Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05017 and MPMX19_05018 overlap by 29 nucleotides MPMX19_05018 and MPMX19_05019 are separated by 230 nucleotides
MPMX19_05017: MPMX19_05017 - hypothetical protein, at 498,350 to 499,816
_05017
MPMX19_05018: MPMX19_05018 - HTH-type transcriptional regulator RamB, at 499,788 to 501,236
_05018
MPMX19_05019: MPMX19_05019 - Propionyl-CoA carboxylase beta chain, at 501,467 to 502,999
_05019
Position (kb)
499
500
501
502 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 499.007 kb on + strand, within MPMX19_05017 at 499.007 kb on + strand, within MPMX19_05017 at 499.344 kb on - strand, within MPMX19_05017 at 499.371 kb on + strand, within MPMX19_05017 at 499.371 kb on + strand, within MPMX19_05017 at 499.371 kb on + strand, within MPMX19_05017 at 499.372 kb on - strand, within MPMX19_05017 at 499.372 kb on - strand, within MPMX19_05017 at 499.372 kb on - strand, within MPMX19_05017 at 499.372 kb on - strand, within MPMX19_05017 at 499.372 kb on - strand, within MPMX19_05017 at 499.372 kb on - strand, within MPMX19_05017 at 499.372 kb on - strand, within MPMX19_05017 at 499.406 kb on + strand, within MPMX19_05017 at 499.407 kb on - strand, within MPMX19_05017 at 499.586 kb on + strand, within MPMX19_05017 at 499.587 kb on - strand, within MPMX19_05017 at 499.691 kb on + strand at 499.691 kb on + strand at 499.691 kb on + strand at 499.692 kb on - strand at 499.822 kb on + strand at 499.823 kb on - strand at 499.975 kb on + strand, within MPMX19_05018 at 499.975 kb on + strand, within MPMX19_05018 at 499.975 kb on + strand, within MPMX19_05018 at 499.975 kb on + strand, within MPMX19_05018 at 499.975 kb on + strand, within MPMX19_05018 at 499.975 kb on + strand, within MPMX19_05018 at 499.975 kb on + strand, within MPMX19_05018 at 499.975 kb on + strand, within MPMX19_05018 at 499.975 kb on + strand, within MPMX19_05018 at 499.975 kb on + strand, within MPMX19_05018 at 499.975 kb on + strand, within MPMX19_05018 at 499.975 kb on + strand, within MPMX19_05018 at 499.976 kb on - strand, within MPMX19_05018 at 499.976 kb on - strand, within MPMX19_05018 at 499.976 kb on - strand, within MPMX19_05018 at 500.044 kb on + strand, within MPMX19_05018 at 500.045 kb on - strand, within MPMX19_05018 at 500.084 kb on + strand, within MPMX19_05018 at 500.084 kb on + strand, within MPMX19_05018 at 500.084 kb on + strand, within MPMX19_05018 at 500.084 kb on + strand, within MPMX19_05018 at 500.084 kb on + strand, within MPMX19_05018 at 500.084 kb on + strand, within MPMX19_05018 at 500.085 kb on - strand, within MPMX19_05018 at 500.085 kb on - strand, within MPMX19_05018 at 500.085 kb on - strand, within MPMX19_05018 at 500.085 kb on - strand, within MPMX19_05018 at 500.085 kb on - strand, within MPMX19_05018 at 500.085 kb on - strand, within MPMX19_05018 at 500.086 kb on + strand, within MPMX19_05018 at 500.086 kb on + strand, within MPMX19_05018 at 500.086 kb on + strand, within MPMX19_05018 at 500.086 kb on + strand, within MPMX19_05018 at 500.086 kb on + strand, within MPMX19_05018 at 500.086 kb on + strand, within MPMX19_05018 at 500.086 kb on + strand, within MPMX19_05018 at 500.086 kb on + strand, within MPMX19_05018 at 500.086 kb on + strand, within MPMX19_05018 at 500.086 kb on + strand, within MPMX19_05018 at 500.087 kb on - strand, within MPMX19_05018 at 500.087 kb on - strand, within MPMX19_05018 at 500.087 kb on - strand, within MPMX19_05018 at 500.087 kb on - strand, within MPMX19_05018 at 500.087 kb on - strand, within MPMX19_05018 at 500.087 kb on - strand, within MPMX19_05018 at 500.254 kb on + strand, within MPMX19_05018 at 500.393 kb on - strand, within MPMX19_05018 at 500.419 kb on + strand, within MPMX19_05018 at 500.419 kb on + strand, within MPMX19_05018 at 500.420 kb on - strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.599 kb on + strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.600 kb on - strand, within MPMX19_05018 at 500.672 kb on - strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.758 kb on + strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.759 kb on - strand, within MPMX19_05018 at 500.770 kb on + strand, within MPMX19_05018 at 500.771 kb on - strand, within MPMX19_05018 at 500.779 kb on + strand, within MPMX19_05018 at 500.779 kb on + strand, within MPMX19_05018 at 500.798 kb on - strand, within MPMX19_05018 at 500.887 kb on + strand, within MPMX19_05018 at 500.887 kb on + strand, within MPMX19_05018 at 500.888 kb on - strand, within MPMX19_05018 at 500.888 kb on - strand, within MPMX19_05018 at 500.888 kb on - strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.006 kb on + strand, within MPMX19_05018 at 501.007 kb on - strand, within MPMX19_05018 at 501.007 kb on - strand, within MPMX19_05018 at 501.007 kb on - strand, within MPMX19_05018 at 501.134 kb on - strand at 501.211 kb on + strand at 501.211 kb on + strand at 501.240 kb on + strand at 501.241 kb on - strand at 501.242 kb on + strand at 501.292 kb on + strand at 501.381 kb on + strand at 501.381 kb on + strand at 501.452 kb on + strand at 501.452 kb on + strand at 501.453 kb on - strand at 501.453 kb on - strand at 501.453 kb on - strand at 501.983 kb on + strand, within MPMX19_05019 at 501.983 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.031 kb on + strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019 at 502.032 kb on - strand, within MPMX19_05019
