Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04818 and MPMX19_04819 are separated by 354 nucleotides MPMX19_04819 and MPMX19_04820 are separated by 101 nucleotides
MPMX19_04818: MPMX19_04818 - Hydroxyacylglutathione hydrolase GloC, at 222,566 to 223,198
_04818
MPMX19_04819: MPMX19_04819 - hypothetical protein, at 223,553 to 224,320
_04819
MPMX19_04820: MPMX19_04820 - Nucleoid occlusion protein, at 224,422 to 225,243
_04820
Position (kb)
223
224
225 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.197 kb on - strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.252 kb on - strand at 223.314 kb on - strand at 223.314 kb on - strand at 223.332 kb on + strand at 223.332 kb on + strand at 223.332 kb on + strand at 223.332 kb on + strand at 223.333 kb on - strand at 223.333 kb on - strand at 223.333 kb on - strand at 223.472 kb on + strand at 223.473 kb on - strand at 223.473 kb on - strand at 223.495 kb on + strand at 223.549 kb on + strand at 223.549 kb on + strand at 223.549 kb on + strand at 223.549 kb on + strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.795 kb on - strand, within MPMX19_04819 at 223.924 kb on + strand, within MPMX19_04819 at 223.925 kb on - strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.303 kb on + strand at 224.304 kb on - strand at 224.304 kb on - strand at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.754 kb on - strand, within MPMX19_04820 at 224.754 kb on - strand, within MPMX19_04820 at 224.754 kb on - strand, within MPMX19_04820 at 224.852 kb on + strand, within MPMX19_04820 at 224.852 kb on + strand, within MPMX19_04820 at 224.852 kb on + strand, within MPMX19_04820 at 224.853 kb on - strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 225.080 kb on + strand, within MPMX19_04820 at 225.081 kb on - strand, within MPMX19_04820
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 222,572 + +0.6 222,572 + +0.8 222,572 + -0.1 222,572 + +0.3 222,572 + -0.2 222,572 + +0.3 222,572 + -1.9 222,572 + -0.0 222,572 + +0.2 222,572 + -0.3 222,572 + -0.4 222,573 - -0.3 222,573 - -0.8 222,573 - -0.4 222,573 - -0.4 222,573 - -0.2 222,573 - -1.0 222,573 - -0.7 222,573 - +2.4 223,067 + MPMX19_04818 0.79 -0.7 223,067 + MPMX19_04818 0.79 -1.9 223,067 + MPMX19_04818 0.79 +0.0 223,067 + MPMX19_04818 0.79 +1.4 223,067 + MPMX19_04818 0.79 -0.5 223,067 + MPMX19_04818 0.79 -0.7 223,068 - MPMX19_04818 0.79 +0.3 223,068 - MPMX19_04818 0.79 -1.4 223,068 - MPMX19_04818 0.79 -0.7 223,068 - MPMX19_04818 0.79 +0.8 223,068 - MPMX19_04818 0.79 -1.2 223,068 - MPMX19_04818 0.79 -1.4 223,068 - MPMX19_04818 0.79 -2.5 223,068 - MPMX19_04818 0.79 -0.5 223,175 + -1.1 223,175 + -0.4 223,175 + +0.0 223,175 + -1.2 