Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04821

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04820 and MPMX19_04821 are separated by 139 nucleotidesMPMX19_04821 and MPMX19_04822 are separated by 287 nucleotidesMPMX19_04822 and MPMX19_04823 are separated by 12 nucleotides MPMX19_04820: MPMX19_04820 - Nucleoid occlusion protein, at 224,422 to 225,243 _04820 MPMX19_04821: MPMX19_04821 - hypothetical protein, at 225,383 to 227,533 _04821 MPMX19_04822: MPMX19_04822 - Ornithine lipid N-methyltransferase, at 227,821 to 228,396 _04822 MPMX19_04823: MPMX19_04823 - hypothetical protein, at 228,409 to 229,731 _04823 Position (kb) 225 226 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 224.507 kb on + strand, within MPMX19_04820at 224.507 kb on + strand, within MPMX19_04820at 224.507 kb on + strand, within MPMX19_04820at 224.507 kb on + strand, within MPMX19_04820at 224.507 kb on + strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.508 kb on - strand, within MPMX19_04820at 224.753 kb on + strand, within MPMX19_04820at 224.753 kb on + strand, within MPMX19_04820at 224.753 kb on + strand, within MPMX19_04820at 224.753 kb on + strand, within MPMX19_04820at 224.753 kb on + strand, within MPMX19_04820at 224.754 kb on - strand, within MPMX19_04820at 224.754 kb on - strand, within MPMX19_04820at 224.754 kb on - strand, within MPMX19_04820at 224.852 kb on + strand, within MPMX19_04820at 224.852 kb on + strand, within MPMX19_04820at 224.852 kb on + strand, within MPMX19_04820at 224.853 kb on - strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.972 kb on + strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 224.973 kb on - strand, within MPMX19_04820at 225.080 kb on + strand, within MPMX19_04820at 225.081 kb on - strand, within MPMX19_04820at 226.689 kb on + strand, within MPMX19_04821at 226.689 kb on + strand, within MPMX19_04821at 226.689 kb on + strand, within MPMX19_04821at 226.689 kb on + strand, within MPMX19_04821at 226.690 kb on - strand, within MPMX19_04821at 226.690 kb on - strand, within MPMX19_04821at 226.690 kb on - strand, within MPMX19_04821at 226.690 kb on - strand, within MPMX19_04821at 226.765 kb on + strand, within MPMX19_04821at 226.765 kb on + strand, within MPMX19_04821at 226.766 kb on - strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.187 kb on + strand, within MPMX19_04821at 227.187 kb on + strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.224 kb on - strand, within MPMX19_04821at 227.224 kb on - strand, within MPMX19_04821at 227.224 kb on - strand, within MPMX19_04821at 227.224 kb on - strand, within MPMX19_04821at 227.224 kb on - strand, within MPMX19_04821at 227.358 kb on + strandat 227.358 kb on + strandat 227.358 kb on + strandat 227.359 kb on - strandat 227.445 kb on + strandat 227.445 kb on + strandat 227.446 kb on - strandat 227.446 kb on - strandat 227.446 kb on - strandat 227.527 kb on + strandat 227.527 kb on + strandat 227.528 kb on - strandat 227.528 kb on - strandat 227.528 kb on - strandat 227.528 kb on - strandat 227.551 kb on - strandat 227.551 kb on - strandat 227.551 kb on - strandat 227.760 kb on + strandat 227.760 kb on + strandat 227.760 kb on + strandat 227.761 kb on - strandat 227.764 kb on - strandat 227.774 kb on + strandat 227.888 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.272 kb on + strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.420 kb on + strandat 228.420 kb on + strandat 228.421 kb on - strandat 228.421 kb on - strandat 228.421 kb on - strandat 228.425 kb on + strandat 228.425 kb on + strandat 228.426 kb on - strandat 228.426 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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224,507 + MPMX19_04820 0.10 -0.2
224,507 + MPMX19_04820 0.10 -2.3
224,507 + MPMX19_04820 0.10 -1.2
224,507 + MPMX19_04820 0.10 +0.2
224,507 + MPMX19_04820 0.10 +1.0
224,508 - MPMX19_04820 0.10 -0.8
224,508 - MPMX19_04820 0.10 -1.0
224,508 - MPMX19_04820 0.10 -0.7
224,508 - MPMX19_04820 0.10 -0.8
224,508 - MPMX19_04820 0.10 -0.4
224,508 - MPMX19_04820 0.10 -0.4
224,508 - MPMX19_04820 0.10 -1.6
224,508 - MPMX19_04820 0.10 -0.8
224,508 - MPMX19_04820 0.10 -1.1
224,508 - MPMX19_04820 0.10 -0.0
224,508 - MPMX19_04820 0.10 +0.0
224,753 + MPMX19_04820 0.40 +0.2
224,753 + MPMX19_04820 0.40 +0.2
224,753 + MPMX19_04820 0.40 -1.1
224,753 + MPMX19_04820 0.40 -0.9
224,753 + MPMX19_04820 0.40 -0.7
224,754 - MPMX19_04820 0.40 -1.5
224,754 - MPMX19_04820 0.40 -0.7
224,754 - MPMX19_04820 0.40 -0.5
224,852 + MPMX19_04820 0.52 -0.3
224,852 + MPMX19_04820 0.52 +1.6
224,852 + MPMX19_04820 0.52 +0.4
224,853 - MPMX19_04820 0.52 -1.7
224,972 + MPMX19_04820 0.67 +0.2
224,972 + MPMX19_04820 0.67 -1.6
224,972 + MPMX19_04820 0.67 -0.3
224,972 + MPMX19_04820 0.67 -1.0
224,972 + MPMX19_04820 0.67 +0.2
224,972 + MPMX19_04820 0.67 +1.0
224,972 + MPMX19_04820 0.67 -0.0
224,972 + MPMX19_04820 0.67 -1.9
224,972 + MPMX19_04820 0.67 -0.7
224,972 + MPMX19_04820 0.67 +1.4
224,973 - MPMX19_04820 0.67 +0.6
224,973 - MPMX19_04820 0.67 -1.0
224,973 - MPMX19_04820 0.67 -2.1
224,973 - MPMX19_04820 0.67 -0.5
224,973 - MPMX19_04820 0.67 +0.4
224,973 - MPMX19_04820 0.67 +0.4
225,080 + MPMX19_04820 0.80 -0.5
225,081 - MPMX19_04820 0.80 -0.8
226,689 + MPMX19_04821 0.61 -0.3
226,689 + MPMX19_04821 0.61 -1.4
226,689 + MPMX19_04821 0.61 -1.7
226,689 + MPMX19_04821 0.61 -0.6
226,690 - MPMX19_04821 0.61 -1.2
226,690 - MPMX19_04821 0.61 -2.9
226,690 - MPMX19_04821 0.61 +0.0
226,690 - MPMX19_04821 0.61 -2.2
226,765 + MPMX19_04821 0.64 -0.9
226,765 + MPMX19_04821 0.64 -0.9
226,766 - MPMX19_04821 0.64 -0.9
226,929 + MPMX19_04821 0.72 -2.3
226,929 + MPMX19_04821 0.72 +0.5
226,929 + MPMX19_04821 0.72 +0.6
226,929 + MPMX19_04821 0.72 -1.2
226,929 + MPMX19_04821 0.72 +0.3
226,929 + MPMX19_04821 0.72 +0.3
226,929 + MPMX19_04821 0.72 -1.2
226,929 + MPMX19_04821 0.72 -0.4
226,930 - MPMX19_04821 0.72 -1.4
226,930 - MPMX19_04821 0.72 -0.9
226,930 - MPMX19_04821 0.72 +0.4
226,930 - MPMX19_04821 0.72 +0.1
226,930 - MPMX19_04821 0.72 -0.3
226,930 - MPMX19_04821 0.72 -0.8
226,930 - MPMX19_04821 0.72 -0.8
226,930 - MPMX19_04821 0.72 -0.6
226,930 - MPMX19_04821 0.72 -1.7
227,052 + MPMX19_04821 0.78 -1.5
227,052 + MPMX19_04821 0.78 -1.2
227,052 + MPMX19_04821 0.78 -0.5
227,052 + MPMX19_04821 0.78 -0.7
227,052 + MPMX19_04821 0.78 -0.5
227,052 + MPMX19_04821 0.78 -0.4
227,053 - MPMX19_04821 0.78 +0.8
227,053 - MPMX19_04821 0.78 -1.7
