Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04744 and MPMX19_04745 are separated by 366 nucleotides MPMX19_04745 and MPMX19_04746 are separated by 192 nucleotides MPMX19_04746 and MPMX19_04747 are separated by 4 nucleotides
MPMX19_04744: MPMX19_04744 - Formyltransferase/hydrolase complex Fhc subunit C, at 135,927 to 136,736
_04744
MPMX19_04745: MPMX19_04745 - HTH-type transcriptional regulator CdhR, at 137,103 to 138,122
_04745
MPMX19_04746: MPMX19_04746 - hypothetical protein, at 138,315 to 138,812
_04746
MPMX19_04747: MPMX19_04747 - hypothetical protein, at 138,817 to 139,518
_04747
Position (kb) 137
138
139 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.446 kb on + strand, within MPMX19_04744 at 136.789 kb on + strand at 136.789 kb on + strand at 136.789 kb on + strand at 136.789 kb on + strand at 136.790 kb on - strand at 136.796 kb on + strand at 136.902 kb on + strand at 136.902 kb on + strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.943 kb on - strand at 136.943 kb on - strand at 136.956 kb on + strand at 136.956 kb on + strand at 136.957 kb on - strand at 137.069 kb on + strand at 137.069 kb on + strand at 137.069 kb on + strand at 137.069 kb on + strand at 137.069 kb on + strand at 137.070 kb on - strand at 137.070 kb on - strand at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.382 kb on + strand, within MPMX19_04745 at 137.382 kb on + strand, within MPMX19_04745 at 137.382 kb on + strand, within MPMX19_04745 at 137.382 kb on + strand, within MPMX19_04745 at 137.383 kb on - strand, within MPMX19_04745 at 137.383 kb on - strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.913 kb on + strand, within MPMX19_04745 at 137.913 kb on + strand, within MPMX19_04745 at 137.913 kb on + strand, within MPMX19_04745 at 137.914 kb on - strand, within MPMX19_04745 at 138.240 kb on - strand at 138.240 kb on - strand at 138.244 kb on + strand at 138.244 kb on + strand at 138.244 kb on + strand at 138.244 kb on + strand at 138.245 kb on - strand at 138.245 kb on - strand at 138.319 kb on + strand at 138.320 kb on - strand at 138.320 kb on - strand at 138.320 kb on - strand at 138.320 kb on - strand at 138.399 kb on + strand, within MPMX19_04746 at 138.453 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.552 kb on + strand, within MPMX19_04746 at 138.552 kb on + strand, within MPMX19_04746 at 138.552 kb on + strand, within MPMX19_04746 at 138.553 kb on - strand, within MPMX19_04746 at 138.553 kb on - strand, within MPMX19_04746 at 138.553 kb on - strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 136,446 + MPMX19_04744 0.64 -1.3 136,789 + +0.3 136,789 + +1.1 136,789 + -0.4 136,789 + -0.9 136,790 - -0.7 136,796 + +0.1 136,902 + -0.3 136,902 + +0.4 136,903 - -0.1 136,903 - -1.0 136,903 - +0.4 136,903 - -0.4 136,903 - -1.3 136,903 - -0.5 136,903 - +0.4 136,903 - +0.3 136,903 - -1.4 136,903 - -2.2 136,942 + -0.3 136,942 + -0.5 136,942 + -1.2 136,942 + -0.2 136,942 + -0.1 136,942 + -0.3 136,942 + -0.7 136,943 - -0.4 136,943 - -0.3 136,956 + +0.6 136,956 + +1.0 136,957 - -0.6 137,069 + +0.1 137,069 + +1.7 137,069 + -0.7 137,069 + -0.3 137,069 + -0.2 137,070 - -1.1 137,070 - -1.4 137,244 + MPMX19_04745 0.14 +0.1 137,244 + MPMX19_04745 0.14 +0.3 137,244 + MPMX19_04745 0.14 +0.1 137,244 + MPMX19_04745 0.14 +0.7 137,244 + MPMX19_04745 0.14 +0.9 137,244 + MPMX19_04745 0.14 -1.0 137,244 + MPMX19_04745 0.14 -1.6 137,244 + MPMX19_04745 0.14 -0.2 137,244 + MPMX19_04745 0.14 -1.0 137,244 + MPMX19_04745 0.14 +1.3 137,245 - MPMX19_04745 