Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05018 and MPMX19_05019 are separated by 230 nucleotides MPMX19_05019 and MPMX19_05020 are separated by 11 nucleotides
MPMX19_05018: MPMX19_05018 - HTH-type transcriptional regulator RamB, at 499,788 to 501,236
_05018
MPMX19_05019: MPMX19_05019 - Propionyl-CoA carboxylase beta chain, at 501,467 to 502,999
_05019
MPMX19_05020: MPMX19_05020 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 503,011 to 505,011
_05020
Position (kb)
501
502
503 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.672 kb on - strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.770 kb on + strand, within MPMX19_05018 at 500.771 kb on - strand, within MPMX19_05018 at 500.779 kb on + strand, within MPMX19_05018 at 500.779 kb on + strand, within MPMX19_05018 at 500.798 kb on - strand, within MPMX19_05018 at 500.887 kb on + strand, within MPMX19_05018 at 500.887 kb on + strand, within MPMX19_05018 at 500.888 kb on - strand, within MPMX19_05018 at 500.888 kb on - strand, within MPMX19_05018 at 500.888 kb on - strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.007 kb on - strand, within MPMX19_05018 at 501.007 kb on - strand, within MPMX19_05018 at 501.007 kb on - strand, within MPMX19_05018 at 501.134 kb on - strand at 501.211 kb on + strand at 501.211 kb on + strand at 501.240 kb on + strand at 501.241 kb on - strand at 501.242 kb on + strand at 501.292 kb on + strand at 501.381 kb on + strand at 501.381 kb on + strand at 501.452 kb on + strand at 501.452 kb on + strand at 501.453 kb on - strand at 501.453 kb on - strand at 501.453 kb on - strand at 501.983 kb on + strand, within MPMX19_05019 at 501.983 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.307 kb on + strand, within MPMX19_05019 at 502.374 kb on - strand, within MPMX19_05019 at 502.374 kb on - strand, within MPMX19_05019 at 502.580 kb on + strand, within MPMX19_05019 at 502.580 kb on + strand, within MPMX19_05019 at 502.580 kb on + strand, within MPMX19_05019 at 502.580 kb on + strand, within MPMX19_05019 at 502.581 kb on - strand, within MPMX19_05019 at 502.682 kb on + strand, within MPMX19_05019 at 502.724 kb on + strand, within MPMX19_05019 at 502.724 kb on + strand, within MPMX19_05019 at 502.724 kb on + strand, within MPMX19_05019 at 502.724 kb on + strand, within MPMX19_05019 at 502.724 kb on + strand, within MPMX19_05019 at 502.725 kb on - strand, within MPMX19_05019 at 502.725 kb on - strand, within MPMX19_05019 at 502.725 kb on - strand, within MPMX19_05019 at 502.725 kb on - strand, within MPMX19_05019 at 502.835 kb on + strand, within MPMX19_05019 at 502.835 kb on + strand, within MPMX19_05019 at 503.104 kb on + strand at 503.104 kb on + strand at 503.188 kb on + strand at 503.188 kb on + strand at 503.188 kb on + strand at 503.188 kb on + strand at 503.188 kb on + strand at 503.188 kb on + strand at 503.188 kb on + strand at 503.189 kb on - strand at 503.189 kb on - strand at 503.189 kb on - strand at 503.411 kb on - strand, within MPMX19_05020 at 503.614 kb on + strand, within MPMX19_05020 at 503.614 kb on + strand, within MPMX19_05020 at 503.614 kb on + strand, within MPMX19_05020 at 503.614 kb on + strand, within MPMX19_05020 at 503.614 kb on + strand, within MPMX19_05020 at 503.614 kb on + strand, within MPMX19_05020 at 503.614 kb on + strand, within MPMX19_05020 at 503.614 kb on + strand, within MPMX19_05020 at 503.614 kb on + strand, within MPMX19_05020 at 503.615 kb on - strand, within MPMX19_05020 at 503.615 kb on - strand, within MPMX19_05020 at 503.677 kb on + strand, within MPMX19_05020 at 503.678 kb on - strand, within MPMX19_05020 at 503.678 kb on - strand, within MPMX19_05020 at 503.678 kb on - strand, within MPMX19_05020 at 503.678 kb on - strand, within MPMX19_05020 at 503.812 kb on + strand, within MPMX19_05020 at 503.812 kb on + strand, within MPMX19_05020 at 503.812 kb on + strand, within MPMX19_05020 at 503.812 kb on + strand, within MPMX19_05020 at 503.812 kb on + strand, within MPMX19_05020 at 503.812 kb on + strand, within MPMX19_05020 at 503.812 kb on + strand, within MPMX19_05020 at 503.812 kb on + strand, within MPMX19_05020 at 503.813 kb on - strand, within MPMX19_05020 at 503.813 kb on - strand, within MPMX19_05020 at 503.813 kb on - strand, within MPMX19_05020 at 503.813 kb on - strand, within MPMX19_05020 at 503.813 kb on - strand, within MPMX19_05020 at 503.813 kb on - strand, within MPMX19_05020 at 503.813 kb on - strand, within MPMX19_05020 at 503.813 kb on - strand, within MPMX19_05020 at 503.813 kb on - strand, within MPMX19_05020 at 503.863 kb on + strand, within MPMX19_05020 at 503.863 kb on + strand, within MPMX19_05020 at 503.863 kb on + strand, within MPMX19_05020 at 503.863 kb on + strand, within MPMX19_05020 at 503.864 kb on - strand, within MPMX19_05020 at 503.864 kb on - strand, within MPMX19_05020
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 500,599 + MPMX19_05018 0.56 -0.2 500,599 + MPMX19_05018 0.56 +0.0 500,599 + MPMX19_05018 0.56 +0.1 500,599 + MPMX19_05018 0.56 +0.8 500,599 + MPMX19_05018 0.56 +0.3 500,599 + MPMX19_05018 0.56 -0.4 500,599 + MPMX19_05018 0.56 +0.8 500,599 + MPMX19_05018 0.56 +1.8 500,599 + MPMX19_05018 0.56 +1.8 500,599 + MPMX19_05018 0.56 -1.2 500,600 - MPMX19_05018 0.56 +1.4 500,600 - MPMX19_05018 0.56 +0.4 500,600 - MPMX19_05018 0.56 -1.5 500,600 - MPMX19_05018 