Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04820 and MPMX19_04821 are separated by 139 nucleotides MPMX19_04821 and MPMX19_04822 are separated by 287 nucleotides MPMX19_04822 and MPMX19_04823 are separated by 12 nucleotides
MPMX19_04820: MPMX19_04820 - Nucleoid occlusion protein, at 224,422 to 225,243
_04820
MPMX19_04821: MPMX19_04821 - hypothetical protein, at 225,383 to 227,533
_04821
MPMX19_04822: MPMX19_04822 - Ornithine lipid N-methyltransferase, at 227,821 to 228,396
_04822
MPMX19_04823: MPMX19_04823 - hypothetical protein, at 228,409 to 229,731
_04823
Position (kb)
225
226
227
228 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.754 kb on - strand, within MPMX19_04820 at 224.754 kb on - strand, within MPMX19_04820 at 224.754 kb on - strand, within MPMX19_04820 at 224.852 kb on + strand, within MPMX19_04820 at 224.852 kb on + strand, within MPMX19_04820 at 224.852 kb on + strand, within MPMX19_04820 at 224.853 kb on - strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 225.080 kb on + strand, within MPMX19_04820 at 225.081 kb on - strand, within MPMX19_04820 at 226.689 kb on + strand, within MPMX19_04821 at 226.689 kb on + strand, within MPMX19_04821 at 226.689 kb on + strand, within MPMX19_04821 at 226.689 kb on + strand, within MPMX19_04821 at 226.690 kb on - strand, within MPMX19_04821 at 226.690 kb on - strand, within MPMX19_04821 at 226.690 kb on - strand, within MPMX19_04821 at 226.690 kb on - strand, within MPMX19_04821 at 226.765 kb on + strand, within MPMX19_04821 at 226.765 kb on + strand, within MPMX19_04821 at 226.766 kb on - strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.187 kb on + strand, within MPMX19_04821 at 227.187 kb on + strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.224 kb on - strand, within MPMX19_04821 at 227.224 kb on - strand, within MPMX19_04821 at 227.224 kb on - strand, within MPMX19_04821 at 227.224 kb on - strand, within MPMX19_04821 at 227.224 kb on - strand, within MPMX19_04821 at 227.358 kb on + strand at 227.358 kb on + strand at 227.358 kb on + strand at 227.359 kb on - strand at 227.445 kb on + strand at 227.445 kb on + strand at 227.446 kb on - strand at 227.446 kb on - strand at 227.446 kb on - strand at 227.527 kb on + strand at 227.527 kb on + strand at 227.528 kb on - strand at 227.528 kb on - strand at 227.528 kb on - strand at 227.528 kb on - strand at 227.551 kb on - strand at 227.551 kb on - strand at 227.551 kb on - strand at 227.760 kb on + strand at 227.760 kb on + strand at 227.760 kb on + strand at 227.761 kb on - strand at 227.764 kb on - strand at 227.774 kb on + strand at 227.888 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.272 kb on + strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.420 kb on + strand at 228.420 kb on + strand at 228.421 kb on - strand at 228.421 kb on - strand at 228.421 kb on - strand at 228.425 kb on + strand at 228.425 kb on + strand at 228.426 kb on - strand at 228.