516,848 + MPMX19_05029 0.77 -2.0
516,849 - MPMX19_05029 0.77 -1.2
516,849 - MPMX19_05029 0.77 -0.5
516,849 - MPMX19_05029 0.77 -1.2
516,902 + MPMX19_05029 0.79 -0.9
516,902 + MPMX19_05029 0.79 -2.1
516,902 + MPMX19_05029 0.79 -0.5
516,902 + MPMX19_05029 0.79 +0.6
516,902 + MPMX19_05029 0.79 -1.4
516,902 + MPMX19_05029 0.79 -1.4
516,902 + MPMX19_05029 0.79 -2.8
516,903 - MPMX19_05029 0.79 -0.6
516,903 - MPMX19_05029 0.79 -0.7
516,903 - MPMX19_05029 0.79 -0.4
516,903 - MPMX19_05029 0.79 +0.5
516,903 - MPMX19_05029 0.79 -0.2
516,903 - MPMX19_05029 0.79 +0.1
516,905 + MPMX19_05029 0.79 +0.2
516,905 + MPMX19_05029 0.79 +0.2
516,906 - MPMX19_05029 0.79 +0.4
516,906 - MPMX19_05029 0.79 +0.7
516,915 - MPMX19_05029 0.80 +0.4
516,962 + MPMX19_05029 0.82 -2.3
516,962 + MPMX19_05029 0.82 +2.5
516,962 + MPMX19_05029 0.82 -0.2
516,962 + MPMX19_05029 0.82 -0.5
516,962 + MPMX19_05029 0.82 -0.6
516,962 + MPMX19_05029 0.82 -1.3
516,962 + MPMX19_05029 0.82 +0.2
516,962 + MPMX19_05029 0.82 +1.0
516,962 + MPMX19_05029 0.82 +0.8
516,962 + MPMX19_05029 0.82 +1.0
516,962 + MPMX19_05029 0.82 +1.0
516,963 - MPMX19_05029 0.82 +1.2
516,963 - MPMX19_05029 0.82 +0.4
516,963 - MPMX19_05029 0.82 -2.4
516,963 - MPMX19_05029 0.82 +0.1
516,963 - MPMX19_05029 0.82 -0.8
516,963 - MPMX19_05029 0.82 -0.2
516,963 - MPMX19_05029 0.82 +0.3
516,963 - MPMX19_05029 0.82 +0.2
516,963 - MPMX19_05029 0.82 -0.8
516,963 - MPMX19_05029 0.82 -1.5
516,974 - MPMX19_05029 0.82 -1.5
517,130 + MPMX19_05029 0.89 +0.2
517,130 + MPMX19_05029 0.89 +0.9
517,130 + MPMX19_05029 0.89 +1.2
517,130 + MPMX19_05029 0.89 -1.5
517,130 + MPMX19_05029 0.89 -0.4
517,130 + MPMX19_05029 0.89 +0.2
517,131 - MPMX19_05029 0.89 -0.2
517,131 - MPMX19_05029 0.89 +0.6
517,131 - MPMX19_05029 0.89 -1.9
517,131 - MPMX19_05029 0.89 -0.5
517,131 - MPMX19_05029 0.89 -1.4
517,131 - MPMX19_05029 0.89 +1.5
517,131 - MPMX19_05029 0.89 -1.2
517,131 - MPMX19_05029 0.89 -0.0
517,131 - MPMX19_05029 0.89 -0.8
517,131 - MPMX19_05029 0.89 +1.3
517,131 - MPMX19_05029 0.89 +0.6
517,131 - MPMX19_05029 0.89 -1.4
517,901 + MPMX19_05030 0.56 -0.3
517,901 + MPMX19_05030 0.56 -0.6
517,902 - MPMX19_05030 0.57 -0.1
517,956 + MPMX19_05030 0.63 -0.1
517,956 + MPMX19_05030 0.63 +0.9
517,957 - MPMX19_05030 0.63 +1.8
517,957 - MPMX19_05030 0.63 -1.3
518,031 + MPMX19_05030 0.72 -1.0
518,031 + MPMX19_05030 0.72 -1.7
518,031 + MPMX19_05030 0.72 -0.5
518,031 + MPMX19_05030 0.72 -0.6
518,031 + MPMX19_05030 0.72 -0.4
518,031 + MPMX19_05030 0.72 +1.3
518,031 + MPMX19_05030 0.72 +1.5
518,031 + MPMX19_05030 0.72 +0.9
518,031 + MPMX19_05030 0.72 +0.7
518,032 - MPMX19_05030 0.72 +1.1
518,032 - MPMX19_05030 0.72 -1.1
518,032 - MPMX19_05030 0.72 -2.9
518,032 - MPMX19_05030 0.72 -1.5
518,032 - MPMX19_05030 0.72 +2.8
518,285 + -1.8
518,285 + -1.1
518,285 + -1.8
518,285 + -1.2
518,566 + MPMX19_05031 0.24 -0.2
518,566 + MPMX19_05031 0.24 -0.2
518,566 + MPMX19_05031 0.24 +0.3
518,566 + MPMX19_05031 0.24 +2.1
518,566 + MPMX19_05031 0.24 +1.2
518,566 + MPMX19_05031 0.24 +0.8
518,566 + MPMX19_05031 0.24 -2.3
518,566 + MPMX19_05031 0.24 -0.0
518,566 + MPMX19_05031 0.24 -0.5
518,566 + MPMX19_05031 0.24 +0.8
518,567 - MPMX19_05031 0.24 +0.1
518,567 - MPMX19_05031 0.24 -2.2
518,567 - MPMX19_05031 0.24 +0.2
518,567 - MPMX19_05031 0.24 -1.4
518,567 - MPMX19_05031 0.24 -1.2
518,567 - MPMX19_05031 0.24 -0.9
518,567 - MPMX19_05031 0.24 -0.1
518,567 - MPMX19_05031 0.24 +0.8
518,567 - MPMX19_05031 0.24 -0.2
518,567 - MPMX19_05031 0.24 -0.9
518,567 - MPMX19_05031 0.24 -0.7
518,567 - MPMX19_05031 0.24 -0.4
518,647 - MPMX19_05031 0.33 -0.9
518,710 + MPMX19_05031 0.41 +0.6
518,710 + MPMX19_05031 0.41 +0.3
518,711 - MPMX19_05031 0.41 -0.4
518,711 - MPMX19_05031 0.41 +0.6
519,073 + MPMX19_05031 0.84 -1.2
519,073 + MPMX19_05031 0.84 +1.3
519,073 + MPMX19_05031 0.84 +0.1
519,073 + MPMX19_05031 0.84 -0.1
519,074 - MPMX19_05031 0.84 -0.0

Or see this region's nucleotide sequence