0.14 -0.0 137,245 - MPMX19_04745 0.14 -0.3 137,245 - MPMX19_04745 0.14 +1.3 137,245 - MPMX19_04745 0.14 -0.3 137,245 - MPMX19_04745 0.14 -1.0 137,245 - MPMX19_04745 0.14 -0.4 137,245 - MPMX19_04745 0.14 +0.5 137,382 + MPMX19_04745 0.27 -0.5 137,382 + MPMX19_04745 0.27 +0.7 137,382 + MPMX19_04745 0.27 -1.4 137,382 + MPMX19_04745 0.27 -1.0 137,383 - MPMX19_04745 0.27 -1.1 137,383 - MPMX19_04745 0.27 +0.4 137,886 + MPMX19_04745 0.77 -1.6 137,886 + MPMX19_04745 0.77 -0.6 137,886 + MPMX19_04745 0.77 +1.0 137,886 + MPMX19_04745 0.77 +0.5 137,886 + MPMX19_04745 0.77 -1.1 137,886 + MPMX19_04745 0.77 +0.7 137,886 + MPMX19_04745 0.77 -0.9 137,886 + MPMX19_04745 0.77 -0.7 137,886 + MPMX19_04745 0.77 -1.4 137,886 + MPMX19_04745 0.77 +0.4 137,886 + MPMX19_04745 0.77 -1.6 137,887 - MPMX19_04745 0.77 -0.4 137,887 - MPMX19_04745 0.77 -1.6 137,887 - MPMX19_04745 0.77 +0.3 137,887 - MPMX19_04745 0.77 +0.6 137,887 - MPMX19_04745 0.77 -2.1 137,887 - MPMX19_04745 0.77 +1.1 137,887 - MPMX19_04745 0.77 +0.7 137,887 - MPMX19_04745 0.77 -0.7 137,887 - MPMX19_04745 0.77 +0.2 137,887 - MPMX19_04745 0.77 -1.1 137,887 - MPMX19_04745 0.77 -0.9 137,887 - MPMX19_04745 0.77 -0.6 137,887 - MPMX19_04745 0.77 -0.8 137,887 - MPMX19_04745 0.77 -0.8 137,910 + MPMX19_04745 0.79 -0.0 137,910 + MPMX19_04745 0.79 -1.7 137,910 + MPMX19_04745 0.79 +0.1 137,910 + MPMX19_04745 0.79 +0.1 137,910 + MPMX19_04745 0.79 +0.6 137,910 + MPMX19_04745 0.79 -1.7 137,910 + MPMX19_04745 0.79 -0.7 137,910 + MPMX19_04745 0.79 -0.9 137,911 - MPMX19_04745 0.79 +1.7 137,911 - MPMX19_04745 0.79 -1.1 137,911 - MPMX19_04745 0.79 +1.1 137,911 - MPMX19_04745 0.79 -1.3 137,911 - MPMX19_04745 0.79 +0.3 137,911 - MPMX19_04745 0.79 -0.1 137,911 - MPMX19_04745 0.79 -0.8 137,911 - MPMX19_04745 0.79 +0.4 137,911 - MPMX19_04745 0.79 +0.5 137,913 + MPMX19_04745 0.79 -1.3 137,913 + MPMX19_04745 0.79 -0.3 137,913 + MPMX19_04745 0.79 -0.9 137,914 - MPMX19_04745 0.80 -0.9 138,240 - -0.3 138,240 - +0.7 138,244 + -0.9 138,244 + -0.1 138,244 + +2.2 138,244 + -1.1 138,245 - +2.1 138,245 - -0.6 138,319 + -1.3 138,320 - -0.9 138,320 - -1.7 138,320 - -0.0 138,320 - +0.7 138,399 + MPMX19_04746 0.17 -1.1 138,453 + MPMX19_04746 0.28 -0.4 138,544 + MPMX19_04746 0.46 -0.2 138,544 + MPMX19_04746 0.46 -0.2 138,544 + MPMX19_04746 0.46 -0.7 138,544 + MPMX19_04746 0.46 -1.9 138,544 + MPMX19_04746 0.46 -2.1 138,544 + MPMX19_04746 0.46 -0.4 138,544 + MPMX19_04746 0.46 +1.7 138,544 + MPMX19_04746 0.46 +1.2 138,545 - MPMX19_04746 0.46 +0.3 138,545 - MPMX19_04746 0.46 +1.3 138,545 - MPMX19_04746 0.46 +0.7 138,545 - MPMX19_04746 0.46 -0.3 138,545 - MPMX19_04746 0.46 +0.1 138,545 - MPMX19_04746 0.46 +0.5 138,545 - MPMX19_04746 0.46 +1.3 138,545 - MPMX19_04746 0.46 -2.3 138,545 - MPMX19_04746 0.46 +0.4 138,545 - MPMX19_04746 0.46 +0.1 138,545 - MPMX19_04746 0.46 +1.0 138,552 + MPMX19_04746 0.48 -1.0 138,552 + MPMX19_04746 0.48 -0.4 138,552 + MPMX19_04746 0.48 -1.9 138,553 - MPMX19_04746 0.48 -0.3 138,553 - MPMX19_04746 0.48 +0.1 138,553 - MPMX19_04746 0.48 -1.7 138,699 + MPMX19_04746 0.77 -0.0 138,699 + MPMX19_04746 0.77 -0.0 138,699 + MPMX19_04746 0.77 -1.3 138,699 + MPMX19_04746 0.77 +1.0 138,699 + MPMX19_04746 0.77 +0.4 138,699 + MPMX19_04746 0.77 +0.5 138,699 + MPMX19_04746 0.77 -0.7 138,699 + MPMX19_04746 0.77 -0.1 138,699 + MPMX19_04746 0.77 +0.1 138,700 - MPMX19_04746 0.77 -1.1 138,700 - MPMX19_04746 0.77 +0.3 138,700 - MPMX19_04746 0.77 -2.7 138,700 - MPMX19_04746 0.77 -0.9 138,700 - MPMX19_04746 0.77 -0.3
Or see this region's nucleotide sequence