Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04767

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04766 and MPMX19_04767 are separated by 221 nucleotidesMPMX19_04767 and MPMX19_04768 are separated by 25 nucleotidesMPMX19_04768 and MPMX19_04769 overlap by 4 nucleotides MPMX19_04766: MPMX19_04766 - Glycine cleavage system transcriptional activator, at 156,987 to 157,934 _04766 MPMX19_04767: MPMX19_04767 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 158,156 to 158,905 _04767 MPMX19_04768: MPMX19_04768 - Apulose-4-phosphate transketolase subunit A, at 158,931 to 159,788 _04768 MPMX19_04769: MPMX19_04769 - Apulose-4-phosphate transketolase subunit B, at 159,785 to 160,801 _04769 Position (kb) 158 159Strain fitness (log2 ratio) -2 -1 0 1 2at 157.299 kb on + strand, within MPMX19_04766at 157.300 kb on - strand, within MPMX19_04766at 157.364 kb on + strand, within MPMX19_04766at 157.364 kb on + strand, within MPMX19_04766at 157.365 kb on - strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.496 kb on - strand, within MPMX19_04766at 157.496 kb on - strand, within MPMX19_04766at 157.496 kb on - strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.976 kb on - strandat 158.008 kb on + strandat 158.009 kb on - strandat 158.468 kb on + strand, within MPMX19_04767at 158.469 kb on - strand, within MPMX19_04767at 158.469 kb on - strand, within MPMX19_04767at 158.507 kb on + strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.562 kb on + strand, within MPMX19_04767at 158.562 kb on + strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.618 kb on + strand, within MPMX19_04767at 158.619 kb on - strand, within MPMX19_04767at 158.855 kb on + strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 159.042 kb on + strand, within MPMX19_04768at 159.042 kb on + strand, within MPMX19_04768at 159.042 kb on + strand, within MPMX19_04768at 159.042 kb on + strand, within MPMX19_04768at 159.043 kb on - strand, within MPMX19_04768at 159.043 kb on - strand, within MPMX19_04768at 159.043 kb on - strand, within MPMX19_04768at 159.043 kb on - strand, within MPMX19_04768at 159.043 kb on - strand, within MPMX19_04768at 159.044 kb on + strand, within MPMX19_04768at 159.044 kb on + strand, within MPMX19_04768at 159.045 kb on - strand, within MPMX19_04768at 159.087 kb on + strand, within MPMX19_04768at 159.087 kb on + strand, within MPMX19_04768at 159.087 kb on + strand, within MPMX19_04768at 159.088 kb on - strand, within MPMX19_04768at 159.088 kb on - strand, within MPMX19_04768at 159.105 kb on + strand, within MPMX19_04768at 159.106 kb on - strand, within MPMX19_04768at 159.166 kb on - strand, within MPMX19_04768at 159.181 kb on - strand, within MPMX19_04768at 159.181 kb on - strand, within MPMX19_04768at 159.231 kb on + strand, within MPMX19_04768at 159.231 kb on + strand, within MPMX19_04768at 159.231 kb on + strand, within MPMX19_04768at 159.232 kb on - strand, within MPMX19_04768at 159.232 kb on - strand, within MPMX19_04768at 159.276 kb on + strand, within MPMX19_04768at 159.277 kb on - strand, within MPMX19_04768at 159.277 kb on - strand, within MPMX19_04768at 159.277 kb on - strand, within MPMX19_04768at 159.381 kb on + strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.450 kb on + strand, within MPMX19_04768at 159.450 kb on + strand, within MPMX19_04768at 159.450 kb on + strand, within MPMX19_04768at 159.450 kb on + strand, within MPMX19_04768at 159.451 kb on - strand, within MPMX19_04768at 159.451 kb on - strand, within MPMX19_04768at 159.451 kb on - strand, within MPMX19_04768at 159.904 kb on + strand, within MPMX19_04769at 159.905 kb on - strand, within MPMX19_04769at 159.905 kb on - strand, within MPMX19_04769at 159.905 kb on - strand, within MPMX19_04769at 159.905 kb on - strand, within MPMX19_04769at 159.905 kb on - strand, within MPMX19_04769

