Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04860 and MPMX19_04861 are separated by 130 nucleotides MPMX19_04861 and MPMX19_04862 are separated by 272 nucleotides MPMX19_04862 and MPMX19_04863 are separated by 18 nucleotides MPMX19_04863 and MPMX19_04864 are separated by 76 nucleotides MPMX19_04864 and MPMX19_04865 overlap by 1 nucleotides
MPMX19_04860: MPMX19_04860 - Type I secretion system membrane fusion protein PrsE, at 298,216 to 299,538
_04860
MPMX19_04861: MPMX19_04861 - hypothetical protein, at 299,669 to 299,932
_04861
MPMX19_04862: MPMX19_04862 - hypothetical protein, at 300,205 to 301,752
_04862
MPMX19_04863: MPMX19_04863 - Transcriptional regulatory protein LnrK, at 301,771 to 302,505
_04863
MPMX19_04864: MPMX19_04864 - hypothetical protein, at 302,582 to 302,680
_04864
MPMX19_04865: MPMX19_04865 - Sensor histidine kinase RcsC, at 302,680 to 304,167
_04865
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 299.278 kb on + strand, within MPMX19_04860 at 299.279 kb on - strand, within MPMX19_04860 at 299.279 kb on - strand, within MPMX19_04860 at 299.294 kb on - strand, within MPMX19_04860 at 299.362 kb on + strand, within MPMX19_04860 at 299.362 kb on + strand, within MPMX19_04860 at 299.363 kb on - strand, within MPMX19_04860 at 299.363 kb on - strand, within MPMX19_04860 at 299.363 kb on - strand, within MPMX19_04860 at 299.363 kb on - strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.485 kb on + strand at 299.486 kb on - strand at 299.486 kb on - strand at 299.486 kb on - strand at 299.486 kb on - strand at 299.486 kb on - strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.662 kb on + strand at 299.663 kb on - strand at 299.663 kb on - strand at 299.673 kb on + strand at 299.769 kb on + strand, within MPMX19_04861 at 299.769 kb on + strand, within MPMX19_04861 at 299.770 kb on - strand, within MPMX19_04861 at 299.770 kb on - strand, within MPMX19_04861 at 299.770 kb on - strand, within MPMX19_04861 at 299.970 kb on + strand at 299.970 kb on + strand at 299.970 kb on + strand at 299.979 kb on + strand at 299.980 kb on - strand at 299.980 kb on - strand at 299.980 kb on - strand at 299.980 kb on - strand at 300.127 kb on + strand at 300.127 kb on + strand at 300.127 kb on + strand at 300.127 kb on + strand at 300.127 kb on + strand at 300.128 kb on - strand at 300.128 kb on - strand at 300.128 kb on - strand at 300.128 kb on - strand at 300.128 kb on - strand at 300.139 kb on + strand at 300.139 kb on + strand at 300.139 kb on + strand at 300.140 kb on - strand at 300.164 kb on + strand at 300.165 kb on - strand at 300.165 kb on - strand at 300.168 kb on + strand at 300.952 kb on + strand, within MPMX19_04862 at 300.952 kb on + strand, within MPMX19_04862 at 300.952 kb on + strand, within MPMX19_04862 at 300.952 kb on + strand, within MPMX19_04862 at 300.952 kb on + strand, within MPMX19_04862 at 300.953 kb on - strand, within MPMX19_04862 at 300.953 kb on - strand, within MPMX19_04862 at 300.953 kb on - strand, within MPMX19_04862 at 300.953 kb on - strand, within MPMX19_04862 at 301.178 kb on - strand, within MPMX19_04862 at 301.178 kb on - strand, within MPMX19_04862 at 301.178 kb on - strand, within MPMX19_04862 at 301.468 kb on + strand, within MPMX19_04862 at 301.468 kb on + strand, within MPMX19_04862 at 301.468 kb on + strand, within MPMX19_04862 at 301.469 kb on - strand, within MPMX19_04862 at 301.469 kb on - strand, within MPMX19_04862 at 301.469 kb on - strand, within MPMX19_04862 at 301.750 kb on + strand at 301.750 kb on + strand at 301.750 kb on + strand at 301.750 kb on + strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 302.279 kb on + strand, within MPMX19_04863 at 302.279 kb on + strand, within MPMX19_04863 at 302.279 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.367 kb on - strand, within MPMX19_04863 at 302.532 kb on - strand at 302.539 kb on + strand at 302.540 kb on - strand at 302.540 kb on - strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.604 kb on - strand, within MPMX19_04864 at 302.604 kb on - strand, within MPMX19_04864
