Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04984 and MPMX19_04985 are separated by 112 nucleotides MPMX19_04985 and MPMX19_04986 are separated by 122 nucleotides MPMX19_04986 and MPMX19_04987 are separated by 41 nucleotides
MPMX19_04984: MPMX19_04984 - Alcohol dehydrogenase [acceptor], at 460,524 to 462,173
_04984
MPMX19_04985: MPMX19_04985 - HTH-type transcriptional regulator DmlR, at 462,286 to 463,206
_04985
MPMX19_04986: MPMX19_04986 - hypothetical protein, at 463,329 to 463,973
_04986
MPMX19_04987: MPMX19_04987 - hypothetical protein, at 464,015 to 464,938
_04987
Position (kb) 462
463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 461.756 kb on - strand, within MPMX19_04984 at 461.756 kb on - strand, within MPMX19_04984 at 461.837 kb on - strand, within MPMX19_04984 at 461.912 kb on - strand, within MPMX19_04984 at 461.996 kb on - strand, within MPMX19_04984 at 462.127 kb on + strand at 462.127 kb on + strand at 462.127 kb on + strand at 462.128 kb on - strand at 462.128 kb on - strand at 462.128 kb on - strand at 462.212 kb on + strand at 462.212 kb on + strand at 462.212 kb on + strand at 462.212 kb on + strand at 462.213 kb on - strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.216 kb on - strand at 462.458 kb on + strand, within MPMX19_04985 at 462.459 kb on - strand, within MPMX19_04985 at 462.893 kb on + strand, within MPMX19_04985 at 463.172 kb on + strand at 463.172 kb on + strand at 463.172 kb on + strand at 463.173 kb on - strand at 463.173 kb on - strand at 463.173 kb on - strand at 463.242 kb on + strand at 463.243 kb on - strand at 463.243 kb on - strand at 463.243 kb on - strand at 463.243 kb on - strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.383 kb on + strand at 463.383 kb on + strand at 463.384 kb on - strand at 463.515 kb on + strand, within MPMX19_04986 at 463.515 kb on + strand, within MPMX19_04986 at 463.515 kb on + strand, within MPMX19_04986 at 463.516 kb on - strand, within MPMX19_04986 at 463.516 kb on - strand, within MPMX19_04986 at 463.695 kb on + strand, within MPMX19_04986 at 463.695 kb on + strand, within MPMX19_04986 at 463.696 kb on - strand, within MPMX19_04986 at 463.696 kb on - strand, within MPMX19_04986
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 461,756 - MPMX19_04984 0.75 -0.0 461,756 - MPMX19_04984 0.75 +0.8 461,837 - MPMX19_04984 0.80 -1.4 461,912 - MPMX19_04984 0.84 -0.1 461,996 - MPMX19_04984 0.89 -0.1 462,127 + +0.4 462,127 + +0.0 462,127 + -0.8 462,128 - +1.0 462,128 - +0.3 462,128 - -0.4 462,212 + -1.7 462,212 + +0.1 462,212 + -1.0 462,212 + -0.8 462,213 - -0.7 462,215 + -2.0 462,215 + +0.2 462,215 + -0.5 462,215 + +0.8 462,215 + -0.2 462,216 - -1.5 462,458 + MPMX19_04985 0.19 -1.3 462,459 - MPMX19_04985 0.19 -0.8 462,893 + MPMX19_04985 0.66 +0.0 463,172 + -0.1 463,172 + -2.3 463,172 + +1.5 463,173 - -0.9 463,173 - -0.8 463,173 - -0.8 463,242 + -0.7 463,243 - -0.6 463,243 - +0.6 463,243 - +0.1 463,243 - -0.2 463,353 + +0.9 463,353 + +1.5 463,353 + +0.2 463,353 + +0.9 463,353 + -1.2 463,353 + -0.4 463,353 + -0.5 463,353 + -1.7 463,353 + -1.2 463,353 + -0.1 463,353 + -0.5 463,353 + -0.2 463,353 + +0.8 463,353 + -1.4 463,353 + -0.4 463,353 + -0.9 463,354 - +0.8 463,354 - -0.5 463,354 - -0.2 463,354 - -0.4 463,354 - -0.2 463,354 - +0.1 463,354 - -0.2 463,354 - -2.9 463,383 + +0.2 463,383 + -0.8 463,384 - -1.5 463,515 + MPMX19_04986 0.29 -0.3 463,515 + MPMX19_04986 0.29 +0.2 463,515 + MPMX19_04986 0.29 -1.4 463,516 - MPMX19_04986 0.29 -1.2 463,516 - MPMX19_04986 0.29 -0.2 463,695 + MPMX19_04986 0.57 -0.6 463,695 + MPMX19_04986 0.57 +0.2 463,696 - MPMX19_04986 0.57 -2.2 463,696 - MPMX19_04986 0.57 -1.5
Or see this region's nucleotide sequence