223,175 + -0.5 223,175 + -0.5 223,176 - -1.7 223,176 - -0.4 223,176 - -0.8 223,176 - -0.0 223,197 - -1.7 223,249 + -0.2 223,249 + -0.8 223,249 + -1.0 223,249 + +1.0 223,249 + -0.4 223,249 + +0.3 223,249 + -1.7 223,249 + +0.0 223,250 - -0.8 223,250 - -0.7 223,250 - -0.4 223,250 - +0.6 223,250 - -0.5 223,252 - -1.5 223,314 - +0.3 223,314 - -0.5 223,332 + -0.1 223,332 + -1.3 223,332 + -0.3 223,332 + +0.8 223,333 - -1.4 223,333 - -0.0 223,333 - -1.5 223,472 + -0.7 223,473 - -1.0 223,473 - +1.1 223,495 + +0.9 223,549 + -0.8 223,549 + +0.2 223,549 + +1.2 223,549 + +0.5 223,550 - -0.4 223,550 - -3.1 223,550 - -0.5 223,550 - -1.5 223,550 - +0.5 223,550 - +0.5 223,550 - -0.8 223,550 - +1.0 223,550 - -0.5 223,643 + MPMX19_04819 0.12 +0.9 223,643 + MPMX19_04819 0.12 -0.5 223,643 + MPMX19_04819 0.12 +0.4 223,643 + MPMX19_04819 0.12 -0.8 223,643 + MPMX19_04819 0.12 +0.2 223,643 + MPMX19_04819 0.12 -0.7 223,643 + MPMX19_04819 0.12 +0.1 223,643 + MPMX19_04819 0.12 -0.0 223,643 + MPMX19_04819 0.12 -1.2 223,643 + MPMX19_04819 0.12 -1.9 223,643 + MPMX19_04819 0.12 +0.0 223,643 + MPMX19_04819 0.12 -0.8 223,643 + MPMX19_04819 0.12 -1.4 223,643 + MPMX19_04819 0.12 -1.3 223,644 - MPMX19_04819 0.12 +0.0 223,644 - MPMX19_04819 0.12 +0.6 223,644 - MPMX19_04819 0.12 -0.4 223,644 - MPMX19_04819 0.12 -0.1 223,644 - MPMX19_04819 0.12 -0.5 223,644 - MPMX19_04819 0.12 -0.2 223,644 - MPMX19_04819 0.12 -1.4 223,644 - MPMX19_04819 0.12 -0.3 223,644 - MPMX19_04819 0.12 +0.0 223,644 - MPMX19_04819 0.12 +0.4 223,644 - MPMX19_04819 0.12 -0.6 223,644 - MPMX19_04819 0.12 -1.5 223,644 - MPMX19_04819 0.12 -1.2 223,644 - MPMX19_04819 0.12 -0.7 223,644 - MPMX19_04819 0.12 -0.8 223,644 - MPMX19_04819 0.12 -0.8 223,644 - MPMX19_04819 0.12 -1.0 223,644 - MPMX19_04819 0.12 +0.4 223,644 - MPMX19_04819 0.12 -0.2 223,644 - MPMX19_04819 0.12 -0.3 223,691 + MPMX19_04819 0.18 +0.3 223,691 + MPMX19_04819 0.18 -1.8 223,691 + MPMX19_04819 0.18 -0.9 223,691 + MPMX19_04819 0.18 +0.5 223,691 + MPMX19_04819 0.18 +0.2 223,691 + MPMX19_04819 0.18 +0.5 223,691 + MPMX19_04819 0.18 -0.5 223,691 + MPMX19_04819 0.18 +0.6 223,691 + MPMX19_04819 0.18 -0.5 223,691 + MPMX19_04819 0.18 +0.5 223,691 + MPMX19_04819 0.18 -1.9 223,692 - MPMX19_04819 0.18 -0.6 223,692 - MPMX19_04819 0.18 -0.0 223,692 - MPMX19_04819 0.18 -1.4 223,692 - MPMX19_04819 0.18 +1.4 223,692 - MPMX19_04819 0.18 -1.6 223,692 - MPMX19_04819 0.18 +0.3 223,692 - MPMX19_04819 0.18 -1.0 223,795 - MPMX19_04819 0.32 +0.6 223,924 + MPMX19_04819 0.48 +0.4 223,925 - MPMX19_04819 0.48 -1.3 224,057 + MPMX19_04819 0.66 +0.6 224,057 + MPMX19_04819 0.66 -1.6 224,057 + MPMX19_04819 0.66 +0.8 224,057 + MPMX19_04819 0.66 -1.9 224,057 + MPMX19_04819 0.66 +0.1 