0.56 -0.0 500,600 - MPMX19_05018 0.56 -0.9 500,600 - MPMX19_05018 0.56 +1.8 500,600 - MPMX19_05018 0.56 -0.7 500,600 - MPMX19_05018 0.56 -1.5 500,600 - MPMX19_05018 0.56 -0.5 500,600 - MPMX19_05018 0.56 +1.2 500,600 - MPMX19_05018 0.56 -0.5 500,672 - MPMX19_05018 0.61 +1.0 500,758 + MPMX19_05018 0.67 -0.5 500,758 + MPMX19_05018 0.67 +1.5 500,758 + MPMX19_05018 0.67 -1.8 500,758 + MPMX19_05018 0.67 -1.4 500,758 + MPMX19_05018 0.67 +0.0 500,758 + MPMX19_05018 0.67 +2.2 500,758 + MPMX19_05018 0.67 -0.2 500,758 + MPMX19_05018 0.67 -0.2 500,758 + MPMX19_05018 0.67 +0.8 500,758 + MPMX19_05018 0.67 -0.8 500,758 + MPMX19_05018 0.67 -0.1 500,758 + MPMX19_05018 0.67 -0.1 500,758 + MPMX19_05018 0.67 +0.8 500,758 + MPMX19_05018 0.67 +1.0 500,758 + MPMX19_05018 0.67 -1.0 500,759 - MPMX19_05018 0.67 -0.4 500,759 - MPMX19_05018 0.67 +0.2 500,759 - MPMX19_05018 0.67 +1.0 500,759 - MPMX19_05018 0.67 +0.5 500,759 - MPMX19_05018 0.67 +0.2 500,759 - MPMX19_05018 0.67 +0.2 500,759 - MPMX19_05018 0.67 +1.2 500,759 - MPMX19_05018 0.67 -0.2 500,759 - MPMX19_05018 0.67 -0.3 500,759 - MPMX19_05018 0.67 +1.0 500,759 - MPMX19_05018 0.67 -0.9 500,770 + MPMX19_05018 0.68 -1.2 500,771 - MPMX19_05018 0.68 -0.8 500,779 + MPMX19_05018 0.68 -0.9 500,779 + MPMX19_05018 0.68 -0.2 500,798 - MPMX19_05018 0.70 +0.4 500,887 + MPMX19_05018 0.76 -0.2 500,887 + MPMX19_05018 0.76 +1.2 500,888 - MPMX19_05018 0.76 +0.9 500,888 - MPMX19_05018 0.76 +0.4 500,888 - MPMX19_05018 0.76 -1.1 501,006 + MPMX19_05018 0.84 +0.8 501,006 + MPMX19_05018 0.84 -1.8 501,006 + MPMX19_05018 0.84 +1.0 501,006 + MPMX19_05018 0.84 +0.3 501,006 + MPMX19_05018 0.84 +1.0 501,006 + MPMX19_05018 0.84 +0.5 501,007 - MPMX19_05018 0.84 +0.4 501,007 - MPMX19_05018 0.84 -0.6 501,007 - MPMX19_05018 0.84 +1.2 501,134 - -0.5 501,211 + +1.4 501,211 + -0.1 501,240 + -1.3 501,241 - -0.2 501,242 + -0.2 501,292 + +1.2 501,381 + -0.3 501,381 + -0.0 501,452 + -0.6 501,452 + -1.2 501,453 - -0.2 501,453 - -0.2 501,453 - -0.2 501,983 + MPMX19_05019 0.34 +0.8 501,983 + MPMX19_05019 0.34 +1.6 502,031 + MPMX19_05019 0.37 -1.9 502,031 + MPMX19_05019 0.37 -2.0 502,031 + MPMX19_05019 0.37 -0.9 502,031 + MPMX19_05019 0.37 -0.5 502,031 + MPMX19_05019 0.37 +2.4 502,031 + MPMX19_05019 0.37 +0.0 502,031 + MPMX19_05019 0.37 -0.2 502,031 + MPMX19_05019 0.37 -1.4 502,031 + MPMX19_05019 0.37 -0.3 502,031 + MPMX19_05019 0.37 -2.2 502,031 + MPMX19_05019 0.37 -0.8 502,031 + MPMX19_05019 0.37 -0.8 502,031 + MPMX19_05019 0.37 -2.5 502,031 + MPMX19_05019 0.37 +1.1 502,031 + MPMX19_05019 0.37 -0.0 502,031 + MPMX19_05019 0.37 -1.2 502,031 + MPMX19_05019 0.37 +1.0 502,031 + MPMX19_05019 0.37 +0.2 502,031 + MPMX19_05019 0.37 +1.0 502,031 + MPMX19_05019 