Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04725

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04723 and MPMX19_04724 overlap by 8 nucleotidesMPMX19_04724 and MPMX19_04725 are separated by 67 nucleotidesMPMX19_04725 and MPMX19_04726 are separated by 3 nucleotides MPMX19_04723: MPMX19_04723 - Protein FixB, at 114,223 to 115,452 _04723 MPMX19_04724: MPMX19_04724 - hypothetical protein, at 115,445 to 116,242 _04724 MPMX19_04725: MPMX19_04725 - Glycine betaine/choline transport system ATP-binding protein OusV, at 116,310 to 117,593 _04725 MPMX19_04726: MPMX19_04726 - Glycine betaine/choline transport system permease protein OusW, at 117,597 to 118,481 _04726 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2at 115.629 kb on - strand, within MPMX19_04724at 115.629 kb on - strand, within MPMX19_04724at 115.784 kb on + strand, within MPMX19_04724at 115.785 kb on - strand, within MPMX19_04724at 115.785 kb on - strand, within MPMX19_04724at 115.785 kb on - strand, within MPMX19_04724at 115.785 kb on - strand, within MPMX19_04724at 115.938 kb on + strand, within MPMX19_04724at 115.939 kb on - strand, within MPMX19_04724at 115.939 kb on - strand, within MPMX19_04724at 116.207 kb on + strandat 116.207 kb on + strandat 116.207 kb on + strandat 116.207 kb on + strandat 116.207 kb on + strandat 116.207 kb on + strandat 116.207 kb on + strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.208 kb on - strandat 116.268 kb on + strandat 116.268 kb on + strandat 116.433 kb on + strandat 116.433 kb on + strandat 116.433 kb on + strandat 116.433 kb on + strandat 116.433 kb on + strandat 116.434 kb on - strandat 116.434 kb on - strandat 116.434 kb on - strandat 116.434 kb on - strandat 116.434 kb on - strandat 116.434 kb on - strandat 116.434 kb on - strandat 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 117.150 kb on + strand, within MPMX19_04725at 117.151 kb on - strand, within MPMX19_04725at 117.180 kb on + strand, within MPMX19_04725at 117.180 kb on + strand, within MPMX19_04725at 117.180 kb on + strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.333 kb on + strand, within MPMX19_04725at 117.334 kb on - strand, within MPMX19_04725at 118.008 kb on + strand, within MPMX19_04726at 118.008 kb on + strand, within MPMX19_04726at 118.008 kb on + strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.435 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
115,629 - MPMX19_04724 0.23 -1.1
115,629 - MPMX19_04724 0.23 +0.1
115,784 + MPMX19_04724 0.42 -0.3
115,785 - MPMX19_04724 0.43 -0.2
115,785 - MPMX19_04724 0.43 -0.9
115,785 - MPMX19_04724 0.43 -0.2
115,785 - MPMX19_04724 0.43 +0.7
115,938 + MPMX19_04724 0.62 -1.8
115,939 - MPMX19_04724 0.62 -0.5
115,939 - MPMX19_04724 0.62 +0.5
116,207 + +2.1
116,207 + +1.1
116,207 + +0.9
116,207 + -1.7
116,207 + -1.4
116,207 + -1.3
116,207 + +0.1
116,208 - -1.6
116,208 - -1.5
116,208 - -2.2
116,208 - -0.8
116,208 - -0.9
116,208 - +1.1
116,208 - +0.3
116,208 - -1.3
116,208 - -0.4
116,208 - +0.3
116,208 - -1.1
116,208 - -1.1
116,208 - +0.1
116,208 - -1.8
116,268 + -0.3
116,268 + +0.4
116,433 + +0.0
116,433 + -1.4
116,433 + +0.5
116,433 + +0.4
116,433 + -0.7
116,434 - -0.5
116,434 - +1.7
116,434 - +0.0
116,434 - -0.7
116,434 - -2.4
116,434 - -2.3
116,434 - -1.3
116,871 + MPMX19_04725 0.44 +1.0
116,871 + MPMX19_04725 0.44 +0.3
116,871 + MPMX19_04725 0.44 -0.3
116,871 + MPMX19_04725 0.44 -0.4
116,871 + MPMX19_04725 0.44 -0.4
116,871 + MPMX19_04725 0.44 -0.4
116,871 + MPMX19_04725 0.44 -0.9
116,871 + MPMX19_04725 0.44 -0.5
116,871 + MPMX19_04725 0.44 +0.2
116,871 + MPMX19_04725 0.44 +0.7
116,871 + MPMX19_04725 0.44 +0.0
116,871 + MPMX19_04725 0.44 +0.6
116,871 + MPMX19_04725 0.44 +1.5
116,871 + MPMX19_04725 0.44 +0.1
116,871 + MPMX19_04725 0.44 -1.1
116,871 + MPMX19_04725 0.44 +0.3
116,871 + MPMX19_04725 0.44 -0.8
116,872 - MPMX19_04725 0.44 +0.1
116,872 - MPMX19_04725 0.44 -0.4
116,872 - MPMX19_04725 0.44 -1.4
116,872 - MPMX19_04725 0.44 +0.5
116,872 - MPMX19_04725 0.44 -1.3
116,872 - MPMX19_04725 0.44 -0.9
116,872 - MPMX19_04725 0.44 +0.4
116,872 - MPMX19_04725 0.44 -0.3
116,872 - MPMX19_04725 0.44 +0.5
116,872 - MPMX19_04725 0.44 -1.7
116,872 - MPMX19_04725 0.44 -1.1
116,872 - MPMX19_04725 0.44 -0.6
116,872 - MPMX19_04725 0.44 +0.3
116,872 - MPMX19_04725 0.44 +0.7
116,872 - MPMX19_04725 0.44 -0.1
116,872 - MPMX19_04725 0.44 +0.4
116,872 - MPMX19_04725 0.44 -1.0
117,150 + MPMX19_04725 0.65 -0.0
117,151 - MPMX19_04725 0.65 -1.5
117,180 + MPMX19_04725 0.68 -0.1
117,180 + MPMX19_04725 0.68 -1.6
117,180 + MPMX19_04725 0.68 -1.3
117,181 - MPMX19_04725 0.68 -0.1
117,181 - MPMX19_04725 0.68 -1.6
117,181 - MPMX19_04725 0.68 +0.4
117,181 - MPMX19_04725 0.68 -0.6
117,181 - MPMX19_04725 0.68 +0.2
117,181 - MPMX19_04725 0.68 -1.5
117,181 - MPMX19_04725 0.68 +0.7
117,333 + MPMX19_04725 0.80 +0.7
117,334 - MPMX19_04725 0.80 +0.5
118,008 + MPMX19_04726 0.46 +1.7
118,008 + MPMX19_04726 0.46 -0.2
118,008 + MPMX19_04726 0.46 -0.5
118,009 - MPMX19_04726 0.47 +0.4
118,009 - MPMX19_04726 0.47 -0.4
118,009 - MPMX19_04726 0.47 +0.2
118,009 - MPMX19_04726 0.47 +1.0
118,009 - MPMX19_04726 0.47 +1.6
118,009 - MPMX19_04726 0.47 -0.3
118,009 - MPMX19_04726 0.47 -0.9
118,435 + -2.1

Or see this region's nucleotide sequence