Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04816 and MPMX19_04817 are separated by 227 nucleotides MPMX19_04817 and MPMX19_04818 are separated by 261 nucleotides
MPMX19_04816: MPMX19_04816 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 220,920 to 221,624
_04816
MPMX19_04817: MPMX19_04817 - HTH-type transcriptional repressor NsrR, at 221,852 to 222,304
_04817
MPMX19_04818: MPMX19_04818 - Hydroxyacylglutathione hydrolase GloC, at 222,566 to 223,198
_04818
Position (kb) 221
222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 220.972 kb on + strand at 220.972 kb on + strand at 220.972 kb on + strand at 220.972 kb on + strand at 220.973 kb on - strand at 220.973 kb on - strand at 220.973 kb on - strand at 220.973 kb on - strand at 220.973 kb on - strand at 221.047 kb on - strand, within MPMX19_04816 at 221.131 kb on + strand, within MPMX19_04816 at 221.131 kb on + strand, within MPMX19_04816 at 221.131 kb on + strand, within MPMX19_04816 at 221.131 kb on + strand, within MPMX19_04816 at 221.131 kb on + strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.132 kb on - strand, within MPMX19_04816 at 221.156 kb on - strand, within MPMX19_04816 at 221.156 kb on - strand, within MPMX19_04816 at 221.156 kb on - strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.308 kb on + strand, within MPMX19_04816 at 221.309 kb on - strand, within MPMX19_04816 at 221.309 kb on - strand, within MPMX19_04816 at 221.309 kb on - strand, within MPMX19_04816 at 221.659 kb on + strand at 221.659 kb on + strand at 221.659 kb on + strand at 221.659 kb on + strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.733 kb on - strand at 221.816 kb on + strand at 221.838 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.850 kb on + strand at 221.850 kb on + strand at 221.850 kb on + strand at 222.200 kb on - strand, within MPMX19_04817 at 222.282 kb on + strand at 222.282 kb on + strand at 222.282 kb on + strand at 222.282 kb on + strand at 222.283 kb on - strand at 222.283 kb on - strand at 222.283 kb on - strand at 222.320 kb on - strand at 222.320 kb on - strand at 222.322 kb on + strand at 222.323 kb on - strand at 222.323 kb on - strand at 222.356 kb on + strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.372 kb on - strand at 222.381 kb on + strand at 222.382 kb on - strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.523 kb on + strand at 222.523 kb on + strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.197 kb on - strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 220,972 + +1.5 220,972 + +0.4 220,972 + -0.7 220,972 + -0.3 220,973 - -0.8 220,973 - +0.2 220,973 - +0.2 220,973 - +1.5 220,973 - -0.9 221,047 - MPMX19_04816 0.18 -0.2 221,131 + MPMX19_04816 0.30 -1.8 221,131 + MPMX19_04816 0.30 -0.5 221,131 + MPMX19_04816 0.30 +0.2 221,131 + MPMX19_04816 0.30 -0.2 221,131 + MPMX19_04816 0.30 -0.8 221,132 - MPMX19_04816 0.30 -0.6 221,132 - MPMX19_04816 0.30 -0.5 221,132 - MPMX19_04816 0.30 -1.4 221,132 - MPMX19_04816 0.30 +0.2 221,132 - MPMX19_04816 