Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05019

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05018 and MPMX19_05019 are separated by 230 nucleotidesMPMX19_05019 and MPMX19_05020 are separated by 11 nucleotides MPMX19_05018: MPMX19_05018 - HTH-type transcriptional regulator RamB, at 499,788 to 501,236 _05018 MPMX19_05019: MPMX19_05019 - Propionyl-CoA carboxylase beta chain, at 501,467 to 502,999 _05019 MPMX19_05020: MPMX19_05020 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 503,011 to 505,011 _05020 Position (kb) 501 502 503Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.672 kb on - strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.770 kb on + strand, within MPMX19_05018at 500.771 kb on - strand, within MPMX19_05018at 500.779 kb on + strand, within MPMX19_05018at 500.779 kb on + strand, within MPMX19_05018at 500.798 kb on - strand, within MPMX19_05018at 500.887 kb on + strand, within MPMX19_05018at 500.887 kb on + strand, within MPMX19_05018at 500.888 kb on - strand, within MPMX19_05018at 500.888 kb on - strand, within MPMX19_05018at 500.888 kb on - strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.007 kb on - strand, within MPMX19_05018at 501.007 kb on - strand, within MPMX19_05018at 501.007 kb on - strand, within MPMX19_05018at 501.134 kb on - strandat 501.211 kb on + strandat 501.211 kb on + strandat 501.240 kb on + strandat 501.241 kb on - strandat 501.242 kb on + strandat 501.292 kb on + strandat 501.381 kb on + strandat 501.381 kb on + strandat 501.452 kb on + strandat 501.452 kb on + strandat 501.453 kb on - strandat 501.453 kb on - strandat 501.453 kb on - strandat 501.983 kb on + strand, within MPMX19_05019at 501.983 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.307 kb on + strand, within MPMX19_05019at 502.374 kb on - strand, within MPMX19_05019at 502.374 kb on - strand, within MPMX19_05019at 502.580 kb on + strand, within MPMX19_05019at 502.580 kb on + strand, within MPMX19_05019at 502.580 kb on + strand, within MPMX19_05019at 502.580 kb on + strand, within MPMX19_05019at 502.581 kb on - strand, within MPMX19_05019at 502.682 kb on + strand, within MPMX19_05019at 502.724 kb on + strand, within MPMX19_05019at 502.724 kb on + strand, within MPMX19_05019at 502.724 kb on + strand, within MPMX19_05019at 502.724 kb on + strand, within MPMX19_05019at 502.724 kb on + strand, within MPMX19_05019at 502.725 kb on - strand, within MPMX19_05019at 502.725 kb on - strand, within MPMX19_05019at 502.725 kb on - strand, within MPMX19_05019at 502.725 kb on - strand, within MPMX19_05019at 502.835 kb on + strand, within MPMX19_05019at 502.835 kb on + strand, within MPMX19_05019at 503.104 kb