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 499,007 + MPMX19_05017 0.45 -1.9 499,007 + MPMX19_05017 0.45 -0.8 499,344 - MPMX19_05017 0.68 +2.2 499,371 + MPMX19_05017 0.70 -0.4 499,371 + MPMX19_05017 0.70 -0.8 499,371 + MPMX19_05017 0.70 -0.0 499,372 - MPMX19_05017 0.70 +0.6 499,372 - MPMX19_05017 0.70 +0.4 499,372 - MPMX19_05017 0.70 -1.5 499,372 - MPMX19_05017 0.70 +0.2 499,372 - MPMX19_05017 0.70 -0.3 499,372 - MPMX19_05017 0.70 +0.7 499,372 - MPMX19_05017 0.70 -1.4 499,406 + MPMX19_05017 0.72 +0.8 499,407 - MPMX19_05017 0.72 -0.2 499,586 + MPMX19_05017 0.84 -0.7 499,587 - MPMX19_05017 0.84 +0.8 499,691 + -2.0 499,691 + +0.3 499,691 + -0.6 499,692 - -0.5 499,822 + +0.0 499,823 - +0.8 499,975 + MPMX19_05018 0.13 +0.5 499,975 + MPMX19_05018 0.13 -1.8 499,975 + MPMX19_05018 0.13 -0.3 499,975 + MPMX19_05018 0.13 -0.4 499,975 + MPMX19_05018 0.13 -1.3 499,975 + MPMX19_05018 0.13 +0.6 499,975 + MPMX19_05018 0.13 -0.2 499,975 + MPMX19_05018 0.13 +0.8 499,975 + MPMX19_05018 0.13 +0.6 499,975 + MPMX19_05018 0.13 -1.0 499,975 + MPMX19_05018 0.13 +1.5 499,975 + MPMX19_05018 0.13 -0.5 499,976 - MPMX19_05018 0.13 -2.0 499,976 - MPMX19_05018 0.13 +0.6 499,976 - MPMX19_05018 0.13 +0.8 500,044 + MPMX19_05018 0.18 +0.6 500,045 - MPMX19_05018 0.18 -1.4 500,084 + MPMX19_05018 0.20 -0.5 500,084 + MPMX19_05018 0.20 +0.8 500,084 + MPMX19_05018 0.20 -0.7 500,084 + MPMX19_05018 0.20 -0.7 500,084 + MPMX19_05018 0.20 +0.1 500,084 + MPMX19_05018 0.20 +0.3 500,085 - MPMX19_05018 0.20 +1.3 500,085 - MPMX19_05018 0.20 +0.2 500,085 - MPMX19_05018 0.20 -0.4 500,085 - MPMX19_05018 0.20 +0.6 500,085 - MPMX19_05018 0.20 -1.0 500,085 - MPMX19_05018 0.20 -1.0 500,086 + MPMX19_05018 0.21 -1.2 500,086 + MPMX19_05018 0.21 +0.3 500,086 + MPMX19_05018 0.21 -1.4 500,086 + MPMX19_05018 0.21 +0.7 500,086 + MPMX19_05018 0.21 -0.7 500,086 + MPMX19_05018 0.21 +1.4 500,086 + MPMX19_05018 0.21 +0.3 500,086 + MPMX19_05018 0.21 +0.2 500,086 + MPMX19_05018 0.21 -0.6 500,086 + MPMX19_05018 0.21 -0.8 500,087 - MPMX19_05018 0.21 -0.8 500,087 - MPMX19_05018 0.21 -2.0 500,087 - MPMX19_05018 0.21 -0.4 500,087 - MPMX19_05018 0.21 -0.3 500,087 - MPMX19_05018 0.21 +0.2 500,087 - MPMX19_05018 0.21 -1.9 500,254 + MPMX19_05018 0.32 +0.8 500,393 - MPMX19_05018 0.42 +1.0 500,419 + MPMX19_05018 0.44 +0.6 500,419 + MPMX19_05018 0.44 -0.0 500,420 - MPMX19_05018 0.44 +0.5 500,599 + MPMX19_05018 0.56 -0.2 500,599 + MPMX19_05018 0.56 +0.0 500,599 + MPMX19_05018 0.56 +0.1 500,599 + MPMX19_05018 0.56 +0.8 500,599 + MPMX19_05018 0.56 +0.3 500,599 + MPMX19_05018 0.56 -0.4 500,599 + MPMX19_05018 0.56 +0.8 500,599 + MPMX19_05018 0.56 +1.8 500,599 + MPMX19_05018 0.56 +1.8 500,599 + MPMX19_05018 0.56 -1.2 500,600 - MPMX19_05018 0.56 +1.4 500,600 - MPMX19_05018 0.56 +0.4 500,600 - MPMX19_05018 0.56 -1.5 500,600 - MPMX19_05018 0.56 -0.0 500,600 - MPMX19_05018 0.56 -0.9 500,600 - MPMX19_05018 0.56 +1.8 500,600 - MPMX19_05018 0.56 -0.7 500,600 - MPMX19_05018 0.56 -1.5 500,600 - MPMX19_05018 0.56 -0.5 500,600 - MPMX19_05018 0.56 +1.2 500,600 - MPMX19_05018 0.56 -0.5 500,672 - MPMX19_05018 0.61 +1.0 500,758 + MPMX19_05018 0.67 -0.5 500,758 + MPMX19_05018 0.67 +1.5 