Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05002

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05000 and MPMX19_05001 are separated by 148 nucleotidesMPMX19_05001 and MPMX19_05002 are separated by 33 nucleotidesMPMX19_05002 and MPMX19_05003 are separated by 158 nucleotidesMPMX19_05003 and MPMX19_05004 are separated by 33 nucleotides MPMX19_05000: MPMX19_05000 - hypothetical protein, at 483,304 to 484,149 _05000 MPMX19_05001: MPMX19_05001 - hypothetical protein, at 484,298 to 484,690 _05001 MPMX19_05002: MPMX19_05002 - HTH-type transcriptional regulator DmlR, at 484,724 to 485,689 _05002 MPMX19_05003: MPMX19_05003 - NAD(P)H dehydrogenase (quinone), at 485,848 to 486,450 _05003 MPMX19_05004: MPMX19_05004 - Glutathionyl-hydroquinone reductase YqjG, at 486,484 to 487,443 _05004 Position (kb) 484 485 486Strain fitness (log2 ratio) -2 -1 0 1 2at 483.760 kb on + strand, within MPMX19_05000at 483.761 kb on - strand, within MPMX19_05000at 483.826 kb on + strand, within MPMX19_05000at 483.826 kb on + strand, within MPMX19_05000at 483.826 kb on + strand, within MPMX19_05000at 483.827 kb on - strand, within MPMX19_05000at 483.827 kb on - strand, within MPMX19_05000at 483.827 kb on - strand, within MPMX19_05000at 483.827 kb on - strand, within MPMX19_05000at 483.827 kb on - strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.946 kb on + strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 483.947 kb on - strand, within MPMX19_05000at 484.048 kb on + strand, within MPMX19_05000at 484.049 kb on - strand, within MPMX19_05000at 484.167 kb on + strandat 484.225 kb on - strandat 484.225 kb on - strandat 484.225 kb on - strandat 484.225 kb on - strandat 484.238 kb on + strandat 484.238 kb on + strandat 484.239 kb on - strandat 484.725 kb on + strandat 484.801 kb on - strandat 484.878 kb on + strand, within MPMX19_05002at 484.878 kb on + strand, within MPMX19_05002at 484.878 kb on + strand, within MPMX19_05002at 484.879 kb on - strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.115 kb on + strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.116 kb on - strand, within MPMX19_05002at 485.178 kb on + strand, within MPMX19_05002at 485.178 kb on + strand, within MPMX19_05002at 485.179 kb on - strand, within MPMX19_05002at 485.179 kb on - strand, within MPMX19_05002at 485.274 kb on + strand, within MPMX19_05002at 485.274 kb on + strand, within MPMX19_05002at 485.493 kb on + strand, within MPMX19_05002at 485.493 kb on + strand, within MPMX19_05002at 485.493 kb on + strand, within MPMX19_05002at 485.493 kb on + strand, within MPMX19_05002at 485.493 kb on + strand, within MPMX19_05002at 485.493 kb on + strand, within MPMX19_05002at 485.494 kb on - strand, within MPMX19_05002at 485.494 kb on - strand, within MPMX19_05002at 485.494 kb on - strand, within MPMX19_05002at 485.494 kb on - strand, within MPMX19_05002at 485.494 kb on - strand, within MPMX19_05002at 485.494 kb on - strand, within MPMX19_05002at 485.494 kb on - strand, within MPMX19_05002at 485.496 kb on + strand, within MPMX19_05002at 485.496 kb on + strand, within MPMX19_05002at 485.496 kb on + strand, within MPMX19_05002at 485.496 kb on + strand, within MPMX19_05002at 485.496 kb on + strand, within MPMX19_05002at 485.496 kb on + strand, within MPMX19_05002at 485.496 kb on + strand, within MPMX19_05002at 485.497 kb on - strand, within MPMX19_05002at 485.497 kb on - strand, within MPMX19_05002at 485.497 kb on - strand, within MPMX19_05002at 485.497 kb on - strand, within MPMX19_05002at 485.497 kb on - strand, within MPMX19_05002at 485.497 kb on - strand, within MPMX19_05002at 485.700 kb on + strandat 485.701 kb on - strandat 485.701 kb on - strandat 485.758 kb on + strandat 485.758 kb on + strandat 485.759 kb on - strandat 485.759 kb on - strandat 485.759 kb on - strandat 485.759 kb on - strandat 485.759 kb on - strandat 485.869 kb on + strandat 485.869 kb on + strandat 485.869 kb on + strandat 485.870 kb on - strandat 485.870 kb on - strandat 485.870 kb on - strandat 485.870 kb on - strandat 485.870 kb on - strandat 485.870 kb on - strandat 485.870 kb on - strandat 485.870 kb on - strandat 485.872 kb on + strandat 485.872 kb on + strandat 485.872 kb on + strandat 485.872 kb on + strandat 485.872 kb on + strandat 485.872 kb on + strandat 485.873 kb on - strandat 485.873 kb on - strandat 485.873 kb on - strandat 485.873 kb on - strandat 485.873 kb on - strandat 485.873 kb on - strandat 486.004 kb on + strand, within MPMX19_05003at 486.004 kb on + strand, within MPMX19_05003at 486.004 kb on + strand, within MPMX19_05003at 486.004 kb on + strand, within MPMX19_05003at 486.005 kb on - strand, within MPMX19_05003at 486.005 kb on - strand, within MPMX19_05003at 486.005 kb on - strand, within MPMX19_05003at 486.005 kb on - strand, within MPMX19_05003at 486.055 kb on + strand, within MPMX19_05003at 486.055 kb on + strand, within MPMX19_05003at 486.056 kb on - strand, within MPMX19_05003at 486.280 kb on + strand, within MPMX19_05003at 486.280 kb on + strand, within MPMX19_05003at 486.281 kb on - strand, within MPMX19_05003at 486.281 kb on - strand, within MPMX19_05003at 486.460 kb on + strandat 486.460 kb on + strandat 486.460 kb on + strandat 486.460 kb on + strandat 486.460 kb on + strandat 486.461 kb on - strandat 486.461 kb on - strandat 486.461 kb on - strandat 486.461 kb on - strandat 486.523 kb on + strandat 486.523 kb on + strandat 486.523 kb on + strandat 486.523 kb on + strandat 486.523 kb on + strandat 486.523 kb on + strandat 486.523 kb on + strandat 486.523 kb on + strandat 486.523 kb on + strandat 486.523 kb on + strandat 486.524 kb on - strandat 486.524 kb on - strandat 486.524 kb on - strandat 486.524 kb on - strandat 486.524 kb on - strandat 486.608 kb on - strand, within MPMX19_05004at 486.628 kb on + strand, within MPMX19_05004at 486.628 kb on + strand, within MPMX19_05004

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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483,760 + MPMX19_05000 0.54 -1.9
483,761 - MPMX19_05000 0.54 -0.7
483,826 + MPMX19_05000 0.62 -0.1
483,826 + MPMX19_05000 0.62 -1.1
483,826 + MPMX19_05000 0.62 +0.4
483,827 - MPMX19_05000 0.62 -0.8
483,827 - MPMX19_05000 0.62 -0.1
483,827 - MPMX19_05000 0.62 -0.9
483,827 - MPMX19_05000 0.62 +0.1
483,827 - MPMX19_05000 0.62 -0.7
483,946 + MPMX19_05000 0.76 +0.1
483,946 + MPMX19_05000 0.76 -1.2
483,946 + MPMX19_05000 0.76 -1.1
483,946 + MPMX19_05000 0.76 -1.5
483,946 + MPMX19_05000 0.76 -1.2
483,946 + MPMX19_05000 0.76 -0.2
483,946 + MPMX19_05000 0.76 -1.5
483,946 + MPMX19_05000 0.76 -1.5
483,946 + MPMX19_05000 0.76 -1.2
483,947 - MPMX19_05000 0.76 -1.0
483,947 - MPMX19_05000 0.76 +1.8
483,947 - MPMX19_05000 0.76 +0.8
483,947 - MPMX19_05000 0.76 -1.4
483,947 - MPMX19_05000 0.76 +0.2
483,947 - MPMX19_05000 0.76 +0.7
483,947 - MPMX19_05000 0.76 +0.8
483,947 - MPMX19_05000 0.76 -0.2
483,947 - MPMX19_05000 0.76 -1.2
483,947 - MPMX19_05000 0.76 -1.0
483,947 - MPMX19_05000 0.76 -1.0
483,947 - MPMX19_05000 0.76 -1.3
483,947 - MPMX19_05000 0.76 -0.3
483,947 - MPMX19_05000 0.76 +1.5
483,947 - MPMX19_05000 0.76 -0.4