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 224,507 + MPMX19_04820 0.10 -0.2 224,507 + MPMX19_04820 0.10 -2.3 224,507 + MPMX19_04820 0.10 -1.2 224,507 + MPMX19_04820 0.10 +0.2 224,507 + MPMX19_04820 0.10 +1.0 224,508 - MPMX19_04820 0.10 -0.8 224,508 - MPMX19_04820 0.10 -1.0 224,508 - MPMX19_04820 0.10 -0.7 224,508 - MPMX19_04820 0.10 -0.8 224,508 - MPMX19_04820 0.10 -0.4 224,508 - MPMX19_04820 0.10 -0.4 224,508 - MPMX19_04820 0.10 -1.6 224,508 - MPMX19_04820 0.10 -0.8 224,508 - MPMX19_04820 0.10 -1.1 224,508 - MPMX19_04820 0.10 -0.0 224,508 - MPMX19_04820 0.10 +0.0 224,753 + MPMX19_04820 0.40 +0.2 224,753 + MPMX19_04820 0.40 +0.2 224,753 + MPMX19_04820 0.40 -1.1 224,753 + MPMX19_04820 0.40 -0.9 224,753 + MPMX19_04820 0.40 -0.7 224,754 - MPMX19_04820 0.40 -1.5 224,754 - MPMX19_04820 0.40 -0.7 224,754 - MPMX19_04820 0.40 -0.5 224,852 + MPMX19_04820 0.52 -0.3 224,852 + MPMX19_04820 0.52 +1.6 224,852 + MPMX19_04820 0.52 +0.4 224,853 - MPMX19_04820 0.52 -1.7 224,972 + MPMX19_04820 0.67 +0.2 224,972 + MPMX19_04820 0.67 -1.6 224,972 + MPMX19_04820 0.67 -0.3 224,972 + MPMX19_04820 0.67 -1.0 224,972 + MPMX19_04820 0.67 +0.2 224,972 + MPMX19_04820 0.67 +1.0 224,972 + MPMX19_04820 0.67 -0.0 224,972 + MPMX19_04820 0.67 -1.9 224,972 + MPMX19_04820 0.67 -0.7 224,972 + MPMX19_04820 0.67 +1.4 224,973 - MPMX19_04820 0.67 +0.6 224,973 - MPMX19_04820 0.67 -1.0 224,973 - MPMX19_04820 0.67 -2.1 224,973 - MPMX19_04820 0.67 -0.5 224,973 - MPMX19_04820 0.67 +0.4 224,973 - MPMX19_04820 0.67 +0.4 225,080 + MPMX19_04820 0.80 -0.5 225,081 - MPMX19_04820 0.80 -0.8 226,689 + MPMX19_04821 0.61 -0.3 226,689 + MPMX19_04821 0.61 -1.4 226,689 + MPMX19_04821 0.61 -1.7 226,689 + MPMX19_04821 0.61 -0.6 226,690 - MPMX19_04821 0.61 -1.2 226,690 - MPMX19_04821 0.61 -2.9 226,690 - MPMX19_04821 0.61 +0.0 226,690 - MPMX19_04821 0.61 -2.2 226,765 + MPMX19_04821 0.64 -0.9 226,765 + MPMX19_04821 0.64 -0.9 226,766 - MPMX19_04821 0.64 -0.9 226,929 + MPMX19_04821 0.72 -2.3 226,929 + MPMX19_04821 0.72 +0.5 226,929 + MPMX19_04821 0.72 +0.6 226,929 + MPMX19_04821 0.72 -1.2 226,929 + MPMX19_04821 0.72 +0.3 226,929 + MPMX19_04821 0.72 +0.3 226,929 + MPMX19_04821 0.72 -1.2 226,929 + MPMX19_04821 0.72 -0.4 226,930 - MPMX19_04821 0.72 -1.4 226,930 - MPMX19_04821 0.72 -0.9 226,930 - MPMX19_04821 0.72 +0.4 226,930 - MPMX19_04821 0.72 +0.1 226,930 - MPMX19_04821 0.72 -0.3 226,930 - MPMX19_04821 0.72 -0.8 226,930 - MPMX19_04821 0.72 -0.8 226,930 - MPMX19_04821 0.72 -0.6 226,930 - MPMX19_04821 0.72 -1.7 227,052 + MPMX19_04821 0.78 -1.5 227,052 + MPMX19_04821 0.78 -1.2 227,052 + MPMX19_04821 0.78 -0.5 227,052 + MPMX19_04821 0.78 -0.7 227,052 + MPMX19_04821 0.78 -0.5 227,052 + MPMX19_04821 0.78 -0.4 227,053 - MPMX19_04821 0.78 +0.8 227,053 - MPMX19_04821 0.78 -1.7 227,053 - MPMX19_04821 0.78 +0.4 227,053 - MPMX19_04821 0.78 -0.9 227,053 - MPMX19_04821 0.78 +0.3 227,053 - MPMX19_04821 0.78 -0.1 227,154 + MPMX19_04821 0.82 -0.5 227,154 + MPMX19_04821 0.82 +0.2 227,154 + MPMX19_04821 0.82 -0.3 