500,758 + MPMX19_05018 0.67 -1.8 500,758 + MPMX19_05018 0.67 -1.4 500,758 + MPMX19_05018 0.67 +0.0 500,758 + MPMX19_05018 0.67 +2.2 500,758 + MPMX19_05018 0.67 -0.2 500,758 + MPMX19_05018 0.67 -0.2 500,758 + MPMX19_05018 0.67 +0.8 500,758 + MPMX19_05018 0.67 -0.8 500,758 + MPMX19_05018 0.67 -0.1 500,758 + MPMX19_05018 0.67 -0.1 500,758 + MPMX19_05018 0.67 +0.8 500,758 + MPMX19_05018 0.67 +1.0 500,758 + MPMX19_05018 0.67 -1.0 500,759 - MPMX19_05018 0.67 -0.4 500,759 - MPMX19_05018 0.67 +0.2 500,759 - MPMX19_05018 0.67 +1.0 500,759 - MPMX19_05018 0.67 +0.5 500,759 - MPMX19_05018 0.67 +0.2 500,759 - MPMX19_05018 0.67 +0.2 500,759 - MPMX19_05018 0.67 +1.2 500,759 - MPMX19_05018 0.67 -0.2 500,759 - MPMX19_05018 0.67 -0.3 500,759 - MPMX19_05018 0.67 +1.0 500,759 - MPMX19_05018 0.67 -0.9 500,770 + MPMX19_05018 0.68 -1.2 500,771 - MPMX19_05018 0.68 -0.8 500,779 + MPMX19_05018 0.68 -0.9 500,779 + MPMX19_05018 0.68 -0.2 500,798 - MPMX19_05018 0.70 +0.4 500,887 + MPMX19_05018 0.76 -0.2 500,887 + MPMX19_05018 0.76 +1.2 500,888 - MPMX19_05018 0.76 +0.9 500,888 - MPMX19_05018 0.76 +0.4 500,888 - MPMX19_05018 0.76 -1.1 501,006 + MPMX19_05018 0.84 +0.8 501,006 + MPMX19_05018 0.84 -1.8 501,006 + MPMX19_05018 0.84 +1.0 501,006 + MPMX19_05018 0.84 +0.3 501,006 + MPMX19_05018 0.84 +1.0 501,006 + MPMX19_05018 0.84 +0.5 501,007 - MPMX19_05018 0.84 +0.4 501,007 - MPMX19_05018 0.84 -0.6 501,007 - MPMX19_05018 0.84 +1.2 501,134 - -0.5 501,211 + +1.4 501,211 + -0.1 501,240 + -1.3 501,241 - -0.2 501,242 + -0.2 501,292 + +1.2 501,381 + -0.3 501,381 + -0.0 501,452 + -0.6 501,452 + -1.2 501,453 - -0.2 501,453 - -0.2 501,453 - -0.2 501,983 + MPMX19_05019 0.34 +0.8 501,983 + MPMX19_05019 0.34 +1.6 502,031 + MPMX19_05019 0.37 -1.9 502,031 + MPMX19_05019 0.37 -2.0 502,031 + MPMX19_05019 0.37 -0.9 502,031 + MPMX19_05019 0.37 -0.5 502,031 + MPMX19_05019 0.37 +2.4 502,031 + MPMX19_05019 0.37 +0.0 502,031 + MPMX19_05019 0.37 -0.2 502,031 + MPMX19_05019 0.37 -1.4 502,031 + MPMX19_05019 0.37 -0.3 502,031 + MPMX19_05019 0.37 -2.2 502,031 + MPMX19_05019 0.37 -0.8 502,031 + MPMX19_05019 0.37 -0.8 502,031 + MPMX19_05019 0.37 -2.5 502,031 + MPMX19_05019 0.37 +1.1 502,031 + MPMX19_05019 0.37 -0.0 502,031 + MPMX19_05019 0.37 -1.2 502,031 + MPMX19_05019 0.37 +1.0 502,031 + MPMX19_05019 0.37 +0.2 502,031 + MPMX19_05019 0.37 +1.0 502,031 + MPMX19_05019 0.37 -1.7 502,031 + MPMX19_05019 0.37 -0.8 502,031 + MPMX19_05019 0.37 -0.5 502,032 - MPMX19_05019 0.37 +0.5 502,032 - MPMX19_05019 0.37 -0.7 502,032 - MPMX19_05019 0.37 -0.0 502,032 - MPMX19_05019 0.37 -0.7 502,032 - MPMX19_05019 0.37 -0.0 502,032 - MPMX19_05019 0.37 -0.4 502,032 - MPMX19_05019 0.37 -0.2 502,032 - MPMX19_05019 0.37 +1.8 502,032 - MPMX19_05019 0.37 -1.2 502,032 - MPMX19_05019 0.37 -0.4 502,032 - MPMX19_05019 0.37 +0.2 502,032 - MPMX19_05019 0.37 -0.8
Or see this region's nucleotide sequence