Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04680

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04678 and MPMX19_04679 are separated by 35 nucleotidesMPMX19_04679 and MPMX19_04680 are separated by 15 nucleotidesMPMX19_04680 and MPMX19_04681 are separated by 6 nucleotidesMPMX19_04681 and MPMX19_04682 are separated by 26 nucleotides MPMX19_04678: MPMX19_04678 - hypothetical protein, at 64,233 to 65,279 _04678 MPMX19_04679: MPMX19_04679 - Spermidine/putrescine transport system permease protein PotB, at 65,315 to 66,172 _04679 MPMX19_04680: MPMX19_04680 - Inner membrane ABC transporter permease protein YdcV, at 66,188 to 67,024 _04680 MPMX19_04681: MPMX19_04681 - 5-hydroxyisourate hydrolase, at 67,031 to 67,384 _04681 MPMX19_04682: MPMX19_04682 - hypothetical protein, at 67,411 to 68,607 _04682 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1at 65.288 kb on + strandat 65.289 kb on - strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.472 kb on - strand, within MPMX19_04679at 65.472 kb on - strand, within MPMX19_04679at 65.472 kb on - strand, within MPMX19_04679at 65.472 kb on - strand, within MPMX19_04679at 65.472 kb on - strand, within MPMX19_04679at 65.556 kb on + strand, within MPMX19_04679at 65.557 kb on - strand, within MPMX19_04679at 65.557 kb on - strand, within MPMX19_04679at 65.759 kb on + strand, within MPMX19_04679at 65.759 kb on + strand, within MPMX19_04679at 65.759 kb on + strand, within MPMX19_04679at 65.759 kb on + strand, within MPMX19_04679at 65.760 kb on - strand, within MPMX19_04679at 65.796 kb on + strand, within MPMX19_04679at 65.796 kb on + strand, within MPMX19_04679at 65.796 kb on + strand, within MPMX19_04679at 65.796 kb on + strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.159 kb on - strandat 66.159 kb on - strandat 66.198 kb on - strandat 66.341 kb on + strand, within MPMX19_04680at 66.341 kb on + strand, within MPMX19_04680at 66.342 kb on - strand, within MPMX19_04680at 66.342 kb on - strand, within MPMX19_04680at 66.368 kb on + strand, within MPMX19_04680at 66.368 kb on + strand, within MPMX19_04680at 66.384 kb on - strand, within MPMX19_04680at 66.756 kb on - strand, within MPMX19_04680at 67.158 kb on + strand, within MPMX19_04681at 67.158 kb on + strand, within MPMX19_04681at 67.158 kb on + strand, within MPMX19_04681at 67.159 kb on - strand, within MPMX19_04681at 67.159 kb on - strand, within MPMX19_04681at 67.615 kb on + strand, within MPMX19_04682at 67.616 kb on - strand, within MPMX19_04682at 67.987 kb on + strand, within MPMX19_04682