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 299,278 + MPMX19_04860 0.80 +0.2 299,279 - MPMX19_04860 0.80 +0.5 299,279 - MPMX19_04860 0.80 +1.1 299,294 - MPMX19_04860 0.81 -0.6 299,362 + MPMX19_04860 0.87 +1.1 299,362 + MPMX19_04860 0.87 +0.3 299,363 - MPMX19_04860 0.87 -0.2 299,363 - MPMX19_04860 0.87 -1.9 299,363 - MPMX19_04860 0.87 +0.1 299,363 - MPMX19_04860 0.87 -1.0 299,365 + MPMX19_04860 0.87 -0.2 299,365 + MPMX19_04860 0.87 -1.0 299,365 + MPMX19_04860 0.87 -1.4 299,365 + MPMX19_04860 0.87 +0.1 299,365 + MPMX19_04860 0.87 -0.0 299,365 + MPMX19_04860 0.87 -2.1 299,365 + MPMX19_04860 0.87 -0.6 299,365 + MPMX19_04860 0.87 -1.4 299,365 + MPMX19_04860 0.87 -0.0 299,365 + MPMX19_04860 0.87 -1.1 299,365 + MPMX19_04860 0.87 -1.2 299,365 + MPMX19_04860 0.87 +0.7 299,366 - MPMX19_04860 0.87 +0.5 299,366 - MPMX19_04860 0.87 +0.1 299,366 - MPMX19_04860 0.87 -0.9 299,366 - MPMX19_04860 0.87 -0.5 299,366 - MPMX19_04860 0.87 -1.9 299,366 - MPMX19_04860 0.87 -0.2 299,366 - MPMX19_04860 0.87 -0.2 299,366 - MPMX19_04860 0.87 +0.5 299,366 - MPMX19_04860 0.87 -1.0 299,366 - MPMX19_04860 0.87 -0.2 299,366 - MPMX19_04860 0.87 -0.5 299,366 - MPMX19_04860 0.87 -0.9 299,485 + -0.8 299,486 - -0.2 299,486 - +0.6 299,486 - -0.4 299,486 - -1.0 299,486 - +0.3 299,503 + -0.1 299,503 + -0.5 299,503 + +0.8 299,503 + +0.2 299,503 + +0.4 299,503 + +0.3 299,503 + -2.1 299,504 - -0.2 299,504 - +0.1 299,504 - +0.2 299,504 - -1.1 299,504 - -1.4 299,504 - +0.4 299,504 - +0.6 299,504 - -1.5 299,662 + -0.4 299,663 - +0.2 299,663 - -1.0 299,673 + -0.0 299,769 + MPMX19_04861 0.38 +0.3 299,769 + MPMX19_04861 0.38 -1.7 299,770 - MPMX19_04861 0.38 -1.1 299,770 - MPMX19_04861 0.38 -1.4 299,770 - MPMX19_04861 0.38 -1.0 299,970 + -1.5 299,970 + -0.8 299,970 + -2.2 299,979 + -0.0 299,980 - -0.7 299,980 - -0.1 299,980 - -0.8 299,980 - -0.5 300,127 + +0.4 300,127 + +0.4 300,127 + -0.1 300,127 + +1.2 300,127 + +0.8 300,128 - -1.4 300,128 - -2.7 300,128 - -0.4 300,128 - +1.1 300,128 - -0.5 300,139 + -1.0 300,139 + -1.4 300,139 + -0.4 300,140 - -0.5 300,164 + -0.9 300,165 - -1.4 300,165 - -2.0 300,168 + -1.2 300,952 + MPMX19_04862 0.48 +0.8 300,952 + MPMX19_04862 0.48 -0.8 300,952 + MPMX19_04862 0.48 -0.7 300,952 + MPMX19_04862 0.48 -1.1 300,952 + MPMX19_04862 0.48 -2.4 300,953 - MPMX19_04862 0.48 -0.5 300,953 - MPMX19_04862 0.48 +1.5 300,953 - MPMX19_04862 0.48 +0.0 300,953 - MPMX19_04862 0.48 -1.9 301,178 - MPMX19_04862 0.63 -0.7 301,178 - MPMX19_04862 0.63 -0.5 301,178 - MPMX19_04862 0.63 -0.0 301,468 + MPMX19_04862 0.82 +1.1 301,468 + MPMX19_04862 0.82 -0.0 301,468 + MPMX19_04862 0.82 -1.2 301,469 - MPMX19_04862 0.82 -0.9 301,469 - MPMX19_04862 0.82 -1.4 301,469 - MPMX19_04862 0.82 +1.2 301,750 + -0.0 301,750 + -0.0 301,750 + -0.3 301,750 + -0.2 301,751 - +0.8 301,751 - +1.0 301,751 - -0.8 301,751 - +1.1 301,751 - -1.0 302,279 + MPMX19_04863 0.69 +0.5 302,279 + MPMX19_04863 0.69 -0.7 302,279 + MPMX19_04863 0.69 -0.2 302,366 + MPMX19_04863 0.81 +1.1 302,366 + MPMX19_04863 0.81 +0.8 302,366 + MPMX19_04863 0.81 -0.9 302,367 - MPMX19_04863 0.81 +0.8 302,532 - -1.9 302,539 + +0.4 302,540 - -0.0 302,540 - -0.0 302,583 + +0.3 302,583 + -1.2 302,583 + +0.3 302,583 + +0.3 302,583 + -0.5 302,583 + +0.1 302,583 + -0.3 302,584 - -0.2 302,584 - -2.4 302,584 - -1.4 302,584 - -0.8 302,584 - +0.5 302,584 - -0.7 302,584 - -0.9 302,584 - +0.3 302,584 - -0.1 302,584 - +0.8 302,603 + MPMX19_04864 0.21 -0.3 302,603 + MPMX19_04864 0.21 -2.5 302,603 + MPMX19_04864 0.21 -0.6 302,603 + MPMX19_04864 0.21 -0.6 302,604 - MPMX19_04864 0.22 -0.8 302,604 - MPMX19_04864 0.22 -3.1
Or see this region's nucleotide sequence