Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04980 and MPMX19_04981 are separated by 10 nucleotides MPMX19_04981 and MPMX19_04982 are separated by 13 nucleotides
MPMX19_04980: MPMX19_04980 - hypothetical protein, at 452,613 to 454,451
_04980
MPMX19_04981: MPMX19_04981 - hypothetical protein, at 454,462 to 455,157
_04981
MPMX19_04982: MPMX19_04982 - hypothetical protein, at 455,171 to 456,856
_04982
Position (kb) 454
455
456 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 453.528 kb on + strand, within MPMX19_04980 at 453.528 kb on + strand, within MPMX19_04980 at 453.528 kb on + strand, within MPMX19_04980 at 453.528 kb on + strand, within MPMX19_04980 at 453.528 kb on + strand, within MPMX19_04980 at 453.529 kb on - strand, within MPMX19_04980 at 453.529 kb on - strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.631 kb on - strand, within MPMX19_04980 at 453.631 kb on - strand, within MPMX19_04980 at 453.631 kb on - strand, within MPMX19_04980 at 454.092 kb on + strand, within MPMX19_04980 at 454.092 kb on + strand, within MPMX19_04980 at 454.092 kb on + strand, within MPMX19_04980 at 454.093 kb on - strand, within MPMX19_04980 at 454.093 kb on - strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.329 kb on + strand at 454.329 kb on + strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.345 kb on - strand at 454.345 kb on - strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.449 kb on + strand at 454.449 kb on + strand at 454.450 kb on - strand at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.934 kb on - strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.156 kb on - strand at 455.182 kb on - strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.250 kb on - strand at 455.250 kb on - strand at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.594 kb on + strand, within MPMX19_04982 at 455.594 kb on + strand, within MPMX19_04982 at 455.595 kb on - strand, within MPMX19_04982 at 455.595 kb on - strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.657 kb on + strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.702 kb on + strand, within MPMX19_04982 at 455.702 kb on + strand, within MPMX19_04982 at 455.703 kb on - strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.997 kb on - strand, within MPMX19_04982 at 456.029 kb on + strand, within MPMX19_04982 at 456.029 kb on + strand, within MPMX19_04982 at 456.030 kb on - strand, within MPMX19_04982 at 456.030 kb on - strand, within MPMX19_04982
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 453,528 + MPMX19_04980 0.50 +0.6 453,528 + MPMX19_04980 0.50 +1.9 453,528 + MPMX19_04980 0.50 -1.8 453,528 + MPMX19_04980 0.50 +0.5 453,528 + MPMX19_04980 0.50 -2.1 453,529 - MPMX19_04980 0.50 -0.5 453,529 - MPMX19_04980 0.50 -0.4 453,630 + MPMX19_04980 0.55 -1.7 453,630 + MPMX19_04980 0.55 +0.2 453,630 + MPMX19_04980 0.55 -1.0 453,630 + MPMX19_04980 0.55 -0.5 453,630 + MPMX19_04980 0.55 +0.6 453,630 + MPMX19_04980 0.55 +0.1 453,630 + MPMX19_04980 0.55 -1.4 453,631 - MPMX19_04980 0.55 -1.4 453,631 - MPMX19_04980 0.55 +1.0 453,631 - MPMX19_04980 0.55 +0.2 454,092 + MPMX19_04980 0.80 -0.1 454,092 + MPMX19_04980 0.80 -1.0 454,092 + MPMX19_04980 0.80 +0.2 454,093 - MPMX19_04980 0.80 +0.3 454,093 - MPMX19_04980 0.80 -1.3 454,242 + MPMX19_04980 0.89 -0.6 454,242 + MPMX19_04980 0.89 +0.7 454,242 + MPMX19_04980 0.89 -0.0 454,242 + MPMX19_04980 0.89 -0.7 454,242 + MPMX19_04980 0.89 -0.3 454,243 - MPMX19_04980 0.89 -1.7 454,243 - MPMX19_04980 0.89 -3.1 454,243 - MPMX19_04980 0.89 -0.2 454,329 + -0.5 454,329 + -0.0 454,330 - +1.0 454,330 - -1.2 454,330 - -0.7 454,330 - -0.1 454,330 - +0.2 454,330 - +0.2 454,345 - +0.3 454,345 - +1.3 454,356 + -0.4 454,356 + -0.2 454,356 + -0.2 454,356 + -2.3 454,356 + -0.5 454,356 + +0.5 454,356 + -0.4 454,356 + -1.1 454,356 + +1.2 454,356 + -0.9 454,356 + +1.0 454,356 + -0.2 454,356 + -0.3 454,356 + +0.2 454,356 + +0.4 454,356 + -0.5 454,356 + +0.1 454,357 - +0.8 454,357 - -0.6 454,357 - +0.2 454,357 - -2.2 454,357 - -0.0 454,357 - -0.3 454,357 - -1.9 454,357 - -0.4 454,357 - +0.8 454,357 - -1.9 454,357 - +0.4 454,357 - +0.1 454,357 - +0.8 454,357 - +1.6 454,437 + -1.7 454,437 + -0.8 454,437 + +0.4 454,437 + -1.0 454,437 + -0.2 454,437 + -0.2 454,437 + -0.4 454,437 + -0.2 454,437 + -0.9 454,437 + -0.6 454,437 + -0.9 454,437 + +0.5 454,437 + -1.2 454,437 + +0.2 454,438 - -1.7 454,438 - -1.4 454,438 - +0.1 454,438 - -0.1 454,438 - +0.4 454,438 - -0.3 454,438 - -0.3 454,449 + -0.0 454,449 + -2.1 454,450 - +0.4 454,699 + MPMX19_04981 0.34 -0.5 454,699 + MPMX19_04981 0.34 -0.9 454,699 + MPMX19_04981 0.34 +1.2 454,699 + MPMX19_04981 0.34 +0.8 454,699 + MPMX19_04981 0.34 -0.0 454,699 + MPMX19_04981 0.34 +0.3 454,699 + MPMX19_04981 0.34 -0.5 454,699 + MPMX19_04981 0.34 +1.3 454,699 + MPMX19_04981 0.34 -2.2 454,699 + MPMX19_04981 0.34 -0.8 454,700 - MPMX19_04981 0.34 -0.7 454,700 - MPMX19_04981 0.34 -0.5 454,700 - MPMX19_04981 0.34 -0.3 454,700 - MPMX19_04981 0.34 -0.2 454,708 + MPMX19_04981 0.35 -1.2 454,708 + MPMX19_04981 0.35 -0.5 454,708 + MPMX19_04981 0.35 -1.0 454,708 + MPMX19_04981 0.35 +0.2 454,708 + MPMX19_04981 0.35 -1.2 454,708 + MPMX19_04981 0.35 -1.9 454,708 + MPMX19_04981 0.35 +0.5 454,709 - MPMX19_04981 0.35 -1.7 454,709 - MPMX19_04981 0.35 +1.0 454,709 - MPMX19_04981 0.35 -0.2 454,709 - MPMX19_04981 0.35 +0.0 454,709 - MPMX19_04981 0.35 -0.0 454,837 + MPMX19_04981 0.54 -1.4 454,837 + MPMX19_04981 0.54 -0.0 454,837 + MPMX19_04981 0.54 +0.6 454,837 + MPMX19_04981 0.54 -0.5 454,837 + MPMX19_04981 0.54 -2.9 454,837 + MPMX19_04981 0.54 +1.2 454,837 + MPMX19_04981 0.54 -0.8 454,837 + MPMX19_04981 0.54 +0.1 454,837 + MPMX19_04981 0.54 +0.6 454,837 + MPMX19_04981 0.54 +0.3 454,837 + MPMX19_04981 0.54 -0.5 454,838 - MPMX19_04981 0.54 -1.5 454,838 - MPMX19_04981 0.54 -1.8 454,838 - MPMX19_04981 0.54 -0.4 454,838 - MPMX19_04981 0.54 -1.0 454,838 - MPMX19_04981 0.54 +0.0 454,838 - MPMX19_04981 0.54 -1.2 454,934 - MPMX19_04981 0.68 -1.5 454,939 + MPMX19_04981 0.69 -1.2 454,939 + MPMX19_04981 0.69 +0.2 454,939 + MPMX19_04981 0.69 -0.2 454,939 + MPMX19_04981 0.69 -1.2 454,939 + MPMX19_04981 0.69 +0.2 454,939 + MPMX19_04981 0.69 -1.3 454,940 - MPMX19_04981 0.69 -0.8 454,940 - MPMX19_04981 0.69 +0.4 454,940 - MPMX19_04981 0.69 -0.0 455,155 + -0.0 455,155 + -0.0 455,155 + -0.4 455,155 + +0.2 455,155 + -0.1 455,155 + -0.9 455,156 - +0.6 455,182 - +0.3 455,249 + -0.4 455,249 + -0.7 455,249 + -0.7 455,249 + +0.2 455,250 - -0.4 455,250 - +0.4 455,469 + MPMX19_04982 0.18 -0.5 455,469 + MPMX19_04982 0.18 -0.5 455,469 + MPMX19_04982 0.18 -0.9 455,469 + MPMX19_04982 0.18 -1.8 455,469 + MPMX19_04982 0.18 -0.8 455,594 + MPMX19_04982 0.25 -1.0 455,594 + MPMX19_04982 0.25 -0.1 455,595 - MPMX19_04982 0.25 -2.4 455,595 - MPMX19_04982 0.25 -0.7 455,621 + MPMX19_04982 0.27 -0.2 455,621 + MPMX19_04982 0.27 +0.6 455,621 + MPMX19_04982 0.27 +0.8 455,621 + MPMX19_04982 0.27 -0.2 455,621 - MPMX19_04982 0.27 -0.0 455,622 - MPMX19_04982 0.27 +0.2 455,622 - MPMX19_04982 0.27 -1.5 455,622 - MPMX19_04982 0.27 -0.4 455,657 + MPMX19_04982 0.29 -1.5 455,658 - MPMX19_04982 0.29 -1.5 455,658 - MPMX19_04982 0.29 +0.8 455,658 - MPMX19_04982 0.29 -1.0 455,702 + MPMX19_04982 0.31 -1.4 455,702 + MPMX19_04982 0.31 -0.4 455,703 - MPMX19_04982 0.32 -0.8 455,987 + MPMX19_04982 0.48 -2.1 455,987 + MPMX19_04982 0.48 -1.4 455,987 + MPMX19_04982 0.48 -0.2 455,988 - MPMX19_04982 0.48 +0.5 455,988 - MPMX19_04982 0.48 -0.4 455,988 - MPMX19_04982 0.48 -1.1 455,997 - MPMX19_04982 0.49 +0.0 456,029 + MPMX19_04982 0.51 -0.1 456,029 + MPMX19_04982 0.51 -1.3 456,030 - MPMX19_04982 0.51 -0.5 456,030 - MPMX19_04982 0.51 -0.6
Or see this region's nucleotide sequence