Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04741

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04740 and MPMX19_04741 are separated by 346 nucleotidesMPMX19_04741 and MPMX19_04742 overlap by 8 nucleotides MPMX19_04740: MPMX19_04740 - hypothetical protein, at 130,776 to 131,810 _04740 MPMX19_04741: MPMX19_04741 - Formyltransferase/hydrolase complex Fhc subunit B, at 132,157 to 133,353 _04741 MPMX19_04742: MPMX19_04742 - Formyltransferase/hydrolase complex Fhc subunit A, at 133,346 to 135,034 _04742 Position (kb) 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 131.186 kb on - strand, within MPMX19_04740at 131.186 kb on - strand, within MPMX19_04740at 131.186 kb on - strand, within MPMX19_04740at 131.596 kb on + strand, within MPMX19_04740at 131.596 kb on + strand, within MPMX19_04740at 131.596 kb on + strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.815 kb on + strandat 131.815 kb on + strandat 131.816 kb on - strandat 131.816 kb on - strandat 131.816 kb on - strandat 131.816 kb on - strandat 131.853 kb on + strandat 131.858 kb on - strandat 131.858 kb on - strandat 131.875 kb on + strandat 131.911 kb on - strandat 131.990 kb on - strandat 131.993 kb on + strandat 132.031 kb on + strandat 132.031 kb on + strandat 132.032 kb on - strandat 132.043 kb on + strandat 132.044 kb on - strandat 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.950 kb on - strand, within MPMX19_04741at 132.950 kb on - strand, within MPMX19_04741at 132.950 kb on - strand, within MPMX19_04741at 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.430 kb on + strandat 133.430 kb on + strandat 133.430 kb on + strandat 133.430 kb on + strandat 133.431 kb on - strandat 133.431 kb on - strandat 133.431 kb on - strandat 133.679 kb on + strand, within MPMX19_04742at 133.680 kb on - strand, within MPMX19_04742at 133.680 kb on - strand, within MPMX19_04742at 133.695 kb on - strand, within MPMX19_04742at 133.695 kb on - strand, within MPMX19_04742at 133.695 kb on - strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.862 kb on + strand, within MPMX19_04742at 133.862 kb on + strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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131,186 - MPMX19_04740 0.40 +1.0
131,186 - MPMX19_04740 0.40 -1.0
131,186 - MPMX19_04740 0.40 +0.9
131,596 + MPMX19_04740 0.79 +0.6
131,596 + MPMX19_04740 0.79 -1.4
131,596 + MPMX19_04740 0.79 +0.4
131,597 - MPMX19_04740 0.79 -0.5
131,597 - MPMX19_04740 0.79 -1.1
131,597 - MPMX19_04740 0.79 +0.1
131,597 - MPMX19_04740 0.79 +0.1
131,597 - MPMX19_04740 0.79 +0.0
131,597 - MPMX19_04740 0.79 -0.2
131,815 + +0.3
131,815 + +0.8
131,816 - -1.5
131,816 - -0.2
131,816 - +0.1
131,816 - -0.9
131,853 + -0.6
131,858 - -1.1
131,858 - +0.9
131,875 + +0.4
131,911 - -1.9
131,990 - -0.9
131,993 + +3.1
132,031 + -0.7
132,031 + -0.4
132,032 - +0.6
132,043 + -0.1
132,044 - -1.3
132,931 + MPMX19_04741 0.65 +1.3
132,931 + MPMX19_04741 0.65 -0.1
132,931 + MPMX19_04741 0.65 -1.1
132,931 + MPMX19_04741 0.65 -0.6
132,931 + MPMX19_04741 0.65 -1.3
132,931 + MPMX19_04741 0.65 +0.4
132,931 + MPMX19_04741 0.65 -0.4
132,931 + MPMX19_04741 0.65 -0.0
132,931 + MPMX19_04741 0.65 -0.6
132,931 + MPMX19_04741 0.65 -0.1
132,931 + MPMX19_04741 0.65 -0.4
132,932 - MPMX19_04741 0.65 -1.3
132,932 - MPMX19_04741 0.65 -0.5
132,932 - MPMX19_04741 0.65 -1.7
132,932 - MPMX19_04741 0.65 -1.1
132,932 - MPMX19_04741 0.65 -0.3
132,932 - MPMX19_04741 0.65 -1.1
132,932 - MPMX19_04741 0.65 -1.9
132,932 - MPMX19_04741 0.65 -1.7
132,932 - MPMX19_04741 0.65 -0.6
132,932 - MPMX19_04741 0.65 -0.3
132,950 - MPMX19_04741 0.66 -1.1
132,950 - MPMX19_04741 0.66 -2.1
132,950 - MPMX19_04741 0.66 +0.1
133,358 + -0.4
133,358 + -2.8
133,358 + +0.5
133,358 + -0.9
133,358 + +0.1
133,358 + +0.2
133,358 + -1.6
133,358 + -0.3
133,358 + -1.0
133,359 - -0.2
133,359 - +0.5
133,359 - -0.0
133,359 - -0.9
133,359 - +0.3
133,359 - -0.9
133,359 - -1.3
133,359 - +0.5
133,359 - -2.0
133,430 + -0.6
133,430 + -0.7
133,430 + -0.6
133,430 + -0.2
133,431 - +1.2
133,431 - +0.2
133,431 - -1.9
133,679 + MPMX19_04742 0.20 +0.5
133,680 - MPMX19_04742 0.20 -1.4
133,680 - MPMX19_04742 0.20 +0.4
133,695 - MPMX19_04742 0.21 -0.6
133,695 - MPMX19_04742 0.21 +0.3
133,695 - MPMX19_04742 0.21 -0.4
133,787 + MPMX19_04742 0.26 -2.2
133,787 + MPMX19_04742 0.26 -2.1
133,787 + MPMX19_04742 0.26 +0.5
133,787 + MPMX19_04742 0.26 +1.1
133,787 + MPMX19_04742 0.26 +0.6
133,788 - MPMX19_04742 0.26 -0.2
133,788 - MPMX19_04742 0.26 -1.7
133,788 - MPMX19_04742 0.26 +0.3
133,788 - MPMX19_04742 0.26 -1.3
133,862 + MPMX19_04742 0.31 -0.9
133,862 + MPMX19_04742 0.31 -0.9
133,863 - MPMX19_04742 0.31 -1.9
133,863 - MPMX19_04742 0.31 +1.4
133,863 - MPMX19_04742 0.31 -0.6
133,863 - MPMX19_04742 0.31 +0.0
133,863 - MPMX19_04742 0.31 +0.4
133,863 - MPMX19_04742 0.31 -0.2
133,863 - MPMX19_04742 0.31 +0.2
133,863 - MPMX19_04742 0.31 +0.6
134,168 + MPMX19_04742 0.49 +0.7
134,168 + MPMX19_04742 0.49 -0.6
134,168 + MPMX19_04742 0.49 +1.1
134,168 + MPMX19_04742 0.49 -0.3
134,168 + MPMX19_04742 0.49 -1.1
134,168 + MPMX19_04742 0.49 +0.1
134,168 + MPMX19_04742 0.49 -0.9
134,169 - MPMX19_04742 0.49 -0.4
134,169 - MPMX19_04742 0.49 -0.6
134,169 - MPMX19_04742 0.49 -0.8
134,169 - MPMX19_04742 0.49 -1.6
134,169 - MPMX19_04742 0.49 -0.0
134,169 - MPMX19_04742 0.49 -1.3
134,169 - MPMX19_04742 0.49 +0.2

Or see this region's nucleotide sequence