Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04919 and MPMX19_04920 are separated by 34 nucleotides MPMX19_04920 and MPMX19_04921 are separated by 218 nucleotides MPMX19_04921 and MPMX19_04922 are separated by 45 nucleotides
MPMX19_04919: MPMX19_04919 - 5-aminovalerate aminotransferase DavT, at 375,407 to 376,696
_04919
MPMX19_04920: MPMX19_04920 - Succinate-semialdehyde dehydrogenase [NADP(+)] GabD, at 376,731 to 378,191
_04920
MPMX19_04921: MPMX19_04921 - HTH-type transcriptional regulator PuuR, at 378,410 to 378,976
_04921
MPMX19_04922: MPMX19_04922 - Putative 2-aminoethylphosphonate transport system permease protein PhnV, at 379,022 to 379,852
_04922
Position (kb) 376
377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.449 kb on + strand, within MPMX19_04919 at 376.450 kb on - strand, within MPMX19_04919 at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.756 kb on + strand at 376.756 kb on + strand at 376.756 kb on + strand at 376.757 kb on - strand at 376.757 kb on - strand at 376.757 kb on - strand at 376.787 kb on - strand at 376.787 kb on - strand at 376.787 kb on - strand at 376.787 kb on - strand at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.930 kb on + strand, within MPMX19_04920 at 376.930 kb on + strand, within MPMX19_04920 at 376.930 kb on + strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.936 kb on + strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.341 kb on + strand, within MPMX19_04920 at 377.342 kb on - strand, within MPMX19_04920 at 377.342 kb on - strand, within MPMX19_04920 at 377.809 kb on + strand, within MPMX19_04920 at 377.809 kb on + strand, within MPMX19_04920 at 377.809 kb on + strand, within MPMX19_04920 at 377.857 kb on + strand, within MPMX19_04920 at 377.857 kb on + strand, within MPMX19_04920 at 377.857 kb on + strand, within MPMX19_04920 at 377.858 kb on - strand, within MPMX19_04920 at 377.858 kb on - strand, within MPMX19_04920 at 377.950 kb on + strand, within MPMX19_04920 at 377.950 kb on + strand, within MPMX19_04920 at 378.148 kb on + strand at 378.148 kb on + strand at 378.148 kb on + strand at 378.149 kb on - strand at 378.149 kb on - strand at 378.149 kb on - strand at 378.218 kb on - strand at 378.218 kb on - strand at 378.304 kb on - strand at 378.335 kb on + strand at 378.335 kb on + strand at 378.335 kb on + strand at 378.336 kb on - strand at 378.336 kb on - strand at 378.336 kb on - strand at 378.336 kb on - strand at 378.345 kb on + strand at 378.345 kb on + strand at 378.383 kb on + strand at 378.384 kb on - strand at 378.756 kb on - strand, within MPMX19_04921 at 378.756 kb on - strand, within MPMX19_04921 at 378.884 kb on + strand, within MPMX19_04921 at 378.884 kb on + strand, within MPMX19_04921 at 378.884 kb on + strand, within MPMX19_04921 at 378.884 kb on + strand, within MPMX19_04921 at 378.884 kb on + strand, within MPMX19_04921 at 378.885 kb on - strand, within MPMX19_04921 at 378.968 kb on + strand at 378.968 kb on + strand at 378.968 kb on + strand at 378.968 kb on + strand at 378.969 kb on - strand at 378.969 kb on - strand at 378.969 kb on - strand at 378.996 kb on + strand at 378.996 kb on + strand at 378.996 kb on + strand at 378.997 kb on - strand at 378.997 kb on - strand at 379.