227,154 + MPMX19_04821 0.82 -1.4 227,154 + MPMX19_04821 0.82 -1.4 227,154 + MPMX19_04821 0.82 -1.8 227,154 + MPMX19_04821 0.82 -2.3 227,154 + MPMX19_04821 0.82 +0.1 227,154 + MPMX19_04821 0.82 +0.5 227,154 + MPMX19_04821 0.82 -1.2 227,154 + MPMX19_04821 0.82 +0.3 227,154 + MPMX19_04821 0.82 -0.5 227,154 + MPMX19_04821 0.82 -1.2 227,154 + MPMX19_04821 0.82 -0.1 227,154 + MPMX19_04821 0.82 -0.1 227,155 - MPMX19_04821 0.82 -1.5 227,155 - MPMX19_04821 0.82 +1.4 227,155 - MPMX19_04821 0.82 +0.5 227,155 - MPMX19_04821 0.82 +0.2 227,155 - MPMX19_04821 0.82 -1.0 227,155 - MPMX19_04821 0.82 +0.9 227,155 - MPMX19_04821 0.82 -0.1 227,155 - MPMX19_04821 0.82 -1.8 227,155 - MPMX19_04821 0.82 -0.7 227,155 - MPMX19_04821 0.82 -0.9 227,155 - MPMX19_04821 0.82 -0.5 227,155 - MPMX19_04821 0.82 +0.0 227,155 - MPMX19_04821 0.82 +1.8 227,155 - MPMX19_04821 0.82 -0.8 227,155 - MPMX19_04821 0.82 -1.5 227,155 - MPMX19_04821 0.82 -1.9 227,155 - MPMX19_04821 0.82 -0.1 227,155 - MPMX19_04821 0.82 -1.2 227,155 - MPMX19_04821 0.82 -0.5 227,155 - MPMX19_04821 0.82 +0.8 227,155 - MPMX19_04821 0.82 -1.0 227,155 - MPMX19_04821 0.82 -0.2 227,187 + MPMX19_04821 0.84 -0.2 227,187 + MPMX19_04821 0.84 +1.4 227,188 - MPMX19_04821 0.84 -0.2 227,188 - MPMX19_04821 0.84 -1.0 227,188 - MPMX19_04821 0.84 +0.5 227,188 - MPMX19_04821 0.84 -1.1 227,188 - MPMX19_04821 0.84 -0.1 227,188 - MPMX19_04821 0.84 -0.4 227,223 + MPMX19_04821 0.86 -1.4 227,223 + MPMX19_04821 0.86 -0.7 227,223 + MPMX19_04821 0.86 -1.3 227,223 + MPMX19_04821 0.86 -1.0 227,223 + MPMX19_04821 0.86 +0.5 227,223 + MPMX19_04821 0.86 +0.0 227,223 + MPMX19_04821 0.86 -0.8 227,224 - MPMX19_04821 0.86 -1.7 227,224 - MPMX19_04821 0.86 -0.0 227,224 - MPMX19_04821 0.86 -0.1 227,224 - MPMX19_04821 0.86 -0.8 227,224 - MPMX19_04821 0.86 -2.1 227,358 + -1.0 227,358 + +0.4 227,358 + +0.4 227,359 - -1.4 227,445 + +0.3 227,445 + -0.3 227,446 - -0.2 227,446 - -0.6 227,446 - -1.5 227,527 + -0.4 227,527 + +0.6 227,528 - -2.2 227,528 - +0.8 227,528 - +0.9 227,528 - -1.0 227,551 - +0.1 227,551 - -0.4 227,551 - -0.2 227,760 + -2.5 227,760 + -1.7 227,760 + +1.8 227,761 - +0.7 227,764 - -0.1 227,774 + -0.3 227,888 + MPMX19_04822 0.12 -0.8 228,271 + MPMX19_04822 0.78 +0.2 228,271 + MPMX19_04822 0.78 -0.2 228,271 + MPMX19_04822 0.78 +0.3 228,271 + MPMX19_04822 0.78 -0.8 228,271 + MPMX19_04822 0.78 -0.4 228,271 + MPMX19_04822 0.78 -1.2 228,271 + MPMX19_04822 0.78 -0.8 228,272 + MPMX19_04822 0.78 -1.4 228,272 - MPMX19_04822 0.78 -0.2 228,272 - MPMX19_04822 0.78 +0.5 228,272 - MPMX19_04822 0.78 -0.2 228,272 - MPMX19_04822 0.78 +0.9 228,272 - MPMX19_04822 0.78 -0.0 228,272 - MPMX19_04822 0.78 +0.3 228,272 - MPMX19_04822 0.78 +1.1 228,272 - MPMX19_04822 0.78 -0.5 228,272 - MPMX19_04822 0.78 -0.6 228,272 - MPMX19_04822 0.78 -0.5 228,272 - MPMX19_04822 0.78 -0.4 228,420 + -1.0 228,420 + -0.5 228,421 - -1.0 228,421 - +0.1 228,421 - -1.2 228,425 + +0.1 228,425 + +0.5 228,426 - -0.8 228,426 - -2.5
Or see this region's nucleotide sequence