484,048 + MPMX19_05000 0.88 +0.8
484,049 - MPMX19_05000 0.88 -0.9
484,167 + +0.8
484,225 - -1.0
484,225 - -1.8
484,225 - +0.3
484,225 - +1.0
484,238 + -0.2
484,238 + -0.7
484,239 - -0.0
484,725 + +0.1
484,801 - +0.5
484,878 + MPMX19_05002 0.16 -1.2
484,878 + MPMX19_05002 0.16 -1.5
484,878 + MPMX19_05002 0.16 +0.0
484,879 - MPMX19_05002 0.16 +2.2
485,115 + MPMX19_05002 0.40 +1.0
485,115 + MPMX19_05002 0.40 -0.7
485,115 + MPMX19_05002 0.40 +0.5
485,115 + MPMX19_05002 0.40 -0.4
485,115 + MPMX19_05002 0.40 +0.0
485,115 + MPMX19_05002 0.40 -0.4
485,115 + MPMX19_05002 0.40 -1.3
485,115 + MPMX19_05002 0.40 -0.4
485,115 + MPMX19_05002 0.40 -0.5
485,115 + MPMX19_05002 0.40 +0.5
485,116 - MPMX19_05002 0.41 -0.4
485,116 - MPMX19_05002 0.41 +1.8
485,116 - MPMX19_05002 0.41 +1.3
485,116 - MPMX19_05002 0.41 -0.3
485,116 - MPMX19_05002 0.41 -2.5
485,116 - MPMX19_05002 0.41 -0.1
485,116 - MPMX19_05002 0.41 -1.5
485,116 - MPMX19_05002 0.41 -0.7
485,116 - MPMX19_05002 0.41 -0.5
485,178 + MPMX19_05002 0.47 -0.2
485,178 + MPMX19_05002 0.47 +0.8
485,179 - MPMX19_05002 0.47 +1.2
485,179 - MPMX19_05002 0.47 +0.8
485,274 + MPMX19_05002 0.57 -1.1
485,274 + MPMX19_05002 0.57 +0.8
485,493 + MPMX19_05002 0.80 -0.9
485,493 + MPMX19_05002 0.80 -0.0
485,493 + MPMX19_05002 0.80 -0.7
485,493 + MPMX19_05002 0.80 +0.5
485,493 + MPMX19_05002 0.80 -0.5
485,493 + MPMX19_05002 0.80 +0.2
485,494 - MPMX19_05002 0.80 -2.1
485,494 - MPMX19_05002 0.80 -1.4
485,494 - MPMX19_05002 0.80 +0.8
485,494 - MPMX19_05002 0.80 +0.3
485,494 - MPMX19_05002 0.80 -0.2
485,494 - MPMX19_05002 0.80 +0.2
485,494 - MPMX19_05002 0.80 -2.2
485,496 + MPMX19_05002 0.80 -0.3
485,496 + MPMX19_05002 0.80 -1.7
485,496 + MPMX19_05002 0.80 -1.5
485,496 + MPMX19_05002 0.80 -0.3
485,496 + MPMX19_05002 0.80 +0.4
485,496 + MPMX19_05002 0.80 -1.6
485,496 + MPMX19_05002 0.80 -0.9
485,497 - MPMX19_05002 0.80 -0.4
485,497 - MPMX19_05002 0.80 +0.3
485,497 - MPMX19_05002 0.80 +1.8
485,497 - MPMX19_05002 0.80 +0.4
485,497 - MPMX19_05002 0.80 -0.4
485,497 - MPMX19_05002 0.80 -0.4
485,700 + -1.2
485,701 - -2.1
485,701 - +0.6
485,758 + -2.2
485,758 + +0.8
485,759 - -1.3
485,759 - -0.8
485,759 - -0.6
485,759 - +1.6
485,759 - -0.5
485,869 + -1.0
485,869 + +0.8
485,869 + -1.7
485,870 - +0.8
485,870 - +1.4
485,870 - -0.1
485,870 - -0.8
485,870 - -1.1
485,870 - -0.9
485,870 - +0.6
485,870 - -0.7
485,872 + +1.2
485,872 + +0.4
485,872 + +0.2
485,872 + -0.5
485,872 + -1.0
485,872 + -0.8
485,873 - -1.4
485,873 - -1.0
485,873 - -1.0
485,873 - -1.5
485,873 - +1.0
485,873 - +0.2
486,004 + MPMX19_05003 0.26 -0.2
486,004 + MPMX19_05003 0.26 +0.7
486,004 + MPMX19_05003 0.26 -0.4
486,004 + MPMX19_05003 0.26 -2.1
486,005 - MPMX19_05003 0.26 -1.4
486,005 - MPMX19_05003 0.26 -2.0
486,005 - MPMX19_05003 0.26 -0.8
486,005 - MPMX19_05003 0.26 -1.8
486,055 + MPMX19_05003 0.34 +0.1
486,055 + MPMX19_05003 0.34 -1.8
486,056 - MPMX19_05003 0.34 -0.3
486,280 + MPMX19_05003 0.72 -0.2
486,280 + MPMX19_05003 0.72 -0.1
486,281 - MPMX19_05003 0.72 +0.8
486,281 - MPMX19_05003 0.72 +0.5
486,460 + -0.8
486,460 + -1.8
486,460 + -1.2
486,460 + -1.5
486,460 + +0.1
486,461 - +0.6
486,461 - -0.2
486,461 - -0.1
486,461 - -0.8
486,523 + +0.1
486,523 + +0.5
486,523 + -0.2
486,523 + -2.1
486,523 + -0.3
486,523 + +0.7
486,523 + -1.5
486,523 + -1.4
486,523 + -0.2
486,523 + +0.9
486,524 - -2.2
486,524 - -0.3
486,524 - -0.9
486,524 - -0.7
486,524 - -0.0
486,608 - MPMX19_05004 0.13 -0.4
486,628 + MPMX19_05004 0.15 +0.8
486,628 + MPMX19_05004 0.15 -0.3

Or see this region's nucleotide sequence