Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04858 and MPMX19_04859 are separated by 339 nucleotides MPMX19_04859 and MPMX19_04860 are separated by 51 nucleotides
MPMX19_04858: MPMX19_04858 - hypothetical protein, at 275,071 to 293,739
_04858
MPMX19_04859: MPMX19_04859 - Vitamin B12 import ATP-binding protein BtuD, at 294,079 to 298,164
_04859
MPMX19_04860: MPMX19_04860 - Type I secretion system membrane fusion protein PrsE, at 298,216 to 299,538
_04860
Position (kb) 294
295
296
297
298
299 Strain fitness (log2 ratio) -2
-1
0
1
2 at 293.306 kb on + strand at 293.306 kb on + strand at 293.306 kb on + strand at 293.306 kb on + strand at 293.307 kb on - strand at 293.307 kb on - strand at 293.564 kb on + strand at 293.579 kb on + strand at 293.579 kb on + strand at 293.579 kb on + strand at 293.579 kb on + strand at 293.579 kb on + strand at 293.580 kb on - strand at 293.580 kb on - strand at 293.580 kb on - strand at 293.589 kb on + strand at 293.612 kb on - strand at 293.752 kb on + strand at 293.752 kb on + strand at 293.752 kb on + strand at 293.752 kb on + strand at 293.753 kb on - strand at 293.753 kb on - strand at 293.753 kb on - strand at 293.794 kb on + strand at 293.795 kb on - strand at 293.795 kb on - strand at 293.801 kb on + strand at 293.801 kb on + strand at 293.802 kb on - strand at 294.003 kb on - strand at 294.003 kb on - strand at 294.014 kb on + strand at 294.014 kb on + strand at 294.018 kb on + strand at 294.019 kb on - strand at 294.024 kb on + strand at 294.024 kb on + strand at 294.024 kb on + strand at 294.025 kb on - strand at 294.031 kb on + strand at 294.031 kb on + strand at 294.031 kb on + strand at 294.032 kb on - strand at 294.043 kb on + strand at 294.043 kb on + strand at 294.044 kb on - strand at 294.055 kb on - strand at 294.304 kb on + strand at 294.304 kb on + strand at 294.305 kb on - strand at 294.305 kb on - strand at 294.305 kb on - strand at 294.305 kb on - strand at 294.305 kb on - strand at 294.305 kb on - strand at 294.331 kb on + strand at 294.332 kb on - strand at 294.332 kb on - strand at 294.332 kb on - strand at 294.532 kb on + strand, within MPMX19_04859 at 294.532 kb on + strand, within MPMX19_04859 at 294.533 kb on - strand, within MPMX19_04859 at 294.533 kb on - strand, within MPMX19_04859 at 294.533 kb on - strand, within MPMX19_04859 at 294.613 kb on + strand, within MPMX19_04859 at 294.613 kb on + strand, within MPMX19_04859 at 294.613 kb on + strand, within MPMX19_04859 at 294.613 kb on + strand, within MPMX19_04859 at 294.613 kb on + strand, within MPMX19_04859 at 294.614 kb on - strand, within MPMX19_04859 at 294.614 kb on - strand, within MPMX19_04859 at 294.614 kb on - strand, within MPMX19_04859 at 295.237 kb on + strand, within MPMX19_04859 at 295.444 kb on + strand, within MPMX19_04859 at 295.444 kb on + strand, within MPMX19_04859 at 295.444 kb on + strand, within MPMX19_04859 at 295.444 kb on + strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.586 kb on - strand, within MPMX19_04859 at 295.586 kb on - strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.314 