on + strandat 503.104 kb on + strandat 503.188 kb on + strandat 503.188 kb on + strandat 503.188 kb on + strandat 503.188 kb on + strandat 503.188 kb on + strandat 503.188 kb on + strandat 503.188 kb on + strandat 503.189 kb on - strandat 503.189 kb on - strandat 503.189 kb on - strandat 503.411 kb on - strand, within MPMX19_05020at 503.614 kb on + strand, within MPMX19_05020at 503.614 kb on + strand, within MPMX19_05020at 503.614 kb on + strand, within MPMX19_05020at 503.614 kb on + strand, within MPMX19_05020at 503.614 kb on + strand, within MPMX19_05020at 503.614 kb on + strand, within MPMX19_05020at 503.614 kb on + strand, within MPMX19_05020at 503.614 kb on + strand, within MPMX19_05020at 503.614 kb on + strand, within MPMX19_05020at 503.615 kb on - strand, within MPMX19_05020at 503.615 kb on - strand, within MPMX19_05020at 503.677 kb on + strand, within MPMX19_05020at 503.678 kb on - strand, within MPMX19_05020at 503.678 kb on - strand, within MPMX19_05020at 503.678 kb on - strand, within MPMX19_05020at 503.678 kb on - strand, within MPMX19_05020at 503.812 kb on + strand, within MPMX19_05020at 503.812 kb on + strand, within MPMX19_05020at 503.812 kb on + strand, within MPMX19_05020at 503.812 kb on + strand, within MPMX19_05020at 503.812 kb on + strand, within MPMX19_05020at 503.812 kb on + strand, within MPMX19_05020at 503.812 kb on + strand, within MPMX19_05020at 503.812 kb on + strand, within MPMX19_05020at 503.813 kb on - strand, within MPMX19_05020at 503.813 kb on - strand, within MPMX19_05020at 503.813 kb on - strand, within MPMX19_05020at 503.813 kb on - strand, within MPMX19_05020at 503.813 kb on - strand, within MPMX19_05020at 503.813 kb on - strand, within MPMX19_05020at 503.813 kb on - strand, within MPMX19_05020at 503.813 kb on - strand, within MPMX19_05020at 503.813 kb on - strand, within MPMX19_05020at 503.863 kb on + strand, within MPMX19_05020at 503.863 kb on + strand, within MPMX19_05020at 503.863 kb on + strand, within MPMX19_05020at 503.863 kb on + strand, within MPMX19_05020at 503.864 kb on - strand, within MPMX19_05020at 503.864 kb on - strand, within MPMX19_05020

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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500,599 + MPMX19_05018 0.56 -0.2
500,599 + MPMX19_05018 0.56 +0.0
500,599 + MPMX19_05018 0.56 +0.1
500,599 + MPMX19_05018 0.56 +0.8
500,599 + MPMX19_05018 0.56 +0.3
500,599 + MPMX19_05018 0.56 -0.4
500,599 + MPMX19_05018 0.56 +0.8
500,599 + MPMX19_05018 0.56 +1.8
500,599 + MPMX19_05018 0.56 +1.8
500,599 + MPMX19_05018 0.56 -1.2
500,600 - MPMX19_05018 0.56 +1.4
500,600 - MPMX19_05018 0.56 +0.4
500,600 - MPMX19_05018 0.56 -1.5
500,600 - MPMX19_05018 0.56 -0.0
