Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04619 and MPMX19_04620 are separated by 350 nucleotides MPMX19_04620 and MPMX19_04621 are separated by 416 nucleotides
MPMX19_04619: MPMX19_04619 - IS6 family transposase ISBj7, at 1,005,003 to 1,005,716
_04619
MPMX19_04620: MPMX19_04620 - HTH-type transcriptional regulator CynR, at 1,006,067 to 1,006,966
_04620
MPMX19_04621: MPMX19_04621 - NAD-specific glutamate dehydrogenase, at 1,007,383 to 1,012,236
_04621
Position (kb)
1006
1007 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1005.783 kb on - strand at 1005.783 kb on - strand at 1005.797 kb on - strand at 1005.807 kb on + strand at 1006.000 kb on + strand at 1006.001 kb on - strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on + strand at 1006.020 kb on - strand at 1006.021 kb on + strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.021 kb on - strand at 1006.022 kb on + strand at 1006.022 kb on + strand at 1006.022 kb on + strand at 1006.022 kb on + strand at 1006.022 kb on + strand at 1006.022 kb on + strand at 1006.022 kb on + strand at 1006.022 kb on + strand at 1006.022 kb on + strand at 1006.022 kb on + strand at 1006.022 kb on + strand at 1006.023 kb on - strand at 1006.023 kb on - strand at 1006.037 kb on - strand at 1006.044 kb on + strand at 1006.044 kb on + strand at 1006.044 kb on + strand at 1006.045 kb on - strand at 1006.045 kb on - strand at 1006.045 kb on - strand at 1006.045 kb on - strand at 1006.045 kb on - strand at 1006.326 kb on - strand, within MPMX19_04620 at 1006.326 kb on - strand, within MPMX19_04620 at 1006.679 kb on + strand, within MPMX19_04620 at 1006.679 kb on + strand, within MPMX19_04620 at 1006.680 kb on - strand, within MPMX19_04620 at 1006.680 kb on - strand, within MPMX19_04620 at 1006.680 kb on - strand, within MPMX19_04620 at 1006.680 kb on - strand, within MPMX19_04620 at 1006.680 kb on - strand, within MPMX19_04620 at 1006.680 kb on - strand, within MPMX19_04620 at 1006.680 kb on - strand, within MPMX19_04620 at 1006.680 kb on - strand, within MPMX19_04620 at 1006.721 kb on + strand, within MPMX19_04620 at 1006.722 kb on - strand, within MPMX19_04620 at 1006.933 kb on + strand at 1006.933 kb on + strand at 1006.934 kb on - strand at 1006.934 kb on - strand at 1006.983 kb on + strand at 1006.985 kb on + strand at 1006.985 kb on + strand at 1006.985 kb on + strand at 1006.985 kb on + strand at 1006.985 kb on + strand at 1006.985 kb on - strand at 1006.986 kb on - strand at 1006.986 kb on - strand at 1006.986 kb on - strand at 1006.986 kb on - strand at 1006.986 kb on - strand at 1006.990 kb on + strand at 1007.179 kb on + strand at 1007.185 kb on + strand at 1007.185 kb on + strand at 1007.185 kb on + strand at 1007.231 kb on + strand at 1007.232 kb on - strand at 1007.279 kb on + strand at 1007.279 kb on + strand at 1007.311 kb on + strand at 1007.311 kb on + strand at 1007.311 kb on + strand at 1007.388 kb on + strand at 1007.388 kb on + strand at 1007.389 kb on - strand at 1007.491 kb on + strand at 1007.491 kb on + strand at 1007.491 kb on + strand at 1007.492 kb on - strand at 1007.492 kb on - strand at 1007.542 kb on + strand at 1007.543 kb on - strand at 1007.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 1,005,783 - -0.7 1,005,783 - -0.0 1,005,797 - -1.0 1,005,807 + -0.2 1,006,000 + +1.8 1,006,001 - +0.1 1,006,020 + -0.3 1,006,020 + -0.7 1,006,020 + -1.2 1,006,020 + -0.5 1,006,020 + -1.3 1,006,020 + +0.8 1,006,020 + -0.3 1,006,020 + +1.3 1,006,020 + -0.9 1,006,020 + -0.2 1,006,020 + -1.0 1,006,020 + -0.7 1,006,020 + -1.6 1,006,020 + -1.9 1,006,020 + -0.5 1,006,020 + +0.8 1,006,020 + -1.5 1,006,020 - +0.7 1,006,021 + -0.7 1,006,021 - +0.3 1,006,021 - -0.3 1,006,021 - -0.5 1,006,021 - -0.5 1,006,021 - -0.2 1,006,021 - -0.6 1,006,021 - -1.5 1,006,021 - +0.0 1,006,021 - +0.8 1,006,021 - +0.7 1,006,021 - -0.7 1,006,021 - -0.5 1,006,021 - -1.5 1,006,022 + -0.4 1,006,022 + -0.5 1,006,022 + -1.2 1,006,022 + -0.7 1,006,022 + -2.0 1,006,022 + -0.8 1,006,022 + -0.5 1,006,022 + -2.5 1,006,022 + -1.7 1,006,022 + -1.2 1,006,022 + -1.3 1,006,023 - -0.6 1,006,023 - +0.5 1,006,037 - +0.3 1,006,044 + -0.5 1,006,044 + -1.0 1,006,044 + -1.0 1,006,045 - -1.0 1,006,045 - +0.1 1,006,045 - +0.8 1,006,045 - +0.3 1,006,045 - +0.3 1,006,326 - MPMX19_04620 0.29 -0.0 1,006,326 - MPMX19_04620 0.29 +0.2 1,006,679 + MPMX19_04620 0.68 -1.2 1,006,679 + MPMX19_04620 0.68 -0.0 1,006,680 - MPMX19_04620 0.68 +0.1 1,006,680 - MPMX19_04620 0.68 +0.7 1,006,680 - MPMX19_04620 0.68 -0.2 1,006,680 - MPMX19_04620 0.68 +1.8 1,006,680 - MPMX19_04620 0.68 -1.5 1,006,680 - MPMX19_04620 0.68 +1.3 1,006,680 - MPMX19_04620 0.68 +0.2 1,006,680 - MPMX19_04620 0.68 -1.3 1,006,721 + MPMX19_04620 0.73 -0.2 1,006,722 - MPMX19_04620 0.73 +0.5 1,006,933 + +1.2 1,006,933 + -0.3 1,006,934 - +0.3 1,006,934 - +0.4 1,006,983 + -2.1 1,006,985 + +0.1 1,006,985 + -2.9 1,006,985 + -0.5 1,006,985 + +0.7 1,006,985 + -1.6 1,006,985 - -0.6 1,006,986 - -0.7 1,006,986 - -0.8 1,006,986 - -0.7 1,006,986 - +0.6 1,006,986 - +0.1 1,006,990 + +0.1 1,007,179 + +0.5 1,007,185 + -1.4 1,007,185 + -0.5 1,007,185 + -1.6 1,007,231 + -0.4 1,007,232 - -0.5 1,007,279 + -0.5 1,007,279 + +0.8 1,007,311 + +0.3 1,007,311 + -1.0 1,007,311 + +0.3 1,007,388 + -0.4 1,007,388 + +0.8 1,007,389 - -0.6 1,007,491 + -1.6 1,007,491 + +1.4 1,007,491 + -1.0 1,007,492 - +0.8 1,007,492 - +1.8 1,007,542 + -1.5 1,007,543 - -0.3 1,007,612 - -0.7
Or see this region's nucleotide sequence