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
157,299 + MPMX19_04766 0.33 -0.3
157,300 - MPMX19_04766 0.33 -0.9
157,364 + MPMX19_04766 0.40 -0.1
157,364 + MPMX19_04766 0.40 +0.1
157,365 - MPMX19_04766 0.40 -1.3
157,495 + MPMX19_04766 0.54 +0.1
157,495 + MPMX19_04766 0.54 -1.3
157,495 + MPMX19_04766 0.54 -1.0
157,495 + MPMX19_04766 0.54 -0.6
157,496 - MPMX19_04766 0.54 -0.4
157,496 - MPMX19_04766 0.54 -1.1
157,496 - MPMX19_04766 0.54 +0.1
157,732 + MPMX19_04766 0.79 +1.7
157,732 + MPMX19_04766 0.79 +0.9
157,732 + MPMX19_04766 0.79 +0.7
157,732 + MPMX19_04766 0.79 -0.1
157,732 + MPMX19_04766 0.79 -0.7
157,732 + MPMX19_04766 0.79 +1.1
157,732 + MPMX19_04766 0.79 -0.7
157,733 - MPMX19_04766 0.79 +1.7
157,733 - MPMX19_04766 0.79 -0.3
157,733 - MPMX19_04766 0.79 +0.4
157,733 - MPMX19_04766 0.79 +0.3
157,733 - MPMX19_04766 0.79 +1.0
157,733 - MPMX19_04766 0.79 +1.4
157,976 - +0.9
158,008 + +0.7
158,009 - -0.0
158,468 + MPMX19_04767 0.42 +1.2
158,469 - MPMX19_04767 0.42 +0.2
158,469 - MPMX19_04767 0.42 -0.4
158,507 + MPMX19_04767 0.47 +0.2
158,508 - MPMX19_04767 0.47 -0.4
158,508 - MPMX19_04767 0.47 -1.0
158,508 - MPMX19_04767 0.47 -0.7
158,508 - MPMX19_04767 0.47 +0.2
158,508 - MPMX19_04767 0.47 +0.3
158,508 - MPMX19_04767 0.47 -1.6
158,508 - MPMX19_04767 0.47 +2.6
158,508 - MPMX19_04767 0.47 +1.2
158,562 + MPMX19_04767 0.54 -0.3
158,562 + MPMX19_04767 0.54 -0.4
158,563 - MPMX19_04767 0.54 -0.3
158,563 - MPMX19_04767 0.54 +0.3
158,563 - MPMX19_04767 0.54 -0.1
158,563 - MPMX19_04767 0.54 +0.5
158,563 - MPMX19_04767 0.54 -0.4
158,563 - MPMX19_04767 0.54 -0.4
158,563 - MPMX19_04767 0.54 -2.4
158,563 - MPMX19_04767 0.54 -0.4
158,563 - MPMX19_04767 0.54 +0.8
158,563 - MPMX19_04767 0.54 -1.3
158,563 - MPMX19_04767 0.54 -0.4
158,563 - MPMX19_04767 0.54 +0.2
158,563 - MPMX19_04767 0.54 -0.8
158,563 - MPMX19_04767 0.54 -0.0
158,618 + MPMX19_04767 0.62 +2.2
158,619 - MPMX19_04767 0.62 -1.4
158,855 + +0.7
158,856 - +0.4
158,856 - +2.7
158,856 - +0.9
158,856 - +0.9
158,856 - -0.1
158,856 - -0.2
158,856 - -0.1
159,042 + MPMX19_04768 0.13 -0.2
159,042 + MPMX19_04768 0.13 +1.0
159,042 + MPMX19_04768 0.13 -0.4
159,042 + MPMX19_04768 0.13 -1.1
159,043 - MPMX19_04768 0.13 -0.3
159,043 - MPMX19_04768 0.13 +0.2
159,043 - MPMX19_04768 0.13 -0.3
159,043 - MPMX19_04768 0.13 -0.4
159,043 - MPMX19_04768 0.13 -0.8
159,044 + MPMX19_04768 0.13 -1.8
159,044 + MPMX19_04768 0.13 -2.7
159,045 - MPMX19_04768 0.13 -0.8
159,087 + MPMX19_04768 0.18 -0.6
159,087 + MPMX19_04768 0.18 -0.1
159,087 + MPMX19_04768 0.18 -0.8
159,088 - MPMX19_04768 0.18 +0.2
159,088 - MPMX19_04768 0.18 -1.7
159,105 + MPMX19_04768 0.20 -0.7
159,106 - MPMX19_04768 0.20 -1.3
159,166 - MPMX19_04768 0.27 -0.6
159,181 - MPMX19_04768 0.29 +1.3
159,181 - MPMX19_04768 0.29 -0.7
159,231 + MPMX19_04768 0.35 -0.1
159,231 + MPMX19_04768 0.35 -0.3
159,231 + MPMX19_04768 0.35 -1.4
159,232 - MPMX19_04768 0.35 -0.4
159,232 - MPMX19_04768 0.35 -0.6
159,276 + MPMX19_04768 0.40 -0.7
159,277 - MPMX19_04768 0.40 -0.6
159,277 - MPMX19_04768 0.40 -1.3
159,277 - MPMX19_04768 0.40 -0.3
159,381 + MPMX19_04768 0.52 -0.2
159,382 - MPMX19_04768 0.53 -1.1
159,382 - MPMX19_04768 0.53 +0.1
159,382 - MPMX19_04768 0.53 +0.6
159,382 - MPMX19_04768 0.53 -1.2
159,382 - MPMX19_04768 0.53 -1.4
159,382 - MPMX19_04768 0.53 +1.1
159,382 - MPMX19_04768 0.53 -0.1
159,382 - MPMX19_04768 0.53 -0.1
159,450 + MPMX19_04768 0.60 -1.3
159,450 + MPMX19_04768 0.60 -1.1
159,450 + MPMX19_04768 0.60 +0.9
159,450 + MPMX19_04768 0.60 +1.2
159,451 - MPMX19_04768 0.61 -0.3
159,451 - MPMX19_04768 0.61 +1.0
159,451 - MPMX19_04768 0.61 +1.2
159,904 + MPMX19_04769 0.12 -0.7
159,905 - MPMX19_04769 0.12 +0.9
159,905 - MPMX19_04769 0.12 +0.2
159,905 - MPMX19_04769 0.12 -1.4
159,905 - MPMX19_04769 0.12 -2.2
159,905 - MPMX19_04769 0.12 -1.0

Or see this region's nucleotide sequence