kb on + strand, within MPMX19_04859 at 296.314 kb on + strand, within MPMX19_04859 at 296.314 kb on + strand, within MPMX19_04859 at 296.314 kb on + strand, within MPMX19_04859 at 296.314 kb on + strand, within MPMX19_04859 at 296.315 kb on - strand, within MPMX19_04859 at 296.315 kb on - strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.333 kb on - strand, within MPMX19_04859 at 296.333 kb on - strand, within MPMX19_04859 at 296.333 kb on - strand, within MPMX19_04859 at 296.333 kb on - strand, within MPMX19_04859 at 296.333 kb on - strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.801 kb on - strand, within MPMX19_04859 at 296.801 kb on - strand, within MPMX19_04859 at 296.801 kb on - strand, within MPMX19_04859 at 297.022 kb on + strand, within MPMX19_04859 at 297.243 kb on + strand, within MPMX19_04859 at 297.243 kb on + strand, within MPMX19_04859 at 297.243 kb on + strand, within MPMX19_04859 at 297.243 kb on + strand, within MPMX19_04859 at 297.243 kb on + strand, within MPMX19_04859 at 297.244 kb on - strand, within MPMX19_04859 at 297.244 kb on - strand, within MPMX19_04859 at 297.244 kb on - strand, within MPMX19_04859 at 297.244 kb on - strand, within MPMX19_04859 at 297.244 kb on - strand, within MPMX19_04859 at 297.518 kb on - strand, within MPMX19_04859 at 297.518 kb on - strand, within MPMX19_04859 at 297.601 kb on + strand, within MPMX19_04859 at 297.601 kb on + strand, within MPMX19_04859 at 297.601 kb on + strand, within MPMX19_04859 at 297.602 kb on - strand, within MPMX19_04859 at 297.602 kb on - strand, within MPMX19_04859 at 297.602 kb on - strand, within MPMX19_04859 at 297.628 kb on + strand, within MPMX19_04859 at 297.628 kb on + strand, within MPMX19_04859 at 297.629 kb on - strand, within MPMX19_04859 at 297.629 kb on - strand, within MPMX19_04859 at 297.629 kb on - strand, within MPMX19_04859 at 297.629 kb on - strand, within MPMX19_04859 at 297.823 kb on + strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.824 kb on - strand at 297.824 kb on - strand at 297.824 kb on - strand at 297.824 kb on - strand at 297.824 kb on - strand at 297.824 kb on - strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.078 kb on - strand at 298.078 kb on - strand at 298.078 kb on - strand at 298.078 kb on - strand at 298.078 kb on - strand at 298.078 kb on - strand at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 293,306 + +0.5 293,306 + -1.2 293,306 + -1.0 293,306 + +2.3 293,307 - +0.0 293,307 - -0.5 293,564 + +0.4 293,579 + +0.8 293,579 + -0.3 293,579 + -0.2 293,579 + +0.5 293,579 + +0.8 293,580 - +0.2 293,580 - -0.3 293,580 - +0.5 293,589 + +0.1 293,612 - -1.4 293,752 + -0.1 293,752 + +0.8 293,752 + -0.9 293,752 + -2.7 293,753 - -0.6 293,753 - -0.1 293,753 - +1.1 293,794 + -0.8 293,795 - -0.5 293,795 - -0.0 293,801 + +0.2 293,801 + +1.6 293,802 - -1.2 294,003 - -0.5 294,003 - +0.6 294,014 + -0.0 294,014 + -0.8 294,018 + +0.2 294,019 - -0.4 294,024 + -1.4 294,024 + -0.2 294,024 + +1.8 294,025 - +0.9 294,031 + +0.2 294,031 + -0.9 294,031 + -0.4 294,032 - -0.8 294,043 + +0.5 294,043 + -1.1 