Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05018

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05017 and MPMX19_05018 overlap by 29 nucleotidesMPMX19_05018 and MPMX19_05019 are separated by 230 nucleotides MPMX19_05017: MPMX19_05017 - hypothetical protein, at 498,350 to 499,816 _05017 MPMX19_05018: MPMX19_05018 - HTH-type transcriptional regulator RamB, at 499,788 to 501,236 _05018 MPMX19_05019: MPMX19_05019 - Propionyl-CoA carboxylase beta chain, at 501,467 to 502,999 _05019 Position (kb) 499 500 501 502Strain fitness (log2 ratio) -2 -1 0 1 2at 499.007 kb on + strand, within MPMX19_05017at 499.007 kb on + strand, within MPMX19_05017at 499.344 kb on - strand, within MPMX19_05017at 499.371 kb on + strand, within MPMX19_05017at 499.371 kb on + strand, within MPMX19_05017at 499.371 kb on + strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.372 kb on - strand, within MPMX19_05017at 499.406 kb on + strand, within MPMX19_05017at 499.407 kb on - strand, within MPMX19_05017at 499.586 kb on + strand, within MPMX19_05017at 499.587 kb on - strand, within MPMX19_05017at 499.691 kb on + strandat 499.691 kb on + strandat 499.691 kb on + strandat 499.692 kb on - strandat 499.822 kb on + strandat 499.823 kb on - strandat 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.975 kb on + strand, within MPMX19_05018at 499.976 kb on - strand, within MPMX19_05018at 499.976 kb on - strand, within MPMX19_05018at 499.976 kb on - strand, within MPMX19_05018at 500.044 kb on + strand, within MPMX19_05018at 500.045 kb on - strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.084 kb on + strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.085 kb on - strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.086 kb on + strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.087 kb on - strand, within MPMX19_05018at 500.254 kb on + strand, within MPMX19_05018at 500.393 kb on - strand, within MPMX19_05018at 500.419 kb on + strand, within MPMX19_05018at 500.419 kb on + strand, within MPMX19_05018at 500.420 kb on - strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.599 kb on + strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.600 kb on - strand, within MPMX19_05018at 500.672 kb on - strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.758 kb on + strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.759 kb on - strand, within MPMX19_05018at 500.770 kb on + strand, within MPMX19_05018at 500.771 kb on - strand, within MPMX19_05018at 500.779 kb on + strand, within MPMX19_05018at 500.779 kb on + strand, within MPMX19_05018at 500.798 kb on - strand, within MPMX19_05018at 500.887 kb on + strand, within MPMX19_05018at 500.887 kb on + strand, within MPMX19_05018at 500.888 kb on - strand, within MPMX19_05018at 500.888 kb on - strand, within MPMX19_05018at 500.888 kb on - strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.006 kb on + strand, within MPMX19_05018at 501.007 kb on - strand, within MPMX19_05018at 501.007 kb on - strand, within MPMX19_05018at 501.007 kb on - strand, within MPMX19_05018at 501.134 kb on - strandat 501.211 kb on + strandat 501.211 kb on + strandat 501.240 kb on + strandat 501.241 kb on - strandat 501.242 kb on + strandat 501.292 kb on + strandat 501.381 kb on + strandat 501.381 kb on + strandat 501.452 kb on + strandat 501.452 kb on + strandat 501.453 kb on - strandat 501.453 kb on - strandat 501.453 kb on - strandat 501.983 kb on + strand, within MPMX19_05019at 501.983 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.031 kb on + strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019at 502.032 kb on - strand, within MPMX19_05019