0.30 -0.0 221,132 - MPMX19_04816 0.30 -2.3 221,156 - MPMX19_04816 0.33 -1.3 221,156 - MPMX19_04816 0.33 -0.1 221,156 - MPMX19_04816 0.33 -1.2 221,308 + MPMX19_04816 0.55 +0.0 221,308 + MPMX19_04816 0.55 -0.5 221,308 + MPMX19_04816 0.55 -0.2 221,308 + MPMX19_04816 0.55 -0.2 221,308 + MPMX19_04816 0.55 -0.1 221,308 + MPMX19_04816 0.55 +0.0 221,308 + MPMX19_04816 0.55 +0.8 221,308 + MPMX19_04816 0.55 -1.6 221,308 + MPMX19_04816 0.55 +0.2 221,308 + MPMX19_04816 0.55 -0.2 221,308 + MPMX19_04816 0.55 -0.3 221,308 + MPMX19_04816 0.55 -0.5 221,308 + MPMX19_04816 0.55 -1.5 221,309 - MPMX19_04816 0.55 -0.1 221,309 - MPMX19_04816 0.55 -0.3 221,309 - MPMX19_04816 0.55 -0.7 221,659 + -0.5 221,659 + -0.8 221,659 + +0.4 221,659 + +0.2 221,660 - +0.6 221,660 - +0.5 221,660 - -2.8 221,660 - -0.5 221,660 - -0.2 221,660 - -0.3 221,660 - -1.7 221,733 - -0.8 221,816 + -1.0 221,838 + +0.0 221,847 + +1.4 221,847 + -1.3 221,847 + +0.2 221,847 + +0.5 221,847 + +1.4 221,850 + +0.6 221,850 + -1.7 221,850 + -1.1 222,200 - MPMX19_04817 0.77 +0.1 222,282 + -1.8 222,282 + +0.2 222,282 + -1.0 222,282 + +1.4 222,283 - -0.3 222,283 - -0.4 222,283 - -0.5 222,320 - -1.0 222,320 - -0.5 222,322 + -0.5 222,323 - -1.3 222,323 - -0.5 222,356 + +0.6 222,357 - -1.7 222,357 - -0.8 222,357 - -0.5 222,357 - +0.5 222,372 - +2.0 222,381 + +0.0 222,382 - -0.2 222,436 + +1.2 222,436 + -0.2 222,436 + +1.0 222,436 + -1.2 222,436 + -0.4 222,436 + -0.5 222,436 + +1.0 222,437 - -1.5 222,437 - -2.1 222,437 - -1.5 222,437 - -0.5 222,437 - -0.8 222,437 - -0.9 222,437 - -1.7 222,523 + -1.9 222,523 + -1.1 222,524 - -0.1 222,524 - -1.5 222,524 - -0.2 222,524 - +0.1 222,524 - -2.9 222,537 + +0.3 222,537 + -0.3 222,537 + +1.4 222,537 + -0.1 222,537 + +0.5 222,537 + -0.4 222,537 + -1.0 222,537 + -0.8 222,538 - -0.2 222,538 - +0.4 222,538 - -0.3 222,538 - -0.5 222,538 - +0.6 222,538 - +0.8 222,572 + +0.6 222,572 + +0.8 222,572 + -0.1 222,572 + +0.3 222,572 + -0.2 222,572 + +0.3 222,572 + -1.9 222,572 + -0.0 222,572 + +0.2 222,572 + -0.3 222,572 + -0.4 222,573 - -0.3 222,573 - -0.8 222,573 - -0.4 222,573 - -0.4 222,573 - -0.2 222,573 - -1.0 222,573 - -0.7 222,573 - +2.4 223,067 + MPMX19_04818 0.79 -0.7 223,067 + MPMX19_04818 0.79 -1.9 223,067 + MPMX19_04818 0.79 +0.0 223,067 + MPMX19_04818 0.79 +1.4 223,067 + MPMX19_04818 0.79 -0.5 223,067 + MPMX19_04818 0.79 -0.7 223,068 - MPMX19_04818 0.79 +0.3 223,068 - MPMX19_04818 0.79 -1.4 223,068 - MPMX19_04818 0.79 -0.7 223,068 - MPMX19_04818 0.79 +0.8 223,068 - MPMX19_04818 0.79 -1.2 223,068 - MPMX19_04818 0.79 -1.4 223,068 - MPMX19_04818 0.79 -2.5 223,068 - MPMX19_04818 0.79 -0.5 223,175 + -1.1 223,175 + -0.4 223,175 + +0.0 223,175 + -1.2 223,175 + -0.5 223,175 + -0.5 223,176 - -1.7 223,176 - -0.4 223,176 - -0.8 223,176 - -0.0 223,197 - -1.7 223,249 + -0.2 223,249 + -0.8 223,249 + -1.0 223,249 + +1.0 223,249 + -0.4 223,249 + +0.3 223,249 + -1.7 223,249 + +0.0 223,250 - -0.8 223,250 - -0.7 223,250 - -0.4 223,250 - +0.6 223,250 - -0.5 223,252 - -1.5
Or see this region's nucleotide sequence