Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04766

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04765 and MPMX19_04766 overlap by 4 nucleotidesMPMX19_04766 and MPMX19_04767 are separated by 221 nucleotidesMPMX19_04767 and MPMX19_04768 are separated by 25 nucleotides MPMX19_04765: MPMX19_04765 - HTH-type transcriptional repressor CytR, at 155,929 to 156,990 _04765 MPMX19_04766: MPMX19_04766 - Glycine cleavage system transcriptional activator, at 156,987 to 157,934 _04766 MPMX19_04767: MPMX19_04767 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 158,156 to 158,905 _04767 MPMX19_04768: MPMX19_04768 - Apulose-4-phosphate transketolase subunit A, at 158,931 to 159,788 _04768 Position (kb) 156 157 158Strain fitness (log2 ratio) -2 -1 0 1 2at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765at 156.727 kb on + strand, within MPMX19_04765at 156.727 kb on + strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.893 kb on - strandat 156.893 kb on - strandat 156.988 kb on + strandat 156.988 kb on + strandat 156.988 kb on + strandat 156.989 kb on - strandat 156.989 kb on - strandat 156.989 kb on - strandat 156.989 kb on - strandat 156.989 kb on - strandat 157.024 kb on + strandat 157.025 kb on - strandat 157.299 kb on + strand, within MPMX19_04766at 157.300 kb on - strand, within MPMX19_04766at 157.364 kb on + strand, within MPMX19_04766at 157.364 kb on + strand, within MPMX19_04766at 157.365 kb on - strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.496 kb on - strand, within MPMX19_04766at 157.496 kb on - strand, within MPMX19_04766at 157.496 kb on - strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.976 kb on - strandat 158.008 kb on + strandat 158.009 kb on - strandat 158.468 kb on + strand, within MPMX19_04767at 158.469 kb on - strand, within MPMX19_04767at 158.469 kb on - strand, within MPMX19_04767at 158.507 kb on + strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.508 kb on - strand, within MPMX19_04767at 158.562 kb on + strand, within MPMX19_04767at 158.562 kb on + strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.563 kb on - strand, within MPMX19_04767at 158.618 kb on + strand, within MPMX19_04767at 158.619 kb on - strand, within MPMX19_04767at 158.855 kb on + strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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156,406 + MPMX19_04765 0.45 -0.3
156,406 + MPMX19_04765 0.45 -1.5
156,406 + MPMX19_04765 0.45 -0.6
156,406 + MPMX19_04765 0.45 -0.4
156,406 + MPMX19_04765 0.45 +0.1
156,406 + MPMX19_04765 0.45 -1.0
156,406 + MPMX19_04765 0.45 -2.4
156,406 + MPMX19_04765 0.45 +0.1
156,407 - MPMX19_04765 0.45 +0.5
156,407 - MPMX19_04765 0.45 +1.3
156,407 - MPMX19_04765 0.45 -0.5
156,407 - MPMX19_04765 0.45 -0.9
156,407 - MPMX19_04765 0.45 +0.7