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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499,007 + MPMX19_05017 0.45 -1.9
499,007 + MPMX19_05017 0.45 -0.8
499,344 - MPMX19_05017 0.68 +2.2
499,371 + MPMX19_05017 0.70 -0.4
499,371 + MPMX19_05017 0.70 -0.8
499,371 + MPMX19_05017 0.70 -0.0
499,372 - MPMX19_05017 0.70 +0.6
499,372 - MPMX19_05017 0.70 +0.4
499,372 - MPMX19_05017 0.70 -1.5
499,372 - MPMX19_05017 0.70 +0.2
499,372 - MPMX19_05017 0.70 -0.3
499,372 - MPMX19_05017 0.70 +0.7
499,372 - MPMX19_05017 0.70 -1.4
499,406 + MPMX19_05017 0.72 +0.8
499,407 - MPMX19_05017 0.72 -0.2
499,586 + MPMX19_05017 0.84 -0.7
499,587 - MPMX19_05017 0.84 +0.8
499,691 + -2.0
499,691 + +0.3
499,691 + -0.6
499,692 - -0.5
499,822 + +0.0
499,823 - +0.8
499,975 + MPMX19_05018 0.13 +0.5
499,975 + MPMX19_05018 0.13 -1.8
499,975 + MPMX19_05018 0.13 -0.3
499,975 + MPMX19_05018 0.13 -0.4
499,975 + MPMX19_05018 0.13 -1.3
499,975 + MPMX19_05018 0.13 +0.6
499,975 + MPMX19_05018 0.13 -0.2
499,975 + MPMX19_05018 0.13 +0.8
499,975 + MPMX19_05018 0.13 +0.6
499,975 + MPMX19_05018 0.13 -1.0
499,975 + MPMX19_05018 0.13 +1.5
499,975 + MPMX19_05018 0.13 -0.5
499,976 - MPMX19_05018 0.13 -2.0
499,976 - MPMX19_05018 0.13 +0.6
499,976 - MPMX19_05018 0.13 +0.8
500,044 + MPMX19_05018 0.18 +0.6
500,045 - MPMX19_05018 0.18 -1.4
500,084 + MPMX19_05018 0.20 -0.5
500,084 + MPMX19_05018 0.20 +0.8
500,084 + MPMX19_05018 0.20 -0.7
500,084 + MPMX19_05018 0.20 -0.7
500,084 + MPMX19_05018 0.20 +0.1
500,084 + MPMX19_05018 0.20 +0.3
500,085 - MPMX19_05018 0.20 +1.3
500,085 - MPMX19_05018 0.20 +0.2
500,085 - MPMX19_05018 0.20 -0.4
500,085 - MPMX19_05018 0.20 +0.6
500,085 - MPMX19_05018 0.20 -1.0
500,085 - MPMX19_05018 0.20 -1.0
500,086 + MPMX19_05018 0.21 -1.2
500,086 + MPMX19_05018 0.21 +0.3
500,086 + MPMX19_05018 0.21 -1.4
500,086 + MPMX19_05018 0.21 +0.7
500,086 + MPMX19_05018 0.21 -0.7
500,086 + MPMX19_05018 0.21 +1.4
500,086 + MPMX19_05018 0.21 +0.3
500,086 + MPMX19_05018 0.21 +0.2
500,086 + MPMX19_05018 0.21 -0.6
500,086 + MPMX19_05018 0.21 -0.8
500,087 - MPMX19_05018 0.21 -0.8
500,087 - MPMX19_05018 0.21 -2.0
500,087 - MPMX19_05018 0.21 -0.4
500,087 - MPMX19_05018 0.21 -0.3
500,087 - MPMX19_05018 0.21 +0.2
500,087 - MPMX19_05018 0.21 -1.9
500,254 + MPMX19_05018 0.32 +0.8
500,393 - MPMX19_05018 0.42 +1.0
500,419 + MPMX19_05018 0.44 +0.6
500,419 + MPMX19_05018 0.44 -0.0
500,420 - MPMX19_05018 0.44 +0.5
500,599 + MPMX19_05018 0.56 -0.2
500,599 + MPMX19_05018 0.56 +0.0
500,599 + MPMX19_05018 0.56 +0.1
500,599 + MPMX19_05018 0.56 +0.8
500,599 + MPMX19_05018 0.56 +0.3
500,599 + MPMX19_05018 0.56 -0.4
500,599 + MPMX19_05018 0.56 +0.8
500,599 + MPMX19_05018 0.56 +1.8
500,599 + MPMX19_05018 0.56 +1.8
500,599 + MPMX19_05018 0.56 -1.2
500,600 - MPMX19_05018 0.56 +1.4
500,600 - MPMX19_05018 0.56 +0.4
500,600 - MPMX19_05018 0.56 -1.5
