Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04772 and MPMX19_04773 are separated by 495 nucleotides MPMX19_04773 and MPMX19_04774 are separated by 361 nucleotides MPMX19_04774 and MPMX19_04775 are separated by 153 nucleotides
MPMX19_04772: MPMX19_04772 - L-threonate dehydrogenase, at 164,099 to 165,016
_04772
MPMX19_04773: MPMX19_04773 - tRNA-Ser, at 165,512 to 165,605
_04773
MPMX19_04774: MPMX19_04774 - hypothetical protein, at 165,967 to 167,016
_04774
MPMX19_04775: MPMX19_04775 - hypothetical protein, at 167,170 to 169,359
_04775
Position (kb) 165
166
167
168 Strain fitness (log2 ratio) -2
-1
0
1
2 at 165.175 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.843 kb on - strand at 165.851 kb on + strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand at 166.285 kb on + strand, within MPMX19_04774 at 166.286 kb on - strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.390 kb on + strand, within MPMX19_04774 at 166.390 kb on + strand, within MPMX19_04774 at 166.390 kb on + strand, within MPMX19_04774 at 166.510 kb on + strand, within MPMX19_04774 at 166.510 kb on + strand, within MPMX19_04774 at 166.511 kb on - strand, within MPMX19_04774 at 166.564 kb on + strand, within MPMX19_04774 at 166.564 kb on + strand, within MPMX19_04774 at 166.565 kb on - strand, within MPMX19_04774 at 166.597 kb on + strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.739 kb on - strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.930 kb on + strand at 166.930 kb on + strand at 166.931 kb on - strand at 166.931 kb on - strand at 167.014 kb on + strand at 167.014 kb on + strand at 167.014 kb on + strand at 167.014 kb on + strand at 167.015 kb on - strand at 167.015 kb on - strand at 167.015 kb on - strand at 167.028 kb on + strand at 167.029 kb on - strand at 167.050 kb on - strand at 167.050 kb on - strand at 167.050 kb on - strand at 167.692 kb on + strand, within MPMX19_04775 at 167.692 kb on + strand, within MPMX19_04775 at 167.692 kb on + strand, within MPMX19_04775 at 167.692 kb on + strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 165,175 + +0.1 165,391 + -0.2 165,391 + +0.0 165,391 + +0.5 165,391 + -2.2 165,391 + -0.3 165,392 - -0.3 165,392 - -0.5 165,392 - -2.0 165,392 - -1.0 165,392 - -0.8 165,778 + -0.7 165,778 + -0.2 165,778 + -1.5 165,778 + -0.1 165,778 + -1.4 165,778 + +1.6 165,778 + -0.6 165,778 + +0.3 165,779 - +0.0 165,779 - -0.6 165,779 - +0.7 165,779 - -0.6 165,779 - -1.3 165,779 - -1.1 165,843 - -0.7 165,851 + -1.1 165,852 - -0.8 165,852 - -0.6 165,852 - -0.1 165,852 - -0.3 165,852 - +0.2 165,852 - +0.5 165,900 - -0.7 165,900 - -0.9 165,900 - -0.7 165,900 - -0.3 166,285 + MPMX19_04774 0.30 -0.3 166,286 - MPMX19_04774 0.30 +1.4 166,333 + MPMX19_04774 0.35 -0.3 166,333 + MPMX19_04774 0.35 -0.8 166,333 + MPMX19_04774 0.35 -0.2 166,333 + MPMX19_04774 0.35 -0.9 166,333 + MPMX19_04774 0.35 -0.8 166,333 + MPMX19_04774 0.35 -0.3 166,333 + MPMX19_04774 0.35 -0.1 166,333 + MPMX19_04774 0.35 -0.9 166,334 - MPMX19_04774 0.35 -0.3 166,334 - MPMX19_04774 0.35 -0.3 166,334 - MPMX19_04774 0.35 -0.7 166,334 - MPMX19_04774 0.35 -0.1 166,334 - MPMX19_04774 0.35 +0.2 166,366 + MPMX19_04774 0.38 -0.1 166,366 + MPMX19_04774 0.38 -1.2 166,366 + MPMX19_04774 0.38 -1.8 166,366 + MPMX19_04774 0.38 -1.3 166,366 + MPMX19_04774 0.38 -2.3 166,366 + MPMX19_04774 0.38 +2.2 166,366 + MPMX19_04774 0.38 -1.1 166,366 + MPMX19_04774 0.38 -0.6 166,366 + MPMX19_04774 0.38 -0.3 166,366 + MPMX19_04774 0.38 -1.7 166,366 + MPMX19_04774 0.38 -0.4 166,367 - MPMX19_04774 0.38 -0.8 166,367 - MPMX19_04774 0.38 +2.5 166,367 - MPMX19_04774 0.38 +1.7 166,367 - MPMX19_04774 0.38 -0.2 166,367 - MPMX19_04774 0.38 -0.5 166,367 - MPMX19_04774 0.38 +1.7 166,367 - MPMX19_04774 0.38 -1.4 166,367 - MPMX19_04774 0.38 -0.3 166,367 - MPMX19_04774 0.38 +1.2 166,367 - MPMX19_04774 0.38 -0.6 166,367 - MPMX19_04774 0.38 -0.8 166,367 - MPMX19_04774 0.38 +0.0 166,367 - MPMX19_04774 0.38 -0.8 166,390 + MPMX19_04774 0.40 -0.5 166,390 + MPMX19_04774 0.40 +2.3 166,390 + MPMX19_04774 0.40 -0.5 166,510 + MPMX19_04774 0.52 -0.1 166,510 + MPMX19_04774 0.52 -0.8 166,511 - MPMX19_04774 0.52 -0.0 166,564 + MPMX19_04774 0.57 -1.5 166,564 + MPMX19_04774 0.57 +1.2 166,565 - MPMX19_04774 0.57 -1.1 166,597 + MPMX19_04774 0.60 -0.5 166,598 - MPMX19_04774 0.60 -0.8 166,598 - MPMX19_04774 0.60 +1.2 166,598 - MPMX19_04774 0.60 -1.4 166,598 - MPMX19_04774 0.60 -0.1 166,739 - MPMX19_04774 0.74 -2.3 166,801 + MPMX19_04774 0.79 +0.5 166,801 + MPMX19_04774 0.79 -1.1 166,801 + MPMX19_04774 0.79 -1.1 166,801 + MPMX19_04774 0.79 +0.2 166,801 + MPMX19_04774 0.79 +0.0 166,802 - MPMX19_04774 0.80 -0.3 166,802 - MPMX19_04774 0.80 +0.2 166,802 - MPMX19_04774 0.80 -1.1 166,802 - MPMX19_04774 0.80 -0.3 166,930 + -0.8 166,930 + -0.8 166,931 - +0.1 166,931 - -0.5 167,014 + -0.0 167,014 + -0.2 167,014 + -0.1 167,014 + -1.3 167,015 - +0.3 167,015 - -0.5 167,015 - +0.8 167,028 + -0.1 167,029 - -0.1 167,050 - +0.5 167,050 - +0.3 167,050 - +1.6 167,692 + MPMX19_04775 0.24 -1.3 167,692 + MPMX19_04775 0.24 -0.3 167,692 + MPMX19_04775 0.24 +0.0 167,692 + MPMX19_04775 0.24 -0.1 167,693 - MPMX19_04775 0.24 -0.1 167,693 - MPMX19_04775 0.24 +0.2 167,693 - MPMX19_04775 0.24 +0.6 167,693 - MPMX19_04775 0.24 -0.1 167,693 - MPMX19_04775 0.24 -2.3
Or see this region's nucleotide sequence