Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04610

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04608 and MPMX19_04609 are separated by 17 nucleotidesMPMX19_04609 and MPMX19_04610 overlap by 4 nucleotidesMPMX19_04610 and MPMX19_04611 are separated by 274 nucleotidesMPMX19_04611 and MPMX19_04612 are separated by 73 nucleotides MPMX19_04608: MPMX19_04608 - 3-ketoacyl-CoA thiolase, at 993,645 to 994,847 _04608 MPMX19_04609: MPMX19_04609 - Putative short-chain type dehydrogenase/reductase, at 994,865 to 995,800 _04609 MPMX19_04610: MPMX19_04610 - putative enoyl-CoA hydratase 1, at 995,797 to 996,279 _04610 MPMX19_04611: MPMX19_04611 - hypothetical protein, at 996,554 to 997,195 _04611 MPMX19_04612: MPMX19_04612 - Crotonobetaine/carnitine--CoA ligase, at 997,269 to 998,903 _04612 Position (kb) 995 996 997Strain fitness (log2 ratio) -2 -1 0 1 2at 994.828 kb on - strandat 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.044 kb on - strand, within MPMX19_04609at 995.044 kb on - strand, within MPMX19_04609at 995.044 kb on - strand, within MPMX19_04609at 995.280 kb on + strand, within MPMX19_04609at 995.280 kb on + strand, within MPMX19_04609at 995.343 kb on + strand, within MPMX19_04609at 995.344 kb on - strand, within MPMX19_04609at 995.344 kb on - strand, within MPMX19_04609at 995.703 kb on + strand, within MPMX19_04609at 995.894 kb on + strand, within MPMX19_04610at 995.894 kb on + strand, within MPMX19_04610at 995.895 kb on - strand, within MPMX19_04610at 995.895 kb on - strand, within MPMX19_04610at 996.008 kb on + strand, within MPMX19_04610at 996.008 kb on + strand, within MPMX19_04610at 996.009 kb on - strand, within MPMX19_04610at 996.458 kb on - strandat 996.458 kb on - strandat 996.533 kb on + strandat 996.534 kb on - strandat 996.534 kb on - strandat 996.610 kb on + strandat 996.611 kb on - strandat 996.616 kb on - strandat 996.710 kb on + strand, within MPMX19_04611at 996.710 kb on + strand, within MPMX19_04611

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
994,828 - +0.3
995,043 + MPMX19_04609 0.19 -0.2
995,043 + MPMX19_04609 0.19 -1.3
995,043 + MPMX19_04609 0.19 +0.2
995,043 + MPMX19_04609 0.19 +0.9
995,043 + MPMX19_04609 0.19 -0.3
995,043 + MPMX19_04609 0.19 +0.0
995,043 + MPMX19_04609 0.19 -0.3
995,043 + MPMX19_04609 0.19 +0.1
995,043 + MPMX19_04609 0.19 -1.2
995,043 + MPMX19_04609 0.19 -1.3
995,043 + MPMX19_04609 0.19 +0.5
995,043 + MPMX19_04609 0.19 -0.2
995,043 + MPMX19_04609 0.19 -1.6
995,043 + MPMX19_04609 0.19 +0.3
995,044 - MPMX19_04609 0.19 -0.4
995,044 - MPMX19_04609 0.19 -0.1
995,044 - MPMX19_04609 0.19 -0.7
995,280 + MPMX19_04609 0.44 -0.6
995,280 + MPMX19_04609 0.44 -0.9
995,343 + MPMX19_04609 0.51 -0.7
995,344 - MPMX19_04609 0.51 +1.7
995,344 - MPMX19_04609 0.51 +2.1
995,703 + MPMX19_04609 0.90 -0.2
995,894 + MPMX19_04610 0.20 -0.3
995,894 + MPMX19_04610 0.20 -1.4
995,895 - MPMX19_04610 0.20 -2.0
995,895 - MPMX19_04610 0.20 -0.5
996,008 + MPMX19_04610 0.44 -0.5
996,008 + MPMX19_04610 0.44 -1.0
996,009 - MPMX19_04610 0.44 -1.8
996,458 - -0.6
996,458 - +1.6
996,533 + +0.5
996,534 - -0.7
996,534 - +0.0
996,610 + -1.3
996,611 - -0.5
996,616 - -0.5
996,710 + MPMX19_04611 0.24 -1.7
996,710 + MPMX19_04611 0.24 +0.7

Or see this region's nucleotide sequence