500,600 - MPMX19_05018 0.56 -0.0
500,600 - MPMX19_05018 0.56 -0.9
500,600 - MPMX19_05018 0.56 +1.8
500,600 - MPMX19_05018 0.56 -0.7
500,600 - MPMX19_05018 0.56 -1.5
500,600 - MPMX19_05018 0.56 -0.5
500,600 - MPMX19_05018 0.56 +1.2
500,600 - MPMX19_05018 0.56 -0.5
500,672 - MPMX19_05018 0.61 +1.0
500,758 + MPMX19_05018 0.67 -0.5
500,758 + MPMX19_05018 0.67 +1.5
500,758 + MPMX19_05018 0.67 -1.8
500,758 + MPMX19_05018 0.67 -1.4
500,758 + MPMX19_05018 0.67 +0.0
500,758 + MPMX19_05018 0.67 +2.2
500,758 + MPMX19_05018 0.67 -0.2
500,758 + MPMX19_05018 0.67 -0.2
500,758 + MPMX19_05018 0.67 +0.8
500,758 + MPMX19_05018 0.67 -0.8
500,758 + MPMX19_05018 0.67 -0.1
500,758 + MPMX19_05018 0.67 -0.1
500,758 + MPMX19_05018 0.67 +0.8
500,758 + MPMX19_05018 0.67 +1.0
500,758 + MPMX19_05018 0.67 -1.0
500,759 - MPMX19_05018 0.67 -0.4
500,759 - MPMX19_05018 0.67 +0.2
500,759 - MPMX19_05018 0.67 +1.0
500,759 - MPMX19_05018 0.67 +0.5
500,759 - MPMX19_05018 0.67 +0.2
500,759 - MPMX19_05018 0.67 +0.2
500,759 - MPMX19_05018 0.67 +1.2
500,759 - MPMX19_05018 0.67 -0.2
500,759 - MPMX19_05018 0.67 -0.3
500,759 - MPMX19_05018 0.67 +1.0
500,759 - MPMX19_05018 0.67 -0.9
500,770 + MPMX19_05018 0.68 -1.2
500,771 - MPMX19_05018 0.68 -0.8
500,779 + MPMX19_05018 0.68 -0.9
500,779 + MPMX19_05018 0.68 -0.2
500,798 - MPMX19_05018 0.70 +0.4
500,887 + MPMX19_05018 0.76 -0.2
500,887 + MPMX19_05018 0.76 +1.2
500,888 - MPMX19_05018 0.76 +0.9
500,888 - MPMX19_05018 0.76 +0.4
500,888 - MPMX19_05018 0.76 -1.1
501,006 + MPMX19_05018 0.84 +0.8
501,006 + MPMX19_05018 0.84 -1.8
501,006 + MPMX19_05018 0.84 +1.0
501,006 + MPMX19_05018 0.84 +0.3
501,006 + MPMX19_05018 0.84 +1.0
501,006 + MPMX19_05018 0.84 +0.5
501,007 - MPMX19_05018 0.84 +0.4
501,007 - MPMX19_05018 0.84 -0.6
501,007 - MPMX19_05018 0.84 +1.2
501,134 - -0.5
501,211 + +1.4
501,211 + -0.1
501,240 + -1.3
501,241 - -0.2
501,242 + -0.2
501,292 + +1.2
501,381 + -0.3
501,381 + -0.0
501,452 + -0.6
501,452 + -1.2
501,453 - -0.2
501,453 - -0.2
501,453 - -0.2
501,983 + MPMX19_05019 0.34 +0.8
501,983 + MPMX19_05019 0.34 +1.6
502,031 + MPMX19_05019 0.37 -1.9
502,031 + MPMX19_05019 0.37 -2.0
502,031 + MPMX19_05019 0.37 -0.9
502,031 + MPMX19_05019 0.37 -0.5
502,031 + MPMX19_05019 0.37 +2.4
502,031 + MPMX19_05019 0.37 +0.0
502,031 + MPMX19_05019 0.37 -0.2
502,031 + MPMX19_05019 0.37 -1.4
502,031 + MPMX19_05019 0.37 -0.3
502,031 + MPMX19_05019 0.37 -2.2
502,031 + MPMX19_05019 0.37 -0.8
502,031 + MPMX19_05019 0.37 -0.8
502,031 + MPMX19_05019 0.37 -2.5
502,031 + MPMX19_05019 0.37 +1.1
502,031 + MPMX19_05019 0.37 -0.0
502,031 + MPMX19_05019 0.37 -1.2
502,031 + MPMX19_05019 0.37 +1.0
502,031 + MPMX19_05019 0.37 +0.2
502,031 + MPMX19_05019 0.37 +1.0
502,031 + MPMX19_05019 0.37 -1.7
502,031 + MPMX19_05019 0.37 -0.8
502,031 + MPMX19_05019 0.37 -0.5
502,032 - MPMX19_05019 0.37 +0.5
502,032 - MPMX19_05019 0.37 -0.7
502,032 - MPMX19_05019 0.37 -0.0
502,032 - MPMX19_05019 0.37 -0.7
502,032 - MPMX19_05019 0.37 -0.0
502,032 - MPMX19_05019 0.37 -0.4
502,032 - MPMX19_05019 0.37 -0.2
502,032 - MPMX19_05019 0.37 +1.8
502,032 - MPMX19_05019 0.37 -1.2
502,032 - MPMX19_05019 0.37 -0.4
502,032 - MPMX19_05019 0.37 +0.2
502,032 - MPMX19_05019 0.37 -0.8

Or see this region's nucleotide sequence