227,053 - MPMX19_04821 0.78 +0.4
227,053 - MPMX19_04821 0.78 -0.9
227,053 - MPMX19_04821 0.78 +0.3
227,053 - MPMX19_04821 0.78 -0.1
227,154 + MPMX19_04821 0.82 -0.5
227,154 + MPMX19_04821 0.82 +0.2
227,154 + MPMX19_04821 0.82 -0.3
227,154 + MPMX19_04821 0.82 -1.4
227,154 + MPMX19_04821 0.82 -1.4
227,154 + MPMX19_04821 0.82 -1.8
227,154 + MPMX19_04821 0.82 -2.3
227,154 + MPMX19_04821 0.82 +0.1
227,154 + MPMX19_04821 0.82 +0.5
227,154 + MPMX19_04821 0.82 -1.2
227,154 + MPMX19_04821 0.82 +0.3
227,154 + MPMX19_04821 0.82 -0.5
227,154 + MPMX19_04821 0.82 -1.2
227,154 + MPMX19_04821 0.82 -0.1
227,154 + MPMX19_04821 0.82 -0.1
227,155 - MPMX19_04821 0.82 -1.5
227,155 - MPMX19_04821 0.82 +1.4
227,155 - MPMX19_04821 0.82 +0.5
227,155 - MPMX19_04821 0.82 +0.2
227,155 - MPMX19_04821 0.82 -1.0
227,155 - MPMX19_04821 0.82 +0.9
227,155 - MPMX19_04821 0.82 -0.1
227,155 - MPMX19_04821 0.82 -1.8
227,155 - MPMX19_04821 0.82 -0.7
227,155 - MPMX19_04821 0.82 -0.9
227,155 - MPMX19_04821 0.82 -0.5
227,155 - MPMX19_04821 0.82 +0.0
227,155 - MPMX19_04821 0.82 +1.8
227,155 - MPMX19_04821 0.82 -0.8
227,155 - MPMX19_04821 0.82 -1.5
227,155 - MPMX19_04821 0.82 -1.9
227,155 - MPMX19_04821 0.82 -0.1
227,155 - MPMX19_04821 0.82 -1.2
227,155 - MPMX19_04821 0.82 -0.5
227,155 - MPMX19_04821 0.82 +0.8
227,155 - MPMX19_04821 0.82 -1.0
227,155 - MPMX19_04821 0.82 -0.2
227,187 + MPMX19_04821 0.84 -0.2
227,187 + MPMX19_04821 0.84 +1.4
227,188 - MPMX19_04821 0.84 -0.2
227,188 - MPMX19_04821 0.84 -1.0
227,188 - MPMX19_04821 0.84 +0.5
227,188 - MPMX19_04821 0.84 -1.1
227,188 - MPMX19_04821 0.84 -0.1
227,188 - MPMX19_04821 0.84 -0.4
227,223 + MPMX19_04821 0.86 -1.4
227,223 + MPMX19_04821 0.86 -0.7
227,223 + MPMX19_04821 0.86 -1.3
227,223 + MPMX19_04821 0.86 -1.0
227,223 + MPMX19_04821 0.86 +0.5
227,223 + MPMX19_04821 0.86 +0.0
227,223 + MPMX19_04821 0.86 -0.8
227,224 - MPMX19_04821 0.86 -1.7
227,224 - MPMX19_04821 0.86 -0.0
227,224 - MPMX19_04821 0.86 -0.1
227,224 - MPMX19_04821 0.86 -0.8
227,224 - MPMX19_04821 0.86 -2.1
227,358 + -1.0
227,358 + +0.4
227,358 + +0.4
227,359 - -1.4
227,445 + +0.3
227,445 + -0.3
227,446 - -0.2
227,446 - -0.6
227,446 - -1.5
227,527 + -0.4
227,527 + +0.6
227,528 - -2.2
227,528 - +0.8
227,528 - +0.9
227,528 - -1.0
227,551 - +0.1
227,551 - -0.4
227,551 - -0.2
227,760 + -2.5
227,760 + -1.7
227,760 + +1.8
227,761 - +0.7
227,764 - -0.1
227,774 + -0.3
227,888 + MPMX19_04822 0.12 -0.8
228,271 + MPMX19_04822 0.78 +0.2
228,271 + MPMX19_04822 0.78 -0.2
228,271 + MPMX19_04822 0.78 +0.3
228,271 + MPMX19_04822 0.78 -0.8
228,271 + MPMX19_04822 0.78 -0.4
228,271 + MPMX19_04822 0.78 -1.2
228,271 + MPMX19_04822 0.78 -0.8
228,272 + MPMX19_04822 0.78 -1.4
228,272 - MPMX19_04822 0.78 -0.2
228,272 - MPMX19_04822 0.78 +0.5
228,272 - MPMX19_04822 0.78 -0.2
228,272 - MPMX19_04822 0.78 +0.9
228,272 - MPMX19_04822 0.78 -0.0
228,272 - MPMX19_04822 0.78 +0.3
228,272 - MPMX19_04822 0.78 +1.1
228,272 - MPMX19_04822 0.78 -0.5
228,272 - MPMX19_04822 0.78 -0.6
228,272 - MPMX19_04822 0.78 -0.5
228,272 - MPMX19_04822 0.78 -0.4
228,420 + -1.0
228,420 + -0.5
228,421 - -1.0
228,421 - +0.1
228,421 - -1.2
228,425 + +0.1
228,425 + +0.5
228,426 - -0.8
228,426 - -2.5

Or see this region's nucleotide sequence