0.37 -1.7 502,031 + MPMX19_05019 0.37 -0.8 502,031 + MPMX19_05019 0.37 -0.5 502,032 - MPMX19_05019 0.37 +0.5 502,032 - MPMX19_05019 0.37 -0.7 502,032 - MPMX19_05019 0.37 -0.0 502,032 - MPMX19_05019 0.37 -0.7 502,032 - MPMX19_05019 0.37 -0.0 502,032 - MPMX19_05019 0.37 -0.4 502,032 - MPMX19_05019 0.37 -0.2 502,032 - MPMX19_05019 0.37 +1.8 502,032 - MPMX19_05019 0.37 -1.2 502,032 - MPMX19_05019 0.37 -0.4 502,032 - MPMX19_05019 0.37 +0.2 502,032 - MPMX19_05019 0.37 -0.8 502,307 + MPMX19_05019 0.55 -1.4 502,374 - MPMX19_05019 0.59 +0.8 502,374 - MPMX19_05019 0.59 -1.2 502,580 + MPMX19_05019 0.73 +1.5 502,580 + MPMX19_05019 0.73 +0.9 502,580 + MPMX19_05019 0.73 -0.5 502,580 + MPMX19_05019 0.73 +0.5 502,581 - MPMX19_05019 0.73 -0.4 502,682 + MPMX19_05019 0.79 +0.2 502,724 + MPMX19_05019 0.82 -0.5 502,724 + MPMX19_05019 0.82 -0.0 502,724 + MPMX19_05019 0.82 -0.3 502,724 + MPMX19_05019 0.82 +0.9 502,724 + MPMX19_05019 0.82 +0.2 502,725 - MPMX19_05019 0.82 -1.9 502,725 - MPMX19_05019 0.82 -0.0 502,725 - MPMX19_05019 0.82 +0.2 502,725 - MPMX19_05019 0.82 -0.2 502,835 + MPMX19_05019 0.89 -0.5 502,835 + MPMX19_05019 0.89 +0.6 503,104 + +1.0 503,104 + -1.5 503,188 + +0.2 503,188 + -0.8 503,188 + -0.2 503,188 + -0.5 503,188 + +2.3 503,188 + -0.5 503,188 + +0.2 503,189 - +0.8 503,189 - +0.1 503,189 - -1.9 503,411 - MPMX19_05020 0.20 -0.6 503,614 + MPMX19_05020 0.30 -2.9 503,614 + MPMX19_05020 0.30 +0.6 503,614 + MPMX19_05020 0.30 -0.2 503,614 + MPMX19_05020 0.30 +0.1 503,614 + MPMX19_05020 0.30 -0.8 503,614 + MPMX19_05020 0.30 -1.0 503,614 + MPMX19_05020 0.30 +0.3 503,614 + MPMX19_05020 0.30 +1.2 503,614 + MPMX19_05020 0.30 +1.0 503,615 - MPMX19_05020 0.30 -3.0 503,615 - MPMX19_05020 0.30 -0.4 503,677 + MPMX19_05020 0.33 +0.2 503,678 - MPMX19_05020 0.33 +0.2 503,678 - MPMX19_05020 0.33 +0.8 503,678 - MPMX19_05020 0.33 +0.2 503,678 - MPMX19_05020 0.33 +1.5 503,812 + MPMX19_05020 0.40 +0.8 503,812 + MPMX19_05020 0.40 +0.4 503,812 + MPMX19_05020 0.40 +0.4 503,812 + MPMX19_05020 0.40 +0.6 503,812 + MPMX19_05020 0.40 +0.0 503,812 + MPMX19_05020 0.40 +0.8 503,812 + MPMX19_05020 0.40 +1.5 503,812 + MPMX19_05020 0.40 +0.6 503,813 - MPMX19_05020 0.40 -1.0 503,813 - MPMX19_05020 0.40 -1.2 503,813 - MPMX19_05020 0.40 -0.3 503,813 - MPMX19_05020 0.40 +0.8 503,813 - MPMX19_05020 0.40 +0.8 503,813 - MPMX19_05020 0.40 +0.2 503,813 - MPMX19_05020 0.40 +0.8 503,813 - MPMX19_05020 0.40 -1.5 503,813 - MPMX19_05020 0.40 +0.9 503,863 + MPMX19_05020 0.43 +0.0 503,863 + MPMX19_05020 0.43 -1.5 503,863 + MPMX19_05020 0.43 -1.2 503,863 + MPMX19_05020 0.43 +0.3 503,864 - MPMX19_05020 0.43 +0.8 503,864 - MPMX19_05020 0.43 -0.9
Or see this region's nucleotide sequence