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 375,804 + MPMX19_04919 0.31 -0.9 375,804 + MPMX19_04919 0.31 +0.3 375,804 + MPMX19_04919 0.31 -2.3 375,804 + MPMX19_04919 0.31 -2.4 375,804 + MPMX19_04919 0.31 +1.5 375,804 + MPMX19_04919 0.31 +0.1 375,804 + MPMX19_04919 0.31 +0.8 375,804 + MPMX19_04919 0.31 +0.2 375,804 + MPMX19_04919 0.31 -0.2 375,804 + MPMX19_04919 0.31 -2.0 375,805 - MPMX19_04919 0.31 -1.6 375,805 - MPMX19_04919 0.31 -0.6 375,805 - MPMX19_04919 0.31 -0.0 375,805 - MPMX19_04919 0.31 -0.4 375,805 - MPMX19_04919 0.31 -0.2 375,805 - MPMX19_04919 0.31 -0.2 375,805 - MPMX19_04919 0.31 -0.8 375,805 - MPMX19_04919 0.31 +0.1 375,805 - MPMX19_04919 0.31 -1.9 375,805 - MPMX19_04919 0.31 -0.9 375,805 - MPMX19_04919 0.31 -0.0 375,805 - MPMX19_04919 0.31 -0.4 375,805 - MPMX19_04919 0.31 +0.1 376,233 + MPMX19_04919 0.64 -1.0 376,233 + MPMX19_04919 0.64 +0.2 376,233 + MPMX19_04919 0.64 +0.4 376,233 + MPMX19_04919 0.64 -1.5 376,233 + MPMX19_04919 0.64 -0.7 376,234 - MPMX19_04919 0.64 +1.0 376,234 - MPMX19_04919 0.64 -1.3 376,234 - MPMX19_04919 0.64 -2.2 376,234 - MPMX19_04919 0.64 -1.4 376,449 + MPMX19_04919 0.81 -1.0 376,450 - MPMX19_04919 0.81 +1.8 376,620 + +0.1 376,620 + +0.5 376,620 + +1.3 376,620 + -0.3 376,620 + -0.3 376,620 + -1.3 376,621 - +0.0 376,621 - -3.1 376,621 - -0.1 376,621 - +0.5 376,621 - -0.5 376,621 - +0.3 376,621 - +0.4 376,621 - +0.8 376,621 - -0.3 376,621 - -0.2 376,621 - +1.2 376,756 + -0.8 376,756 + +0.5 376,756 + -0.5 376,757 - -0.2 376,757 - +0.1 376,757 - -0.1 376,787 - -1.0 376,787 - -1.4 376,787 - -0.2 376,787 - +0.8 376,883 - MPMX19_04920 0.10 +0.4 376,883 - MPMX19_04920 0.10 -0.5 376,883 - MPMX19_04920 0.10 -0.2 376,883 - MPMX19_04920 0.10 +0.1 376,883 - MPMX19_04920 0.10 -1.7 376,883 - MPMX19_04920 0.10 +0.2 376,883 - MPMX19_04920 0.10 -1.5 376,930 + MPMX19_04920 0.14 +0.4 376,930 + MPMX19_04920 0.14 -1.9 376,930 + MPMX19_04920 0.14 +0.2 376,931 - MPMX19_04920 0.14 -0.8 376,931 - MPMX19_04920 0.14 -0.6 376,931 - MPMX19_04920 0.14 +1.0 376,931 - MPMX19_04920 0.14 -1.6 376,936 + MPMX19_04920 0.14 -0.8 376,937 - MPMX19_04920 0.14 -0.8 376,937 - MPMX19_04920 0.14 -0.6 376,937 - MPMX19_04920 0.14 -0.2 376,937 - MPMX19_04920 0.14 -1.0 377,281 + MPMX19_04920 0.38 -0.7 377,281 + MPMX19_04920 0.38 -1.8 377,281 + MPMX19_04920 0.38 -2.2 377,281 + MPMX19_04920 0.38 -1.5 377,282 - MPMX19_04920 0.38 -0.7 377,282 - MPMX19_04920 0.38 -1.7 377,282 - MPMX19_04920 0.38 -0.2 377,282 - MPMX19_04920 0.38 +0.3 377,282 - MPMX19_04920 0.38 -2.2 377,282 - MPMX19_04920 0.38 +1.4 377,282 - MPMX19_04920 0.38 -0.5 377,282 - MPMX19_04920 0.38 -0.3 377,282 - MPMX19_04920 0.38 -1.9 377,341 + MPMX19_04920 0.42 -0.7 377,342 - MPMX19_04920 0.42 +0.2 377,342 - MPMX19_04920 0.42 -1.3 377,809 + MPMX19_04920 0.74 +0.5 377,809 + MPMX19_04920 0.74 -0.9 377,809 + MPMX19_04920 0.74 +0.2 377,857 + MPMX19_04920 0.77 -0.1 377,857 + MPMX19_04920 0.77 -0.2 377,857 + MPMX19_04920 0.77 -1.0 377,858 - MPMX19_04920 0.77 -0.8 377,858 - MPMX19_04920 0.77 -0.8 377,950 + MPMX19_04920 0.83 -0.9 377,950 + MPMX19_04920 0.83 -2.2 378,148 + +1.2 378,148 + +0.4 378,148 + -0.0 378,149 - -1.8 378,149 - +0.6 378,149 - +0.3 378,218 - -1.5 378,218 - -0.6 378,304 - -1.1 378,335 + -0.3 378,335 + +0.6 378,335 + -0.4 378,336 - -0.8 378,336 - -0.8 378,336 - +0.1 378,336 - +1.2 378,345 + -0.5 378,345 + +0.2 378,383 + -1.2 378,384 - -1.6 378,756 - MPMX19_04921 0.61 -0.0 378,756 - MPMX19_04921 0.61 +0.2 378,884 + MPMX19_04921 0.84 -0.9 378,884 + MPMX19_04921 0.84 +0.2 378,884 + MPMX19_04921 0.84 +0.4 378,884 + MPMX19_04921 0.84 -0.4 378,884 + MPMX19_04921 0.84 -1.0 378,885 - MPMX19_04921 0.84 -2.5 378,968 + -2.2 378,968 + -0.9 378,968 + +0.2 378,968 + -1.4 378,969 - -0.4 378,969 - -0.8 378,969 - +0.1 378,996 + -0.7 378,996 + +1.0 378,996 + -1.8 378,997 - -1.0 378,997 - -0.4 379,024 - -0.8
Or see this region's nucleotide sequence