Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04668

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04667 and MPMX19_04668 are separated by 19 nucleotidesMPMX19_04668 and MPMX19_04669 are separated by 112 nucleotidesMPMX19_04669 and MPMX19_04670 are separated by 41 nucleotides MPMX19_04667: MPMX19_04667 - Acetyl-CoA acetyltransferase, at 53,367 to 54,566 _04667 MPMX19_04668: MPMX19_04668 - HTH-type transcriptional regulator DmlR, at 54,586 to 55,485 _04668 MPMX19_04669: MPMX19_04669 - Glucose 1-dehydrogenase, at 55,598 to 56,314 _04669 MPMX19_04670: MPMX19_04670 - hypothetical protein, at 56,356 to 56,910 _04670 Position (kb) 54 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1at 53.751 kb on + strand, within MPMX19_04667at 53.751 kb on + strand, within MPMX19_04667at 53.751 kb on + strand, within MPMX19_04667at 53.751 kb on + strand, within MPMX19_04667at 53.752 kb on - strand, within MPMX19_04667at 53.752 kb on - strand, within MPMX19_04667at 53.838 kb on + strand, within MPMX19_04667at 53.838 kb on + strand, within MPMX19_04667at 53.838 kb on + strand, within MPMX19_04667at 53.838 kb on + strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.889 kb on + strand, within MPMX19_04667at 53.890 kb on - strand, within MPMX19_04667at 53.890 kb on - strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.920 kb on - strand, within MPMX19_04667at 53.920 kb on - strand, within MPMX19_04667at 53.920 kb on - strand, within MPMX19_04667at 54.587 kb on + strandat 54.587 kb on + strandat 54.587 kb on + strandat 54.587 kb on + strandat 54.587 kb on + strandat 54.588 kb on - strandat 54.588 kb on - strandat 54.909 kb on - strand, within MPMX19_04668at 54.971 kb on + strand, within MPMX19_04668at 54.971 kb on + strand, within MPMX19_04668at 54.972 kb on - strand, within MPMX19_04668at 55.286 kb on + strand, within MPMX19_04668at 55.286 kb on + strand, within MPMX19_04668at 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.537 kb on + strandat 55.537 kb on + strandat 55.537 kb on + strandat 55.538 kb on - strandat 55.560 kb on + strandat 55.560 kb on + strandat 55.561 kb on - strandat 55.561 kb on - strandat 55.592 kb on + strandat 55.592 kb on + strandat 55.592 kb on + strandat 55.592 kb on + strandat 55.592 kb on + strandat 55.592 kb on + strandat 55.592 kb on + strandat 55.592 kb on + strandat 55.592 kb on + strandat 55.593 kb on - strandat 55.593 kb on - strandat 55.593 kb on - strandat 55.593 kb on - strandat 55.593 kb on - strandat 55.934 kb on + strand, within MPMX19_04669at 55.934 kb on + strand, within MPMX19_04669at 55.934 kb on + strand, within MPMX19_04669at 55.934 kb on + strand, within MPMX19_04669at 55.934 kb on + strand, within MPMX19_04669at 55.935 kb on - strand, within MPMX19_04669at 55.935 kb on - strand, within MPMX19_04669at 55.935 kb on - strand, within MPMX19_04669

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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53,751 + MPMX19_04667 0.32 -1.1
53,751 + MPMX19_04667 0.32 -0.8
53,751 + MPMX19_04667 0.32 -1.3
53,751 + MPMX19_04667 0.32 -1.4
53,752 - MPMX19_04667 0.32 -2.2
53,752 - MPMX19_04667 0.32 -0.6
53,838 + MPMX19_04667 0.39 -0.3
53,838 + MPMX19_04667 0.39 -2.3
53,838 + MPMX19_04667 0.39 +0.1
53,838 + MPMX19_04667 0.39 +0.3
53,839 - MPMX19_04667 0.39 -1.1
53,839 - MPMX19_04667 0.39 -0.5
53,839 - MPMX19_04667 0.39 +0.1
53,839 - MPMX19_04667 0.39 -0.1
53,839 - MPMX19_04667 0.39 -1.7
53,839 - MPMX19_04667 0.39 -0.3
53,889 + MPMX19_04667 0.43 -0.4
53,890 - MPMX19_04667 0.44 -0.1
53,890 - MPMX19_04667 0.44 -1.3
53,919 + MPMX19_04667 0.46 +0.7
53,919 + MPMX19_04667 0.46 +0.3
53,919 + MPMX19_04667 0.46 +0.3
53,919 + MPMX19_04667 0.46 +0.7
53,919 + MPMX19_04667 0.46 -0.7
53,919 + MPMX19_04667 0.46 +1.1
53,919 + MPMX19_04667 0.46 -0.9
53,920 - MPMX19_04667 0.46 -0.6
53,920 - MPMX19_04667 0.46 -1.9
53,920 - MPMX19_04667 0.46 -1.7
54,587 + -0.5
54,587 + -1.0
54,587 + +0.6
54,587 + +0.3
54,587 + +0.3
54,588 - -1.0
54,588 - +1.0
54,909 - MPMX19_04668 0.36 -0.8
54,971 + MPMX19_04668 0.43 -0.6
54,971 + MPMX19_04668 0.43 -0.9
54,972 - MPMX19_04668 0.43 -1.1
55,286 + MPMX19_04668 0.78 -0.3
55,286 + MPMX19_04668 0.78 -0.9
55,517 + -0.9
55,517 + +0.1
55,517 + +1.0
55,517 + -0.5
55,517 + -1.3
55,517 + -0.3
55,517 + -3.0
55,517 + -0.2
55,517 + -1.6
55,518 - -1.4
55,518 - -1.0
55,518 - -0.1
55,518 - -1.4
55,518 - +0.0
55,518 - -1.6
55,518 - -0.7
55,518 - +0.1
55,537 + -1.2
55,537 + +0.5
55,537 + -1.7
55,538 - +0.0
55,560 + +0.4
55,560 + +0.1
55,561 - +0.6
55,561 - +0.1
55,592 + +0.1
55,592 + -0.4
55,592 + -0.4
55,592 + +1.5
55,592 + +1.0
55,592 + +1.7
55,592 + +0.3
55,592 + -1.0
55,592 + -1.0
55,593 - +1.7
55,593 - -1.9
55,593 - +0.9
55,593 - -0.3
55,593 - +0.1
55,934 + MPMX19_04669 0.47 +0.7
55,934 + MPMX19_04669 0.47 +0.1
55,934 + MPMX19_04669 0.47 +0.9
55,934 + MPMX19_04669 0.47 -0.2
55,934 + MPMX19_04669 0.47 +0.2
55,935 - MPMX19_04669 0.47 -1.9
55,935 - MPMX19_04669 0.47 +0.1
55,935 - MPMX19_04669 0.47 -1.3

Or see this region's nucleotide sequence