Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04862 and MPMX19_04863 are separated by 18 nucleotides MPMX19_04863 and MPMX19_04864 are separated by 76 nucleotides MPMX19_04864 and MPMX19_04865 overlap by 1 nucleotides
MPMX19_04862: MPMX19_04862 - hypothetical protein, at 300,205 to 301,752
_04862
MPMX19_04863: MPMX19_04863 - Transcriptional regulatory protein LnrK, at 301,771 to 302,505
_04863
MPMX19_04864: MPMX19_04864 - hypothetical protein, at 302,582 to 302,680
_04864
MPMX19_04865: MPMX19_04865 - Sensor histidine kinase RcsC, at 302,680 to 304,167
_04865
Position (kb) 302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 301.750 kb on + strand at 301.750 kb on + strand at 301.750 kb on + strand at 301.750 kb on + strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 302.279 kb on + strand, within MPMX19_04863 at 302.279 kb on + strand, within MPMX19_04863 at 302.279 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.367 kb on - strand, within MPMX19_04863 at 302.532 kb on - strand at 302.539 kb on + strand at 302.540 kb on - strand at 302.540 kb on - strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.604 kb on - strand, within MPMX19_04864 at 302.604 kb on - strand, within MPMX19_04864 at 302.984 kb on + strand, within MPMX19_04865 at 302.984 kb on + strand, within MPMX19_04865 at 302.984 kb on + strand, within MPMX19_04865 at 302.984 kb on + strand, within MPMX19_04865 at 302.985 kb on - strand, within MPMX19_04865 at 302.985 kb on - strand, within MPMX19_04865 at 302.985 kb on - strand, within MPMX19_04865 at 302.985 kb on - strand, within MPMX19_04865 at 302.985 kb on - strand, within MPMX19_04865 at 303.496 kb on + strand, within MPMX19_04865 at 303.496 kb on + strand, within MPMX19_04865 at 303.496 kb on + strand, within MPMX19_04865 at 303.496 kb on + strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 301,750 + -0.0 301,750 + -0.0 301,750 + -0.3 301,750 + -0.2 301,751 - +0.8 301,751 - +1.0 301,751 - -0.8 301,751 - +1.1 301,751 - -1.0 302,279 + MPMX19_04863 0.69 +0.5 302,279 + MPMX19_04863 0.69 -0.7 302,279 + MPMX19_04863 0.69 -0.2 302,366 + MPMX19_04863 0.81 +1.1 302,366 + MPMX19_04863 0.81 +0.8 302,366 + MPMX19_04863 0.81 -0.9 302,367 - MPMX19_04863 0.81 +0.8 302,532 - -1.9 302,539 + +0.4 302,540 - -0.0 302,540 - -0.0 302,583 + +0.3 302,583 + -1.2 302,583 + +0.3 302,583 + +0.3 302,583 + -0.5 302,583 + +0.1 302,583 + -0.3 302,584 - -0.2 302,584 - -2.4 302,584 - -1.4 302,584 - -0.8 302,584 - +0.5 302,584 - -0.7 302,584 - -0.9 302,584 - +0.3 302,584 - -0.1 302,584 - +0.8 302,603 + MPMX19_04864 0.21 -0.3 302,603 + MPMX19_04864 0.21 -2.5 302,603 + MPMX19_04864 0.21 -0.6 302,603 + MPMX19_04864 0.21 -0.6 302,604 - MPMX19_04864 0.22 -0.8 302,604 - MPMX19_04864 0.22 -3.1 302,984 + MPMX19_04865 0.20 -0.5 302,984 + MPMX19_04865 0.20 -0.6 302,984 + MPMX19_04865 0.20 -0.1 302,984 + MPMX19_04865 0.20 -1.0 302,985 - MPMX19_04865 0.20 -1.1 302,985 - MPMX19_04865 0.20 -0.4 302,985 - MPMX19_04865 0.20 -1.4 302,985 - MPMX19_04865 0.20 -0.8 302,985 - MPMX19_04865 0.20 +1.1 303,496 + MPMX19_04865 0.55 -1.9 303,496 + MPMX19_04865 0.55 -0.8 303,496 + MPMX19_04865 0.55 -1.9 303,496 + MPMX19_04865 0.55 -0.2 303,497 - MPMX19_04865 0.55 -0.4 303,497 - MPMX19_04865 0.55 -0.5 303,497 - MPMX19_04865 0.55 -2.6 303,497 - MPMX19_04865 0.55 -0.2 303,497 - MPMX19_04865 0.55 +0.5 303,497 - MPMX19_04865 0.55 -0.5 303,497 - MPMX19_04865 0.55 +1.4
Or see this region's nucleotide sequence