500,600 - MPMX19_05018 0.56 -0.9
500,600 - MPMX19_05018 0.56 +1.8
500,600 - MPMX19_05018 0.56 -0.7
500,600 - MPMX19_05018 0.56 -1.5
500,600 - MPMX19_05018 0.56 -0.5
500,600 - MPMX19_05018 0.56 +1.2
500,600 - MPMX19_05018 0.56 -0.5
500,672 - MPMX19_05018 0.61 +1.0
500,758 + MPMX19_05018 0.67 -0.5
500,758 + MPMX19_05018 0.67 +1.5
500,758 + MPMX19_05018 0.67 -1.8
500,758 + MPMX19_05018 0.67 -1.4
500,758 + MPMX19_05018 0.67 +0.0
500,758 + MPMX19_05018 0.67 +2.2
500,758 + MPMX19_05018 0.67 -0.2
500,758 + MPMX19_05018 0.67 -0.2
500,758 + MPMX19_05018 0.67 +0.8
500,758 + MPMX19_05018 0.67 -0.8
500,758 + MPMX19_05018 0.67 -0.1
500,758 + MPMX19_05018 0.67 -0.1
500,758 + MPMX19_05018 0.67 +0.8
500,758 + MPMX19_05018 0.67 +1.0
500,758 + MPMX19_05018 0.67 -1.0
500,759 - MPMX19_05018 0.67 -0.4
500,759 - MPMX19_05018 0.67 +0.2
500,759 - MPMX19_05018 0.67 +1.0
500,759 - MPMX19_05018 0.67 +0.5
500,759 - MPMX19_05018 0.67 +0.2
500,759 - MPMX19_05018 0.67 +0.2
500,759 - MPMX19_05018 0.67 +1.2
500,759 - MPMX19_05018 0.67 -0.2
500,759 - MPMX19_05018 0.67 -0.3
500,759 - MPMX19_05018 0.67 +1.0
500,759 - MPMX19_05018 0.67 -0.9
500,770 + MPMX19_05018 0.68 -1.2
500,771 - MPMX19_05018 0.68 -0.8
500,779 + MPMX19_05018 0.68 -0.9
500,779 + MPMX19_05018 0.68 -0.2
500,798 - MPMX19_05018 0.70 +0.4
500,887 + MPMX19_05018 0.76 -0.2
500,887 + MPMX19_05018 0.76 +1.2
500,888 - MPMX19_05018 0.76 +0.9
500,888 - MPMX19_05018 0.76 +0.4
500,888 - MPMX19_05018 0.76 -1.1
501,006 + MPMX19_05018 0.84 +0.8
501,006 + MPMX19_05018 0.84 -1.8
501,006 + MPMX19_05018 0.84 +1.0
501,006 + MPMX19_05018 0.84 +0.3
501,006 + MPMX19_05018 0.84 +1.0
501,006 + MPMX19_05018 0.84 +0.5
501,007 - MPMX19_05018 0.84 +0.4
501,007 - MPMX19_05018 0.84 -0.6
501,007 - MPMX19_05018 0.84 +1.2
501,134 - -0.5
501,211 + +1.4
501,211 + -0.1
501,240 + -1.3
501,241 - -0.2
501,242 + -0.2
501,292 + +1.2
501,381 + -0.3
501,381 + -0.0
501,452 + -0.6
501,452 + -1.2
501,453 - -0.2
501,453 - -0.2
501,453 - -0.2
501,983 + MPMX19_05019 0.34 +0.8
501,983 + MPMX19_05019 0.34 +1.6
502,031 + MPMX19_05019 0.37 -1.9
502,031 + MPMX19_05019 0.37 -2.0
502,031 + MPMX19_05019 0.37 -0.9
502,031 + MPMX19_05019 0.37 -0.5
502,031 + MPMX19_05019 0.37 +2.4
502,031 + MPMX19_05019 0.37 +0.0
502,031 + MPMX19_05019 0.37 -0.2
502,031 + MPMX19_05019 0.37 -1.4
502,031 + MPMX19_05019 0.37 -0.3
502,031 + MPMX19_05019 0.37 -2.2
502,031 + MPMX19_05019 0.37 -0.8
502,031 + MPMX19_05019 0.37 -0.8
502,031 + MPMX19_05019 0.37 -2.5
502,031 + MPMX19_05019 0.37 +1.1
502,031 + MPMX19_05019 0.37 -0.0
502,031 + MPMX19_05019 0.37 -1.2
502,031 + MPMX19_05019 0.37 +1.0
502,031 + MPMX19_05019 0.37 +0.2
502,031 + MPMX19_05019 0.37 +1.0