294,044 - -0.2 294,055 - -1.2 294,304 + -0.0 294,304 + -0.1 294,305 - -0.2 294,305 - -0.4 294,305 - +0.2 294,305 - -0.5 294,305 - -0.4 294,305 - -1.4 294,331 + -0.0 294,332 - -0.5 294,332 - -0.8 294,332 - -0.8 294,532 + MPMX19_04859 0.11 -0.8 294,532 + MPMX19_04859 0.11 +0.4 294,533 - MPMX19_04859 0.11 -0.8 294,533 - MPMX19_04859 0.11 -0.8 294,533 - MPMX19_04859 0.11 -0.4 294,613 + MPMX19_04859 0.13 -0.4 294,613 + MPMX19_04859 0.13 -1.0 294,613 + MPMX19_04859 0.13 -0.8 294,613 + MPMX19_04859 0.13 -1.0 294,613 + MPMX19_04859 0.13 -0.5 294,614 - MPMX19_04859 0.13 -0.7 294,614 - MPMX19_04859 0.13 -0.4 294,614 - MPMX19_04859 0.13 -1.1 295,237 + MPMX19_04859 0.28 -1.8 295,444 + MPMX19_04859 0.33 +0.8 295,444 + MPMX19_04859 0.33 -1.5 295,444 + MPMX19_04859 0.33 -0.5 295,444 + MPMX19_04859 0.33 +0.7 295,445 - MPMX19_04859 0.33 +0.8 295,445 - MPMX19_04859 0.33 -0.5 295,445 - MPMX19_04859 0.33 +0.2 295,445 - MPMX19_04859 0.33 -0.6 295,445 - MPMX19_04859 0.33 -0.2 295,445 - MPMX19_04859 0.33 -0.7 295,445 - MPMX19_04859 0.33 +0.2 295,586 - MPMX19_04859 0.37 -0.1 295,586 - MPMX19_04859 0.37 -0.7 296,239 + MPMX19_04859 0.53 -1.4 296,239 + MPMX19_04859 0.53 -0.4 296,239 + MPMX19_04859 0.53 -0.5 296,239 + MPMX19_04859 0.53 -0.5 296,239 + MPMX19_04859 0.53 +0.7 296,239 + MPMX19_04859 0.53 -0.9 296,239 + MPMX19_04859 0.53 -1.0 296,240 - MPMX19_04859 0.53 +0.6 296,240 - MPMX19_04859 0.53 -0.7 296,240 - MPMX19_04859 0.53 +1.5 296,240 - MPMX19_04859 0.53 -0.9 296,240 - MPMX19_04859 0.53 +0.4 296,240 - MPMX19_04859 0.53 -1.4 296,240 - MPMX19_04859 0.53 -0.3 296,240 - MPMX19_04859 0.53 +0.9 296,240 - MPMX19_04859 0.53 +0.1 296,240 - MPMX19_04859 0.53 +0.1 296,314 + MPMX19_04859 0.55 -0.2 296,314 + MPMX19_04859 0.55 -0.4 296,314 + MPMX19_04859 0.55 -0.2 296,314 + MPMX19_04859 0.55 -1.0 296,314 + MPMX19_04859 0.55 +1.3 296,315 - MPMX19_04859 0.55 +1.3 296,315 - MPMX19_04859 0.55 +0.3 296,332 + MPMX19_04859 0.55 +1.5 296,332 + MPMX19_04859 0.55 -0.1 296,332 + MPMX19_04859 0.55 +0.7 296,332 + MPMX19_04859 0.55 +0.1 296,332 + MPMX19_04859 0.55 -0.5 296,332 + MPMX19_04859 0.55 +1.8 296,333 - MPMX19_04859 0.55 -0.7 296,333 - MPMX19_04859 0.55 +0.8 296,333 - MPMX19_04859 0.55 -0.0 296,333 - MPMX19_04859 0.55 -1.9 296,333 - MPMX19_04859 0.55 -0.0 296,404 + MPMX19_04859 0.57 -1.5 296,404 + MPMX19_04859 0.57 -0.0 296,404 + MPMX19_04859 0.57 +0.1 296,404 + MPMX19_04859 0.57 -0.9 296,404 + MPMX19_04859 0.57 -0.8 296,404 + MPMX19_04859 0.57 -0.3 296,405 - MPMX19_04859 0.57 -0.5 296,405 - MPMX19_04859 0.57 -1.2 296,405 - MPMX19_04859 0.57 -0.1 296,405 - MPMX19_04859 0.57 +0.2 296,405 - MPMX19_04859 0.57 -1.0 296,405 - MPMX19_04859 0.57 -1.2 296,405 - MPMX19_04859 0.57 -0.5 296,405 - MPMX19_04859 0.57 +1.1 296,491 + MPMX19_04859 0.59 -2.2 296,491 + MPMX19_04859 0.59 +0.5 296,491 + MPMX19_04859 0.59 +1.3 296,491 + MPMX19_04859 0.59 +0.1 296,491 + MPMX19_04859 0.59 -1.9 296,491 + MPMX19_04859 0.59 -0.8 296,491 + MPMX19_04859 0.59 +1.0 296,491 + MPMX19_04859 0.59 -0.4 296,491 + MPMX19_04859 0.59 -2.1 296,492 - MPMX19_04859 0.59 -2.1 296,492 - MPMX19_04859 0.59 +0.1 296,492 - MPMX19_04859 0.59 -0.2 296,492 - MPMX19_04859 0.59 -0.8 296,492 - MPMX19_04859 0.59 -0.8 296,492 - MPMX19_04859 0.59 +0.6 296,492 - MPMX19_04859 0.59 +0.2 296,800 + MPMX19_04859 0.67 +0.2 296,800 + MPMX19_04859 0.67 +1.3 296,800 + MPMX19_04859 0.67 +0.7 296,800 + MPMX19_04859 0.67 +0.7 296,800 + MPMX19_04859 0.67 -1.7 296,800 + MPMX19_04859 0.67 -1.0 296,800 + MPMX19_04859 0.67 -0.1 296,800 + MPMX19_04859 0.67 -0.4 296,800 + MPMX19_04859 0.67 -0.9 296,801 - MPMX19_04859 0.67 -0.3 296,801 - MPMX19_04859 0.67 +0.1 296,801 - MPMX19_04859 0.67 -1.2 297,022 + MPMX19_04859 0.72 +0.7 297,243 + MPMX19_04859 0.77 +1.4 297,243 + MPMX19_04859 0.77 -1.5 297,243 + MPMX19_04859 0.77 +0.2 297,243 + MPMX19_04859 0.77 +0.0 297,243 + MPMX19_04859 0.77 -0.5 297,244 - MPMX19_04859 0.77 -2.5 297,244 - MPMX19_04859 0.77 -0.0 297,244 - MPMX19_04859 0.77 -1.9 297,244 - MPMX19_04859 0.77 -1.3 297,244 - MPMX19_04859 0.77 +0.3 297,518 - MPMX19_04859 0.84 -1.4 297,518 - MPMX19_04859 0.84 +0.5 297,601 + MPMX19_04859 0.86 +0.1 297,601 + MPMX19_04859 0.86 +0.1 297,601 + MPMX19_04859 0.86 +0.7 297,602 - MPMX19_04859 0.86 +0.6 297,602 - MPMX19_04859 0.86 +1.6 297,602 - MPMX19_04859 0.86 +0.8 297,628 + MPMX19_04859 0.87 +1.8 297,628 + MPMX19_04859 0.87 +1.1 297,629 - MPMX19_04859 0.87 -0.0 297,629 - MPMX19_04859 0.87 -0.7 297,629 - MPMX19_04859 0.87 -1.8 297,629 - MPMX19_04859 0.87 -1.2 297,823 + -0.1 297,823 + +0.2 297,823 + +0.1 297,823 + -0.2 297,824 - +0.2 297,824 - +1.3 297,824 - +0.8 297,824 - -1.0 297,824 - -0.4 297,824 - -0.2 298,077 + -0.1 298,077 + +1.0 298,077 + +0.1 298,078 - -1.9 298,078 - -0.0 298,078 - -1.4 298,078 - -0.0 298,078 - -0.5 298,078 - -0.5 298,672 + MPMX19_04860 0.34 -0.7 298,672 + MPMX19_04860 0.34 +0.2 298,672 + MPMX19_04860 0.34 +0.4 298,672 + MPMX19_04860 0.34 -1.0 298,672 + MPMX19_04860 0.34 -0.0 298,672 + MPMX19_04860 0.34 +0.5 298,672 + MPMX19_04860 0.34 -0.1 298,673 - MPMX19_04860 0.35 +0.2 298,673 - MPMX19_04860 0.35 -0.6 298,673 - MPMX19_04860 0.35 -0.7 298,673 - MPMX19_04860 0.35 +0.8 298,673 - MPMX19_04860 0.35 -0.5 298,673 - MPMX19_04860 0.35 -0.2 298,673 - MPMX19_04860 0.35 -0.4 298,673 - MPMX19_04860 0.35 -0.3 298,673 - MPMX19_04860 0.35 +0.2 298,673 - MPMX19_04860 0.35 -0.2 298,756 + MPMX19_04860 0.41 +0.3 298,756 + MPMX19_04860 0.41 -0.1 298,756 + MPMX19_04860 0.41 +1.0 298,756 + MPMX19_04860 0.41 +1.5 298,756 + MPMX19_04860 0.41 -1.4 298,756 + MPMX19_04860 0.41 -1.1 298,756 + MPMX19_04860 0.41 +0.4 298,756 + MPMX19_04860 0.41 +0.2 298,756 + MPMX19_04860 0.41 +0.5 298,756 + MPMX19_04860 0.41 -1.9 298,756 + MPMX19_04860 0.41 +0.3 298,756 + MPMX19_04860 0.41 -0.2 298,756 + MPMX19_04860 0.41 -1.8 298,757 - MPMX19_04860 0.41 +0.2 298,757 - MPMX19_04860 0.41 -1.1 298,757 - MPMX19_04860 0.41 -0.5 298,757 - MPMX19_04860 0.41 -0.1 298,757 - MPMX19_04860 0.41 -1.0 298,757 - MPMX19_04860 0.41 -1.7 298,757 - MPMX19_04860 0.41 -0.1 298,757 - MPMX19_04860 0.41 -0.1 298,757 - MPMX19_04860 0.41 -2.7 298,757 - MPMX19_04860 0.41 -0.1 298,757 - MPMX19_04860 0.41 -0.4 298,757 - MPMX19_04860 0.41 +0.1
Or see this region's nucleotide sequence