224,057 + MPMX19_04819 0.66 -0.7 224,058 - MPMX19_04819 0.66 -0.2 224,058 - MPMX19_04819 0.66 +0.6 224,058 - MPMX19_04819 0.66 -1.8 224,058 - MPMX19_04819 0.66 -1.2 224,058 - MPMX19_04819 0.66 -1.0 224,058 - MPMX19_04819 0.66 -1.2 224,058 - MPMX19_04819 0.66 +1.3 224,114 + MPMX19_04819 0.73 -0.3 224,114 + MPMX19_04819 0.73 -0.7 224,114 + MPMX19_04819 0.73 -1.0 224,114 + MPMX19_04819 0.73 +0.2 224,114 + MPMX19_04819 0.73 -0.8 224,114 + MPMX19_04819 0.73 -0.1 224,114 + MPMX19_04819 0.73 -0.5 224,114 + MPMX19_04819 0.73 -1.2 224,114 + MPMX19_04819 0.73 +0.2 224,114 + MPMX19_04819 0.73 -0.8 224,114 + MPMX19_04819 0.73 -1.1 224,114 + MPMX19_04819 0.73 -0.3 224,115 - MPMX19_04819 0.73 +0.1 224,115 - MPMX19_04819 0.73 -0.1 224,115 - MPMX19_04819 0.73 -2.1 224,115 - MPMX19_04819 0.73 -1.7 224,115 - MPMX19_04819 0.73 -0.7 224,115 - MPMX19_04819 0.73 +0.3 224,115 - MPMX19_04819 0.73 -2.5 224,115 - MPMX19_04819 0.73 -1.0 224,115 - MPMX19_04819 0.73 -0.5 224,115 - MPMX19_04819 0.73 -0.5 224,115 - MPMX19_04819 0.73 -2.0 224,115 - MPMX19_04819 0.73 -0.4 224,115 - MPMX19_04819 0.73 -2.1 224,303 + -0.1 224,304 - -0.8 224,304 - -1.1 224,507 + MPMX19_04820 0.10 -0.2 224,507 + MPMX19_04820 0.10 -2.3 224,507 + MPMX19_04820 0.10 -1.2 224,507 + MPMX19_04820 0.10 +0.2 224,507 + MPMX19_04820 0.10 +1.0 224,508 - MPMX19_04820 0.10 -0.8 224,508 - MPMX19_04820 0.10 -1.0 224,508 - MPMX19_04820 0.10 -0.7 224,508 - MPMX19_04820 0.10 -0.8 224,508 - MPMX19_04820 0.10 -0.4 224,508 - MPMX19_04820 0.10 -0.4 224,508 - MPMX19_04820 0.10 -1.6 224,508 - MPMX19_04820 0.10 -0.8 224,508 - MPMX19_04820 0.10 -1.1 224,508 - MPMX19_04820 0.10 -0.0 224,508 - MPMX19_04820 0.10 +0.0 224,753 + MPMX19_04820 0.40 +0.2 224,753 + MPMX19_04820 0.40 +0.2 224,753 + MPMX19_04820 0.40 -1.1 224,753 + MPMX19_04820 0.40 -0.9 224,753 + MPMX19_04820 0.40 -0.7 224,754 - MPMX19_04820 0.40 -1.5 224,754 - MPMX19_04820 0.40 -0.7 224,754 - MPMX19_04820 0.40 -0.5 224,852 + MPMX19_04820 0.52 -0.3 224,852 + MPMX19_04820 0.52 +1.6 224,852 + MPMX19_04820 0.52 +0.4 224,853 - MPMX19_04820 0.52 -1.7 224,972 + MPMX19_04820 0.67 +0.2 224,972 + MPMX19_04820 0.67 -1.6 224,972 + MPMX19_04820 0.67 -0.3 224,972 + MPMX19_04820 0.67 -1.0 224,972 + MPMX19_04820 0.67 +0.2 224,972 + MPMX19_04820 0.67 +1.0 224,972 + MPMX19_04820 0.67 -0.0 224,972 + MPMX19_04820 0.67 -1.9 224,972 + MPMX19_04820 0.67 -0.7 224,972 + MPMX19_04820 0.67 +1.4 224,973 - MPMX19_04820 0.67 +0.6 224,973 - MPMX19_04820 0.67 -1.0 224,973 - MPMX19_04820 0.67 -2.1 224,973 - MPMX19_04820 0.67 -0.5 224,973 - MPMX19_04820 0.67 +0.4 224,973 - MPMX19_04820 0.67 +0.4 225,080 + MPMX19_04820 0.80 -0.5 225,081 - MPMX19_04820 0.80 -0.8
Or see this region's nucleotide sequence