Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04996

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04994 and MPMX19_04995 overlap by 4 nucleotidesMPMX19_04995 and MPMX19_04996 are separated by 25 nucleotidesMPMX19_04996 and MPMX19_04997 are separated by 33 nucleotides MPMX19_04994: MPMX19_04994 - Aminodeoxychorismate synthase component 1, at 474,472 to 475,839 _04994 MPMX19_04995: MPMX19_04995 - D-alanine aminotransferase, at 475,836 to 476,642 _04995 MPMX19_04996: MPMX19_04996 - hypothetical protein, at 476,668 to 477,111 _04996 MPMX19_04997: MPMX19_04997 - hypothetical protein, at 477,145 to 478,764 _04997 Position (kb) 476 477 478Strain fitness (log2 ratio) -2 -1 0 1at 476.025 kb on + strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.277 kb on + strand, within MPMX19_04995at 476.277 kb on + strand, within MPMX19_04995at 476.277 kb on + strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.658 kb on - strandat 476.800 kb on + strand, within MPMX19_04996at 476.800 kb on + strand, within MPMX19_04996at 476.801 kb on - strand, within MPMX19_04996at 476.920 kb on + strand, within MPMX19_04996at 476.920 kb on + strand, within MPMX19_04996at 476.921 kb on - strand, within MPMX19_04996at 477.161 kb on + strandat 477.161 kb on + strandat 477.161 kb on + strandat 477.161 kb on + strandat 477.161 kb on + strandat 477.162 kb on - strandat 477.404 kb on + strand, within MPMX19_04997at 477.404 kb on + strand, within MPMX19_04997at 477.405 kb on - strand, within MPMX19_04997at 477.405 kb on - strand, within MPMX19_04997at 477.405 kb on - strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.504 kb on - strand, within MPMX19_04997

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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476,025 + MPMX19_04995 0.23 +0.8
476,026 - MPMX19_04995 0.24 -0.5
476,026 - MPMX19_04995 0.24 +0.3
476,026 - MPMX19_04995 0.24 +0.0
476,026 - MPMX19_04995 0.24 -0.8
476,026 - MPMX19_04995 0.24 -2.5
476,026 - MPMX19_04995 0.24 -0.0
476,026 - MPMX19_04995 0.24 -2.0
476,277 + MPMX19_04995 0.55 -1.7
476,277 + MPMX19_04995 0.55 -0.7
476,277 + MPMX19_04995 0.55 -0.5
476,278 - MPMX19_04995 0.55 -2.3
476,278 - MPMX19_04995 0.55 -0.2
476,278 - MPMX19_04995 0.55 -2.1
476,278 - MPMX19_04995 0.55 -0.8
476,640 + -0.1
476,640 + -1.9
476,640 + +0.8
476,640 + -0.3
476,640 + +1.5
476,640 + -0.2
476,641 - -1.7
476,641 - +0.6
476,641 - -0.6
476,641 - -1.4
476,641 - -0.0
476,658 - +1.0
476,800 + MPMX19_04996 0.30 +0.3
476,800 + MPMX19_04996 0.30 -0.9
476,801 - MPMX19_04996 0.30 -2.2
476,920 + MPMX19_04996 0.57 +0.2
476,920 + MPMX19_04996 0.57 -1.7
476,921 - MPMX19_04996 0.57 -1.4
477,161 + -1.5
477,161 + -0.7
477,161 + -1.6
477,161 + -0.1
477,161 + +0.6
477,162 - -1.5
477,404 + MPMX19_04997 0.16 +0.0
477,404 + MPMX19_04997 0.16 +1.1
477,405 - MPMX19_04997 0.16 -1.5
477,405 - MPMX19_04997 0.16 -0.5
477,405 - MPMX19_04997 0.16 -0.7
477,410 + MPMX19_04997 0.16 +0.4
477,410 + MPMX19_04997 0.16 +0.6
477,410 + MPMX19_04997 0.16 -0.5
477,410 + MPMX19_04997 0.16 -0.7
477,410 + MPMX19_04997 0.16 +0.4
477,410 + MPMX19_04997 0.16 -0.2
477,410 + MPMX19_04997 0.16 +0.8
477,410 + MPMX19_04997 0.16 -0.4
477,410 + MPMX19_04997 0.16 -0.5
477,410 + MPMX19_04997 0.16 +0.0
477,410 + MPMX19_04997 0.16 -1.4
477,411 - MPMX19_04997 0.16 +0.5
477,411 - MPMX19_04997 0.16 +0.5
477,411 - MPMX19_04997 0.16 -0.2
477,411 - MPMX19_04997 0.16 -1.0
477,411 - MPMX19_04997 0.16 -0.7
477,411 - MPMX19_04997 0.16 -0.3
477,411 - MPMX19_04997 0.16 -1.3
477,411 - MPMX19_04997 0.16 -0.2
477,411 - MPMX19_04997 0.16 -0.6
477,411 - MPMX19_04997 0.16 -0.6
477,411 - MPMX19_04997 0.16 -0.5
477,411 - MPMX19_04997 0.16 +0.2
477,411 - MPMX19_04997 0.16 -0.6
477,411 - MPMX19_04997 0.16 -0.5
477,411 - MPMX19_04997 0.16 +0.0
477,411 - MPMX19_04997 0.16 -1.3
477,452 + MPMX19_04997 0.19 +0.6
477,452 + MPMX19_04997 0.19 -0.6
477,452 + MPMX19_04997 0.19 -0.8
477,452 + MPMX19_04997 0.19 -0.3
477,452 + MPMX19_04997 0.19 -0.5
477,452 + MPMX19_04997 0.19 -0.2
477,452 + MPMX19_04997 0.19 +0.6
477,452 + MPMX19_04997 0.19 +0.8
477,452 + MPMX19_04997 0.19 -1.1
477,452 + MPMX19_04997 0.19 -1.2
477,453 - MPMX19_04997 0.19 -1.3
477,453 - MPMX19_04997 0.19 -0.7
477,453 - MPMX19_04997 0.19 +1.4
477,453 - MPMX19_04997 0.19 -0.5
477,453 - MPMX19_04997 0.19 -1.2
477,453 - MPMX19_04997 0.19 -0.0
477,453 - MPMX19_04997 0.19 +1.0
477,453 - MPMX19_04997 0.19 -0.7
477,453 - MPMX19_04997 0.19 -1.3
477,453 - MPMX19_04997 0.19 -1.1
477,453 - MPMX19_04997 0.19 -1.2
477,453 - MPMX19_04997 0.19 -0.2
477,453 - MPMX19_04997 0.19 +0.9
477,504 - MPMX19_04997 0.22 -1.7

Or see this region's nucleotide sequence