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
65,288 + +1.3
65,289 - -0.7
65,345 + -0.1
65,345 + -0.9
65,345 + +0.6
65,345 + -0.3
65,345 + -0.7
65,345 + -1.3
65,345 + -1.4
65,346 - +0.0
65,346 - +0.1
65,346 - -1.9
65,346 - +0.8
65,346 - +0.4
65,346 - -1.2
65,346 - +0.7
65,471 + MPMX19_04679 0.18 -0.3
65,471 + MPMX19_04679 0.18 -0.3
65,471 + MPMX19_04679 0.18 -0.8
65,471 + MPMX19_04679 0.18 +0.3
65,471 + MPMX19_04679 0.18 -1.1
65,471 + MPMX19_04679 0.18 +0.1
65,471 + MPMX19_04679 0.18 -0.7
65,471 + MPMX19_04679 0.18 +0.6
65,471 + MPMX19_04679 0.18 -0.5
65,472 - MPMX19_04679 0.18 -0.3
65,472 - MPMX19_04679 0.18 -1.1
65,472 - MPMX19_04679 0.18 +0.1
65,472 - MPMX19_04679 0.18 -1.0
65,472 - MPMX19_04679 0.18 -1.4
65,556 + MPMX19_04679 0.28 -1.7
65,557 - MPMX19_04679 0.28 +1.0
65,557 - MPMX19_04679 0.28 -0.9
65,759 + MPMX19_04679 0.52 -0.7
65,759 + MPMX19_04679 0.52 +0.5
65,759 + MPMX19_04679 0.52 -1.0
65,759 + MPMX19_04679 0.52 -0.6
65,760 - MPMX19_04679 0.52 -0.0
65,796 + MPMX19_04679 0.56 -0.1
65,796 + MPMX19_04679 0.56 -0.1
65,796 + MPMX19_04679 0.56 +0.3
65,796 + MPMX19_04679 0.56 +0.1
65,797 - MPMX19_04679 0.56 +1.0
65,797 - MPMX19_04679 0.56 -0.5
65,797 - MPMX19_04679 0.56 -0.6
65,797 - MPMX19_04679 0.56 +0.6
65,797 - MPMX19_04679 0.56 +1.0
65,797 - MPMX19_04679 0.56 +0.0
65,960 + MPMX19_04679 0.75 -1.6
65,960 + MPMX19_04679 0.75 +0.7
65,960 + MPMX19_04679 0.75 +0.2
65,960 + MPMX19_04679 0.75 -0.6
65,960 + MPMX19_04679 0.75 +0.3
65,960 + MPMX19_04679 0.75 -0.1
65,961 - MPMX19_04679 0.75 -0.4
65,961 - MPMX19_04679 0.75 -0.2
65,961 - MPMX19_04679 0.75 +0.5
65,961 - MPMX19_04679 0.75 -1.1
65,961 - MPMX19_04679 0.75 +0.4
65,961 - MPMX19_04679 0.75 -0.3
65,961 - MPMX19_04679 0.75 +0.5
65,961 - MPMX19_04679 0.75 -0.9
65,961 - MPMX19_04679 0.75 -1.4
66,032 + MPMX19_04679 0.84 -1.3
66,032 + MPMX19_04679 0.84 -0.1
66,032 + MPMX19_04679 0.84 -1.6
66,032 + MPMX19_04679 0.84 +0.7
66,032 + MPMX19_04679 0.84 -1.1
66,032 + MPMX19_04679 0.84 -0.1
66,032 + MPMX19_04679 0.84 +0.5
66,032 + MPMX19_04679 0.84 -1.3
66,032 + MPMX19_04679 0.84 +0.3
66,032 + MPMX19_04679 0.84 -0.1
66,032 + MPMX19_04679 0.84 -0.9
66,032 + MPMX19_04679 0.84 -1.3
66,032 + MPMX19_04679 0.84 -0.7
66,032 + MPMX19_04679 0.84 -1.3
66,032 + MPMX19_04679 0.84 -3.4
66,033 - MPMX19_04679 0.84 +0.7
66,033 - MPMX19_04679 0.84 +1.0
66,033 - MPMX19_04679 0.84 +0.1
66,033 - MPMX19_04679 0.84 +0.3
66,033 - MPMX19_04679 0.84 -0.3
66,033 - MPMX19_04679 0.84 +0.2
66,033 - MPMX19_04679 0.84 -0.1
66,033 - MPMX19_04679 0.84 -0.3
66,033 - MPMX19_04679 0.84 -0.1
66,033 - MPMX19_04679 0.84 -0.1
66,033 - MPMX19_04679 0.84 -0.2
66,033 - MPMX19_04679 0.84 -0.8
66,033 - MPMX19_04679 0.84 -0.6
66,038 + MPMX19_04679 0.84 -1.2
66,038 + MPMX19_04679 0.84 -0.1
66,038 + MPMX19_04679 0.84 -0.4
66,038 + MPMX19_04679 0.84 -1.4
66,038 + MPMX19_04679 0.84 +1.0
66,038 + MPMX19_04679 0.84 -2.6
66,038 + MPMX19_04679 0.84 +1.3
66,038 + MPMX19_04679 0.84 -0.1
66,038 + MPMX19_04679 0.84 +0.7
66,038 + MPMX19_04679 0.84 -1.6
66,039 - MPMX19_04679 0.84 -1.7
66,039 - MPMX19_04679 0.84 -0.8
66,039 - MPMX19_04679 0.84 -0.9
66,039 - MPMX19_04679 0.84 +0.1
66,039 - MPMX19_04679 0.84 -0.7
66,039 - MPMX19_04679 0.84 -1.6
66,039 - MPMX19_04679 0.84 -2.2
66,039 - MPMX19_04679 0.84 -0.6
66,039 - MPMX19_04679 0.84 -0.4
66,039 - MPMX19_04679 0.84 -0.8
66,039 - MPMX19_04679 0.84 +0.7
66,039 - MPMX19_04679 0.84 -0.3
66,039 - MPMX19_04679 0.84 +1.1
66,039 - MPMX19_04679 0.84 -0.1
66,039 - MPMX19_04679 0.84 +0.1
66,039 - MPMX19_04679 0.84 +0.3
66,159 - -0.6
66,159 - +0.7
66,198 - +1.1
66,341 + MPMX19_04680 0.18 -0.7
66,341 + MPMX19_04680 0.18 +0.3
66,342 - MPMX19_04680 0.18 -0.9
66,342 - MPMX19_04680 0.18 -1.4
66,368 + MPMX19_04680 0.22 +0.3
66,368 + MPMX19_04680 0.22 -0.8
66,384 - MPMX19_04680 0.23 +0.0
66,756 - MPMX19_04680 0.68 +1.1
67,158 + MPMX19_04681 0.36 -1.1
67,158 + MPMX19_04681 0.36 +0.3
67,158 + MPMX19_04681 0.36 +0.1
67,159 - MPMX19_04681 0.36 -0.2
67,159 - MPMX19_04681 0.36 -1.7
67,615 + MPMX19_04682 0.17 -0.6
67,616 - MPMX19_04682 0.17 +0.9
67,987 + MPMX19_04682 0.48 +0.9

Or see this region's nucleotide sequence