156,418 + MPMX19_04765 0.46 -0.7
156,418 + MPMX19_04765 0.46 +0.3
156,418 + MPMX19_04765 0.46 +1.2
156,418 + MPMX19_04765 0.46 -1.7
156,418 + MPMX19_04765 0.46 -0.4
156,419 - MPMX19_04765 0.46 +0.5
156,419 - MPMX19_04765 0.46 -0.9
156,419 - MPMX19_04765 0.46 +0.5
156,419 - MPMX19_04765 0.46 +1.1
156,727 + MPMX19_04765 0.75 -0.1
156,727 + MPMX19_04765 0.75 +0.6
156,728 - MPMX19_04765 0.75 -1.9
156,728 - MPMX19_04765 0.75 -0.5
156,728 - MPMX19_04765 0.75 +0.0
156,728 - MPMX19_04765 0.75 -0.9
156,728 - MPMX19_04765 0.75 -1.1
156,728 - MPMX19_04765 0.75 -2.0
156,728 - MPMX19_04765 0.75 -0.3
156,893 - -0.1
156,893 - +1.5
156,988 + -1.0
156,988 + -0.1
156,988 + -0.9
156,989 - +0.7
156,989 - -1.7
156,989 - -1.3
156,989 - +0.9
156,989 - +1.1
157,024 + -0.4
157,025 - -0.3
157,299 + MPMX19_04766 0.33 -0.3
157,300 - MPMX19_04766 0.33 -0.9
157,364 + MPMX19_04766 0.40 -0.1
157,364 + MPMX19_04766 0.40 +0.1
157,365 - MPMX19_04766 0.40 -1.3
157,495 + MPMX19_04766 0.54 +0.1
157,495 + MPMX19_04766 0.54 -1.3
157,495 + MPMX19_04766 0.54 -1.0
157,495 + MPMX19_04766 0.54 -0.6
157,496 - MPMX19_04766 0.54 -0.4
157,496 - MPMX19_04766 0.54 -1.1
157,496 - MPMX19_04766 0.54 +0.1
157,732 + MPMX19_04766 0.79 +1.7
157,732 + MPMX19_04766 0.79 +0.9
157,732 + MPMX19_04766 0.79 +0.7
157,732 + MPMX19_04766 0.79 -0.1
157,732 + MPMX19_04766 0.79 -0.7
157,732 + MPMX19_04766 0.79 +1.1
157,732 + MPMX19_04766 0.79 -0.7
157,733 - MPMX19_04766 0.79 +1.7
157,733 - MPMX19_04766 0.79 -0.3
157,733 - MPMX19_04766 0.79 +0.4
157,733 - MPMX19_04766 0.79 +0.3
157,733 - MPMX19_04766 0.79 +1.0
157,733 - MPMX19_04766 0.79 +1.4
157,976 - +0.9
158,008 + +0.7
158,009 - -0.0
158,468 + MPMX19_04767 0.42 +1.2
158,469 - MPMX19_04767 0.42 +0.2
158,469 - MPMX19_04767 0.42 -0.4
158,507 + MPMX19_04767 0.47 +0.2
158,508 - MPMX19_04767 0.47 -0.4
158,508 - MPMX19_04767 0.47 -1.0
158,508 - MPMX19_04767 0.47 -0.7
158,508 - MPMX19_04767 0.47 +0.2
158,508 - MPMX19_04767 0.47 +0.3
158,508 - MPMX19_04767 0.47 -1.6
158,508 - MPMX19_04767 0.47 +2.6
158,508 - MPMX19_04767 0.47 +1.2
158,562 + MPMX19_04767 0.54 -0.3
158,562 + MPMX19_04767 0.54 -0.4
158,563 - MPMX19_04767 0.54 -0.3
158,563 - MPMX19_04767 0.54 +0.3
158,563 - MPMX19_04767 0.54 -0.1
158,563 - MPMX19_04767 0.54 +0.5
158,563 - MPMX19_04767 0.54 -0.4
158,563 - MPMX19_04767 0.54 -0.4
158,563 - MPMX19_04767 0.54 -2.4
158,563 - MPMX19_04767 0.54 -0.4
158,563 - MPMX19_04767 0.54 +0.8
158,563 - MPMX19_04767 0.54 -1.3
158,563 - MPMX19_04767 0.54 -0.4
158,563 - MPMX19_04767 0.54 +0.2
158,563 - MPMX19_04767 0.54 -0.8
158,563 - MPMX19_04767 0.54 -0.0
158,618 + MPMX19_04767 0.62 +2.2
158,619 - MPMX19_04767 0.62 -1.4
158,855 + +0.7
158,856 - +0.4
158,856 - +2.7
158,856 - +0.9
158,856 - +0.9
158,856 - -0.1
158,856 - -0.2
158,856 - -0.1

Or see this region's nucleotide sequence