Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04835

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04833 and MPMX19_04834 overlap by 4 nucleotidesMPMX19_04834 and MPMX19_04835 are separated by 15 nucleotidesMPMX19_04835 and MPMX19_04836 are separated by 22 nucleotidesMPMX19_04836 and MPMX19_04837 are separated by 184 nucleotides MPMX19_04833: MPMX19_04833 - Cysteine desulfurase, at 240,658 to 241,920 _04833 MPMX19_04834: MPMX19_04834 - Zinc-dependent sulfurtransferase SufU, at 241,917 to 242,384 _04834 MPMX19_04835: MPMX19_04835 - hypothetical protein, at 242,400 to 242,861 _04835 MPMX19_04836: MPMX19_04836 - Iron-binding protein IscA, at 242,884 to 243,228 _04836 MPMX19_04837: MPMX19_04837 - hypothetical protein, at 243,413 to 244,306 _04837 Position (kb) 242 243Strain fitness (log2 ratio) -2 -1 0 1at 242.547 kb on + strand, within MPMX19_04835at 242.547 kb on + strand, within MPMX19_04835at 242.601 kb on + strand, within MPMX19_04835at 242.646 kb on + strand, within MPMX19_04835at 242.646 kb on + strand, within MPMX19_04835at 242.653 kb on + strand, within MPMX19_04835at 242.687 kb on + strand, within MPMX19_04835at 242.687 kb on + strand, within MPMX19_04835at 242.852 kb on + strandat 242.869 kb on + strandat 242.869 kb on + strandat 242.869 kb on + strandat 242.869 kb on + strandat 242.869 kb on + strandat 243.237 kb on - strandat 243.332 kb on + strandat 243.333 kb on - strandat 243.333 kb on - strandat 243.403 kb on + strandat 243.403 kb on + strandat 243.403 kb on + strandat 243.403 kb on + strandat 243.404 kb on - strandat 243.404 kb on - strandat 243.404 kb on - strandat 243.461 kb on - strandat 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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242,547 + MPMX19_04835 0.32 +0.1
242,547 + MPMX19_04835 0.32 -0.4
242,601 + MPMX19_04835 0.44 -1.1
242,646 + MPMX19_04835 0.53 -1.8
242,646 + MPMX19_04835 0.53 -1.4
242,653 + MPMX19_04835 0.55 -1.8
242,687 + MPMX19_04835 0.62 -0.5
242,687 + MPMX19_04835 0.62 -0.5
242,852 + +0.6
242,869 + -1.0
242,869 + +0.5
242,869 + +0.2
242,869 + -0.9
242,869 + -0.2
243,237 - -0.5
243,332 + -0.6
243,333 - -0.1
243,333 - +0.5
243,403 + -1.1
243,403 + +0.1
243,403 + +0.2
243,403 + -1.0
243,404 - -1.2
243,404 - +0.6
243,404 - +0.3
243,461 - -0.5
243,714 + MPMX19_04837 0.34 -1.3
243,714 + MPMX19_04837 0.34 +0.3
243,714 + MPMX19_04837 0.34 -0.4
243,714 + MPMX19_04837 0.34 -1.4
243,714 + MPMX19_04837 0.34 -0.7
243,714 + MPMX19_04837 0.34 +1.3
243,714 + MPMX19_04837 0.34 -0.9
243,714 + MPMX19_04837 0.34 -1.5
243,714 + MPMX19_04837 0.34 -0.8
243,714 + MPMX19_04837 0.34 +0.8
243,714 + MPMX19_04837 0.34 +0.3
243,715 - MPMX19_04837 0.34 -2.2
243,715 - MPMX19_04837 0.34 +0.6
243,715 - MPMX19_04837 0.34 -1.2
243,715 - MPMX19_04837 0.34 -2.5
243,715 - MPMX19_04837 0.34 -0.5
243,715 - MPMX19_04837 0.34 -1.2
243,715 - MPMX19_04837 0.34 -1.0
243,715 - MPMX19_04837 0.34 +0.8
243,715 - MPMX19_04837 0.34 -1.3
243,783 + MPMX19_04837 0.41 -0.1
243,783 + MPMX19_04837 0.41 -0.1
243,783 + MPMX19_04837 0.41 -0.2
243,783 + MPMX19_04837 0.41 -0.3
243,783 + MPMX19_04837 0.41 +0.2
243,783 + MPMX19_04837 0.41 +0.2
243,783 + MPMX19_04837 0.41 -1.5
243,783 + MPMX19_04837 0.41 -1.4
243,783 + MPMX19_04837 0.41 -0.8
243,783 + MPMX19_04837 0.41 -0.2
243,783 + MPMX19_04837 0.41 -2.4
243,783 + MPMX19_04837 0.41 +0.7
243,783 + MPMX19_04837 0.41 -0.4
243,783 + MPMX19_04837 0.41 -0.8
243,783 + MPMX19_04837 0.41 -0.7
243,783 + MPMX19_04837 0.41 +0.1
243,783 + MPMX19_04837 0.41 -0.3
243,783 + MPMX19_04837 0.41 +1.1
243,783 - MPMX19_04837 0.41 -0.2
243,784 - MPMX19_04837 0.41 +0.8
243,784 - MPMX19_04837 0.41 -0.4
243,784 - MPMX19_04837 0.41 -1.9
243,784 - MPMX19_04837 0.41 -0.4
243,784 - MPMX19_04837 0.41 -1.2
243,784 - MPMX19_04837 0.41 +0.8
243,784 - MPMX19_04837 0.41 -0.4

Or see this region's nucleotide sequence