502,031 + MPMX19_05019 0.37 -1.7
502,031 + MPMX19_05019 0.37 -0.8
502,031 + MPMX19_05019 0.37 -0.5
502,032 - MPMX19_05019 0.37 +0.5
502,032 - MPMX19_05019 0.37 -0.7
502,032 - MPMX19_05019 0.37 -0.0
502,032 - MPMX19_05019 0.37 -0.7
502,032 - MPMX19_05019 0.37 -0.0
502,032 - MPMX19_05019 0.37 -0.4
502,032 - MPMX19_05019 0.37 -0.2
502,032 - MPMX19_05019 0.37 +1.8
502,032 - MPMX19_05019 0.37 -1.2
502,032 - MPMX19_05019 0.37 -0.4
502,032 - MPMX19_05019 0.37 +0.2
502,032 - MPMX19_05019 0.37 -0.8
502,307 + MPMX19_05019 0.55 -1.4
502,374 - MPMX19_05019 0.59 +0.8
502,374 - MPMX19_05019 0.59 -1.2
502,580 + MPMX19_05019 0.73 +1.5
502,580 + MPMX19_05019 0.73 +0.9
502,580 + MPMX19_05019 0.73 -0.5
502,580 + MPMX19_05019 0.73 +0.5
502,581 - MPMX19_05019 0.73 -0.4
502,682 + MPMX19_05019 0.79 +0.2
502,724 + MPMX19_05019 0.82 -0.5
502,724 + MPMX19_05019 0.82 -0.0
502,724 + MPMX19_05019 0.82 -0.3
502,724 + MPMX19_05019 0.82 +0.9
502,724 + MPMX19_05019 0.82 +0.2
502,725 - MPMX19_05019 0.82 -1.9
502,725 - MPMX19_05019 0.82 -0.0
502,725 - MPMX19_05019 0.82 +0.2
502,725 - MPMX19_05019 0.82 -0.2
502,835 + MPMX19_05019 0.89 -0.5
502,835 + MPMX19_05019 0.89 +0.6
503,104 + +1.0
503,104 + -1.5
503,188 + +0.2
503,188 + -0.8
503,188 + -0.2
503,188 + -0.5
503,188 + +2.3
503,188 + -0.5
503,188 + +0.2
503,189 - +0.8
503,189 - +0.1
503,189 - -1.9
503,411 - MPMX19_05020 0.20 -0.6
503,614 + MPMX19_05020 0.30 -2.9
503,614 + MPMX19_05020 0.30 +0.6
503,614 + MPMX19_05020 0.30 -0.2
503,614 + MPMX19_05020 0.30 +0.1
503,614 + MPMX19_05020 0.30 -0.8
503,614 + MPMX19_05020 0.30 -1.0
503,614 + MPMX19_05020 0.30 +0.3
503,614 + MPMX19_05020 0.30 +1.2
503,614 + MPMX19_05020 0.30 +1.0
503,615 - MPMX19_05020 0.30 -3.0
503,615 - MPMX19_05020 0.30 -0.4
503,677 + MPMX19_05020 0.33 +0.2
503,678 - MPMX19_05020 0.33 +0.2
503,678 - MPMX19_05020 0.33 +0.8
503,678 - MPMX19_05020 0.33 +0.2
503,678 - MPMX19_05020 0.33 +1.5
503,812 + MPMX19_05020 0.40 +0.8
503,812 + MPMX19_05020 0.40 +0.4
503,812 + MPMX19_05020 0.40 +0.4
503,812 + MPMX19_05020 0.40 +0.6
503,812 + MPMX19_05020 0.40 +0.0
503,812 + MPMX19_05020 0.40 +0.8
503,812 + MPMX19_05020 0.40 +1.5
503,812 + MPMX19_05020 0.40 +0.6
503,813 - MPMX19_05020 0.40 -1.0
503,813 - MPMX19_05020 0.40 -1.2
503,813 - MPMX19_05020 0.40 -0.3
503,813 - MPMX19_05020 0.40 +0.8
503,813 - MPMX19_05020 0.40 +0.8
503,813 - MPMX19_05020 0.40 +0.2
503,813 - MPMX19_05020 0.40 +0.8
503,813 - MPMX19_05020 0.40 -1.5
503,813 - MPMX19_05020 0.40 +0.9
503,863 + MPMX19_05020 0.43 +0.0
503,863 + MPMX19_05020 0.43 -1.5
503,863 + MPMX19_05020 0.43 -1.2
503,863 + MPMX19_05020 0.43 +0.3
503,864 - MPMX19_05020 0.43 +0.8
503,864 - MPMX19_05020 0.43 -0.9

Or see this region's nucleotide sequence