Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05009 and MPMX19_05010 are separated by 28 nucleotides MPMX19_05010 and MPMX19_05011 overlap by 4 nucleotides MPMX19_05011 and MPMX19_05012 are separated by 214 nucleotides MPMX19_05012 and MPMX19_05013 are separated by 30 nucleotides
MPMX19_05009: MPMX19_05009 - hypothetical protein, at 491,908 to 492,243
_05009
MPMX19_05010: MPMX19_05010 - Oxygen-dependent coproporphyrinogen-III oxidase, at 492,272 to 493,159
_05010
MPMX19_05011: MPMX19_05011 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 493,156 to 493,716
_05011
MPMX19_05012: MPMX19_05012 - Ubiquinol-cytochrome c reductase iron-sulfur subunit, at 493,931 to 494,500
_05012
MPMX19_05013: MPMX19_05013 - Cytochrome b, at 494,531 to 495,799
_05013
Position (kb) 493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.467 kb on - strand, within MPMX19_05011 at 493.511 kb on + strand, within MPMX19_05011 at 493.511 kb on + strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.712 kb on + strand at 493.712 kb on + strand at 493.712 kb on + strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.768 kb on - strand at 493.768 kb on - strand at 493.768 kb on - strand at 493.769 kb on + strand at 493.769 kb on + strand at 493.769 kb on + strand at 493.769 kb on + strand at 493.770 kb on - strand at 493.792 kb on + strand at 493.792 kb on + strand at 493.792 kb on + strand at 493.793 kb on - strand at 493.862 kb on + strand at 493.862 kb on + strand at 493.862 kb on + strand at 493.862 kb on + strand at 493.930 kb on + strand at 493.930 kb on + strand at 493.930 kb on + strand at 493.930 kb on + strand at 494.367 kb on - strand, within MPMX19_05012 at 494.402 kb on + strand, within MPMX19_05012 at 494.403 kb on - strand, within MPMX19_05012 at 494.463 kb on - strand at 494.463 kb on - strand at 494.621 kb on + strand at 494.622 kb on - strand at 494.654 kb on + strand at 494.654 kb on + strand at 494.654 kb on + strand at 494.654 kb on + strand at 494.654 kb on + strand at 494.654 kb on + strand at 494.655 kb on - strand at 494.655 kb on - strand at 494.655 kb on - strand at 494.655 kb on - strand at 494.655 kb on - strand at 494.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 493,406 + MPMX19_05011 0.45 -0.1 493,406 + MPMX19_05011 0.45 +1.8 493,406 + MPMX19_05011 0.45 -1.9 493,406 + MPMX19_05011 0.45 +0.7 493,406 + MPMX19_05011 0.45 +0.4 493,407 - MPMX19_05011 0.45 +1.1 493,407 - MPMX19_05011 0.45 -1.0 493,407 - MPMX19_05011 0.45 +0.2 493,407 - MPMX19_05011 0.45 -1.7 493,467 - MPMX19_05011 0.55 -0.5 493,511 + MPMX19_05011 0.63 -0.1 493,511 + MPMX19_05011 0.63 +1.8 493,512 - MPMX19_05011 0.63 -0.8 493,512 - MPMX19_05011 0.63 +0.8 493,512 - MPMX19_05011 0.63 -0.3 493,512 - MPMX19_05011 0.63 +0.6 493,512 - MPMX19_05011 0.63 +0.5 493,512 - MPMX19_05011 0.63 +0.3 493,512 - MPMX19_05011 0.63 +0.3 493,512 - MPMX19_05011 0.63 -0.1 493,712 + -1.7 493,712 + -1.2 493,712 + +0.0 493,713 - -0.3 493,713 - -1.2 493,713 - -0.0 493,713 - -0.1 493,713 - -1.2 493,713 - +0.4 493,767 + +1.1 493,767 + +0.7 493,767 + +1.8 493,767 + -0.4 493,767 + -0.4 493,767 + -0.0 493,768 - +0.5 493,768 - +0.8 493,768 - -0.5 493,769 + +0.3 493,769 + -0.5 493,769 + -1.7 493,769 + -1.3 493,770 - -0.0 493,792 + +0.8 493,792 + -0.1 493,792 + +0.8 493,793 - +0.4 493,862 + -1.0 493,862 + -0.7 493,862 + -2.2 493,862 + -1.0 493,930 + +1.0 493,930 + +0.8 493,930 + +0.8 493,930 + +1.2 494,367 - MPMX19_05012 0.76 +1.8 494,402 + MPMX19_05012 0.83 -0.2 494,403 - MPMX19_05012 0.83 -0.8 494,463 - -0.2 494,463 - +0.5 494,621 + +0.2 494,622 - -0.2 494,654 + -1.5 494,654 + +0.8 494,654 + +0.2 494,654 + -0.5 494,654 + +1.2 494,654 + +0.5 494,655 - -1.2 494,655 - -1.7 494,655 - +1.8 494,655 - +0.5 494,655 - +1.8 494,655 - -0.5
Or see this region's nucleotide sequence