Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04854 and MPMX19_04855 are separated by 289 nucleotides MPMX19_04855 and MPMX19_04856 are separated by 237 nucleotides MPMX19_04856 and MPMX19_04857 are separated by 240 nucleotides MPMX19_04857 and MPMX19_04858 are separated by 50 nucleotides
MPMX19_04854: MPMX19_04854 - Hexuronate transporter, at 271,606 to 272,889
_04854
MPMX19_04855: MPMX19_04855 - hypothetical protein, at 273,179 to 273,349
_04855
MPMX19_04856: MPMX19_04856 - Phosphoglycolate phosphatase, at 273,587 to 274,285
_04856
MPMX19_04857: MPMX19_04857 - hypothetical protein, at 274,526 to 275,020
_04857
MPMX19_04858: MPMX19_04858 - hypothetical protein, at 275,071 to 293,739
_04858
Position (kb) 273
274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.705 kb on - strand, within MPMX19_04854 at 272.705 kb on - strand, within MPMX19_04854 at 272.705 kb on - strand, within MPMX19_04854 at 272.705 kb on - strand, within MPMX19_04854 at 272.762 kb on - strand at 272.974 kb on + strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 273.037 kb on + strand at 273.048 kb on + strand at 273.048 kb on + strand at 273.048 kb on + strand at 273.049 kb on - strand at 273.567 kb on + strand at 273.567 kb on + strand at 273.583 kb on - strand at 273.583 kb on - strand at 273.654 kb on + strand at 273.696 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.847 kb on - strand, within MPMX19_04856 at 273.847 kb on - strand, within MPMX19_04856 at 273.847 kb on - strand, within MPMX19_04856 at 274.032 kb on + strand, within MPMX19_04856 at 274.032 kb on + strand, within MPMX19_04856 at 274.033 kb on - strand, within MPMX19_04856 at 274.033 kb on - strand, within MPMX19_04856 at 274.033 kb on - strand, within MPMX19_04856 at 274.215 kb on + strand, within MPMX19_04856 at 274.215 kb on + strand, within MPMX19_04856 at 274.216 kb on - strand at 274.216 kb on - strand at 274.216 kb on - strand at 274.216 kb on - strand at 274.386 kb on + strand at 274.429 kb on + strand at 274.429 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.464 kb on - strand at 274.464 kb on - strand at 274.610 kb on + strand, within MPMX19_04857 at 274.610 kb on + strand, within MPMX19_04857 at 274.611 kb on - strand, within MPMX19_04857 at 274.665 kb on - strand, within MPMX19_04857 at 274.665 kb on - strand, within MPMX19_04857 at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 272,632 + MPMX19_04854 0.80 -0.4 272,632 + MPMX19_04854 0.80 -2.1 272,632 + MPMX19_04854 0.80 +0.5 272,632 + MPMX19_04854 0.80 -0.4 272,632 + MPMX19_04854 0.80 -0.9 272,632 + MPMX19_04854 0.80 +1.4 272,632 + MPMX19_04854 0.80 +0.3 272,632 + MPMX19_04854 0.80 -3.0 272,632 + MPMX19_04854 0.80 -0.5 272,632 + MPMX19_04854 0.80 -0.4 272,632 + MPMX19_04854 0.80 +0.1 272,632 + MPMX19_04854 0.80 -0.8 272,633 - MPMX19_04854 0.80 +0.5 272,633 - MPMX19_04854 0.80 -0.6 272,633 - MPMX19_04854 0.80 -1.2 272,633 - MPMX19_04854 0.80 +0.8 272,633 - MPMX19_04854 0.80 +0.9 272,633 - MPMX19_04854 0.80 +0.8 272,633 - MPMX19_04854 0.80 -0.7 272,633 - MPMX19_04854 0.80 -1.4 272,633 - MPMX19_04854 0.80 +0.2 272,633 - MPMX19_04854 0.80 +0.2 272,633 - MPMX19_04854 0.80 -1.6 272,633 - MPMX19_04854 0.80 +0.3 272,633 - MPMX19_04854 0.80 +1.3 272,704 + MPMX19_04854 0.86 -0.8 272,704 + MPMX19_04854 0.86 +0.4 272,704 + MPMX19_04854 0.86 -1.5 272,704 + MPMX19_04854 0.86 +0.6 272,704 + MPMX19_04854 0.86 -0.4 272,704 + MPMX19_04854 0.86 -2.5 272,704 + MPMX19_04854 0.86 -0.2 272,705 - MPMX19_04854 0.86 +0.6 272,705 - MPMX19_04854 0.86 -0.4 272,705 - MPMX19_04854 0.86 +0.2 272,705 - MPMX19_04854 0.86 +1.3 272,762 - -0.6 272,974 + -0.2 272,975 - -1.1 272,975 - -1.2 272,975 - -1.4 272,996 + -0.8 272,996 + +0.6 272,996 + +1.5 272,996 + -0.3 272,996 + -0.7 272,996 + -0.7 272,996 + -3.0 272,996 + +0.1 272,996 + -1.7 272,996 + -0.7 272,996 + +0.2 272,996 + -0.2 272,996 + -0.8 272,996 + -1.8 272,996 + -0.2 272,997 - +1.4 272,997 - -2.3 272,997 - -0.8 272,997 - -0.0 272,997 - +0.3 272,997 - -0.6 272,997 - +0.1 272,997 - -2.7 272,997 - -0.2 273,037 + -2.0 273,048 + +0.3 273,048 + -2.5 273,048 + -0.4 273,049 - +0.8 273,567 + -1.0 273,567 + +0.6 273,583 - -0.2 273,583 - -0.3 273,654 + +0.1 273,696 + MPMX19_04856 0.16 +0.5 273,846 + MPMX19_04856 0.37 -1.4 273,846 + MPMX19_04856 0.37 +0.0 273,846 + MPMX19_04856 0.37 +0.5 273,846 + MPMX19_04856 0.37 +0.5 273,847 - MPMX19_04856 0.37 -0.9 273,847 - MPMX19_04856 0.37 -1.2 273,847 - MPMX19_04856 0.37 +0.4 274,032 + MPMX19_04856 0.64 -1.3 274,032 + MPMX19_04856 0.64 -1.0 274,033 - MPMX19_04856 0.64 +0.1 274,033 - MPMX19_04856 0.64 +0.2 274,033 - MPMX19_04856 0.64 -1.5 274,215 + MPMX19_04856 0.90 -1.2 274,215 + MPMX19_04856 0.90 -1.7 274,216 - -0.7 274,216 - -0.5 274,216 - -1.8 274,216 - +0.1 274,386 + +0.6 274,429 + -0.6 274,429 + -1.0 274,463 + -0.2 274,463 + -1.0 274,463 + +1.4 274,463 + +1.8 274,463 + -2.6 274,463 + -0.2 274,463 + -0.6 274,464 - -0.2 274,464 - -0.4 274,610 + MPMX19_04857 0.17 -0.5 274,610 + MPMX19_04857 0.17 +1.4 274,611 - MPMX19_04857 0.17 +0.8 274,665 - MPMX19_04857 0.28 +2.8 274,665 - MPMX19_04857 0.28 -0.8 275,186 + -0.8 275,186 + -0.7 275,186 + -0.1 275,186 + -0.0 275,186 + -1.0 275,186 + -0.5 275,186 + -0.6 275,186 + -0.5 275,186 + +0.1 275,186 + -1.1 275,187 - -1.0 275,187 - +0.2 275,187 - -0.5 275,187 - -0.0 275,187 - +0.3 275,187 - -0.3 275,187 - +0.0 275,187 - -1.0 275,187 - +1.3 275,187 - +0.7 275,187 - -2.1
Or see this region's nucleotide sequence